Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81400 * 102.99578 * 2 1 4 4 H 1.09004 * 109.47052 * 304.99491 * 3 2 1 5 5 C 1.52992 * 109.47527 * 64.99941 * 3 2 1 6 6 C 1.53007 * 109.46964 * 185.00108 * 3 2 1 7 7 C 1.50706 * 109.46908 * 64.99839 * 6 3 2 8 8 O 1.21271 * 120.00215 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99465 * 180.02562 * 7 6 3 10 10 C 1.46501 * 120.00017 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.53942 * 113.74196 * 13.74138 * 14 13 12 16 16 N 1.47811 * 86.03642 * 222.08692 * 15 14 13 17 17 C 1.36938 * 134.45712 * 204.64673 * 16 15 14 18 18 H 1.08006 * 119.99731 * 179.86683 * 17 16 15 19 19 C 1.38810 * 119.99900 * 359.86196 * 17 16 15 20 20 N 1.31615 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47037 * 60.00258 * 21 19 17 23 23 H 1.48505 * 109.46825 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46970 * 299.99868 * 21 19 17 25 25 C 1.47587 * 91.05119 * 24.54774 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 1.08999 * 109.46737 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46947 * 300.00171 * 1 2 3 30 30 H 1.08995 * 109.46853 * 60.00340 * 1 2 3 31 31 H 1.09010 * 109.47021 * 60.00061 * 5 3 2 32 32 H 1.09001 * 109.47486 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47309 * 300.00199 * 5 3 2 34 34 H 1.08998 * 109.47160 * 305.00250 * 6 3 2 35 35 H 1.08996 * 109.47236 * 184.99637 * 6 3 2 36 36 H 0.96996 * 120.00676 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46926 * 59.99730 * 10 9 7 38 38 H 1.09001 * 109.47077 * 300.00602 * 10 9 7 39 39 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 40 40 H 1.09004 * 112.94415 * 145.33322 * 14 13 12 41 41 H 1.09001 * 113.77001 * 336.34585 * 15 14 13 42 42 H 1.08996 * 113.77272 * 107.74936 * 15 14 13 43 43 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.76860 * 221.15477 * 25 16 15 45 45 H 1.09000 * 113.86642 * 89.77210 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7427 2.4016 1.3072 6 6 3.7370 1.9413 -0.1258 7 6 4.1919 1.4270 -1.4673 8 8 3.3840 0.9674 -2.2463 9 7 5.4966 1.4781 -1.8013 10 6 5.9390 0.9777 -3.1052 11 6 7.4311 1.1489 -3.2292 12 6 8.3781 0.2215 -2.9554 13 7 9.5686 0.8108 -3.2136 14 6 10.8855 0.1863 -3.0657 15 6 10.8310 -1.3429 -2.8975 16 7 11.8683 -1.1630 -1.8601 17 6 12.8434 -1.9648 -1.3295 18 1 13.4955 -1.5834 -0.5577 19 6 12.9936 -3.2679 -1.7837 20 7 12.1992 -3.7326 -2.7246 21 14 14.3233 -4.3620 -1.0595 22 1 14.0979 -4.5146 0.4004 23 1 14.2756 -5.6959 -1.7104 24 1 15.6536 -3.7450 -1.2932 25 6 11.4331 0.2280 -1.6275 26 7 9.3450 2.0145 -3.6111 27 7 8.0802 2.2485 -3.6280 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2354 1.9150 2.1491 32 1 1.9883 3.4636 1.3074 33 1 0.6635 2.2779 1.3969 34 1 4.2340 1.3805 0.6658 35 1 3.9902 2.9977 -0.0367 36 1 6.1427 1.8460 -1.1785 37 1 5.4423 1.5383 -3.8971 38 1 5.6855 -0.0787 -3.1941 39 1 8.2162 -0.7874 -2.6057 40 1 11.6008 0.5199 -3.8175 41 1 9.8803 -1.7086 -2.5093 42 1 11.1745 -1.8937 -3.7730 43 1 12.3040 -4.6433 -3.0417 44 1 12.2566 0.9290 -1.4911 45 1 10.6599 0.3266 -0.8656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107161076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = 117.343828 kcal Electronic energy + Delta-G solvation = -26176.831860 eV Core-core repulsion = 22360.056107 eV Total energy + Delta-G solvation = -3816.775753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.07599 -39.77545 -38.37601 -35.45457 -34.69066 -33.41088 -32.00547 -31.32652 -29.54849 -28.38206 -27.94653 -26.30212 -25.25928 -24.39023 -22.55588 -21.93445 -21.07999 -20.49372 -19.63144 -17.72629 -17.18926 -16.90565 -16.63877 -16.39790 -15.77064 -15.44656 -15.13135 -14.80207 -14.67962 -14.37256 -14.13514 -13.94751 -13.69007 -13.39292 -13.20314 -13.01300 -12.91692 -12.48498 -12.32288 -12.15177 -12.09691 -11.84940 -11.72234 -11.56223 -11.38324 -11.18873 -10.97559 -10.94549 -10.54686 -10.27156 -10.09147 -9.95667 -9.89009 -9.56599 -9.13707 -9.10498 -9.04718 -7.65750 -7.27341 -6.05608 -3.41212 1.49167 1.81073 2.36936 2.44643 2.60191 2.63355 3.26283 3.30728 3.32065 3.32913 4.21300 4.26126 4.35876 4.43774 4.70625 4.72863 4.81830 4.86739 4.88544 4.92753 4.97840 5.08405 5.15754 5.18593 5.19585 5.27019 5.39721 5.42345 5.52290 5.55232 5.63011 5.72219 5.76280 6.03803 6.09749 6.15958 6.28782 6.31420 6.52781 6.78426 7.01945 7.14952 7.40933 7.66379 8.15152 8.72707 8.74425 9.40722 10.18035 11.11535 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002091 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.849617 B =13386.424643 C =14577.127904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.045 4.045 4 H 0.094 0.906 5 C -0.149 4.149 6 C -0.125 4.125 7 C 0.509 3.491 8 O -0.519 6.519 9 N -0.725 5.725 10 C 0.217 3.783 11 C -0.062 4.062 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.164 3.836 16 N -0.598 5.598 17 C -0.234 4.234 18 H 0.087 0.913 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.281 1.281 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.401 0.599 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.020 10.815 5.716 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.011 6.011 3 C -0.174 4.174 4 H 0.112 0.888 5 C -0.208 4.208 6 C -0.166 4.166 7 C 0.294 3.706 8 O -0.395 6.395 9 N -0.378 5.378 10 C 0.092 3.908 11 C -0.201 4.201 12 C -0.168 4.168 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.198 4.198 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.207 1.207 25 C -0.007 4.007 26 N -0.069 5.069 27 N -0.135 5.135 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.047 10.596 4.663 21.441 hybrid contribution -0.127 -0.558 1.058 1.203 sum -18.174 10.037 5.721 21.535 Atomic orbital electron populations 1.23379 0.95123 1.06258 1.04535 1.87030 1.06414 1.09895 1.97714 1.22866 0.97726 0.95361 1.01439 0.88788 1.22115 1.01550 1.00945 0.96153 1.21529 0.94673 1.03813 0.96555 1.20431 0.82104 0.79070 0.88984 1.90762 1.52593 1.44364 1.51743 1.46033 1.08445 1.64459 1.18879 1.19252 0.85688 1.00419 0.85472 1.21744 0.96737 0.92143 1.09506 1.23518 0.84558 1.02302 1.06463 1.47913 1.08937 1.09226 1.39674 1.25286 0.78719 0.97222 1.01259 1.22747 0.92458 0.86401 0.94709 1.45663 1.34581 1.08887 1.43370 1.18950 1.06950 0.92662 1.17473 0.89547 1.24855 0.99327 0.96935 0.98708 1.69749 1.39463 1.16835 1.30422 0.86090 0.80913 0.79623 0.78483 1.20855 1.21302 1.20745 1.22927 0.96963 0.89395 0.91431 1.78270 1.11305 0.99422 1.17861 1.75014 0.97798 1.23644 1.17015 0.88316 0.90876 0.90585 0.91148 0.91541 0.92239 0.87941 0.87484 0.76463 0.89896 0.89643 0.79223 0.85048 0.94073 0.89022 0.93016 0.91990 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.45 101.05 1.06 0.14 16 2 S -0.24 -2.47 20.24 -107.50 -2.18 -4.65 16 3 C -0.04 -0.37 2.44 -26.73 -0.07 -0.43 16 4 H 0.09 0.85 7.95 -51.92 -0.41 0.44 16 5 C -0.15 -0.85 9.10 37.15 0.34 -0.51 16 6 C -0.12 -0.96 5.17 -27.88 -0.14 -1.10 16 7 C 0.51 5.63 7.54 -10.98 -0.08 5.54 16 8 O -0.52 -7.51 14.79 5.56 0.08 -7.43 16 9 N -0.73 -7.63 5.55 -61.47 -0.34 -7.97 16 10 C 0.22 2.59 6.23 -5.20 -0.03 2.56 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.01 -0.21 10.72 -17.05 -0.18 -0.40 16 13 N -0.26 -4.29 3.54 -56.31 -0.20 -4.49 16 14 C 0.08 1.32 5.14 -70.15 -0.36 0.96 16 15 C 0.16 3.34 6.90 -2.84 -0.02 3.32 16 16 N -0.60 -13.74 3.70 -177.89 -0.66 -14.40 16 17 C -0.23 -5.99 10.70 -15.06 -0.16 -6.15 16 18 H 0.09 2.13 7.83 -52.48 -0.41 1.72 16 19 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 20 N -0.92 -25.08 11.39 55.49 0.63 -24.44 16 21 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.12 2.20 8.74 -2.96 -0.03 2.18 16 26 N -0.09 -1.55 13.17 60.35 0.79 -0.75 16 27 N -0.27 -4.41 12.41 33.29 0.41 -4.00 16 28 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.07 0.42 7.14 -51.92 -0.37 0.05 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 6.92 -51.93 -0.36 -0.04 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 3.67 8.46 -40.82 -0.35 3.32 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.19 2.46 6.73 -52.49 -0.35 2.10 16 40 H 0.13 2.19 8.14 -51.93 -0.42 1.76 16 41 H 0.04 0.82 6.31 -51.93 -0.33 0.50 16 42 H 0.09 2.09 7.16 -51.93 -0.37 1.72 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -31.25 387.31 -7.70 -38.95 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.74 Total: 3.14 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.32 Total: 4.58 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.64 Total: -56.06 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.08 Total: -7.43 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -2.18 Total: -4.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.25 -7.70 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107161076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.294 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds