Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81400 * 102.99578 * 2 1 4 4 H 1.09004 * 109.47052 * 304.99491 * 3 2 1 5 5 C 1.52992 * 109.47527 * 64.99941 * 3 2 1 6 6 C 1.53007 * 109.46964 * 185.00108 * 3 2 1 7 7 C 1.50706 * 109.46908 * 64.99839 * 6 3 2 8 8 O 1.21271 * 120.00215 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99465 * 180.02562 * 7 6 3 10 10 C 1.46501 * 120.00017 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.53942 * 113.74196 * 13.74138 * 14 13 12 16 16 N 1.47811 * 86.03642 * 222.08692 * 15 14 13 17 17 C 1.36938 * 134.45712 * 204.64673 * 16 15 14 18 18 H 1.08006 * 119.99731 * 179.86683 * 17 16 15 19 19 C 1.38810 * 119.99900 * 359.86196 * 17 16 15 20 20 N 1.31615 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47037 * 60.00258 * 21 19 17 23 23 H 1.48505 * 109.46825 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46970 * 299.99868 * 21 19 17 25 25 C 1.47587 * 91.05119 * 24.54774 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 1.08999 * 109.46737 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46947 * 300.00171 * 1 2 3 30 30 H 1.08995 * 109.46853 * 60.00340 * 1 2 3 31 31 H 1.09010 * 109.47021 * 60.00061 * 5 3 2 32 32 H 1.09001 * 109.47486 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47309 * 300.00199 * 5 3 2 34 34 H 1.08998 * 109.47160 * 305.00250 * 6 3 2 35 35 H 1.08996 * 109.47236 * 184.99637 * 6 3 2 36 36 H 0.96996 * 120.00676 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46926 * 59.99730 * 10 9 7 38 38 H 1.09001 * 109.47077 * 300.00602 * 10 9 7 39 39 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 40 40 H 1.09004 * 112.94415 * 145.33322 * 14 13 12 41 41 H 1.09001 * 113.77001 * 336.34585 * 15 14 13 42 42 H 1.08996 * 113.77272 * 107.74936 * 15 14 13 43 43 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.76860 * 221.15477 * 25 16 15 45 45 H 1.09000 * 113.86642 * 89.77210 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7427 2.4016 1.3072 6 6 3.7370 1.9413 -0.1258 7 6 4.1919 1.4270 -1.4673 8 8 3.3840 0.9674 -2.2463 9 7 5.4966 1.4781 -1.8013 10 6 5.9390 0.9777 -3.1052 11 6 7.4311 1.1489 -3.2292 12 6 8.3781 0.2215 -2.9554 13 7 9.5686 0.8108 -3.2136 14 6 10.8855 0.1863 -3.0657 15 6 10.8310 -1.3429 -2.8975 16 7 11.8683 -1.1630 -1.8601 17 6 12.8434 -1.9648 -1.3295 18 1 13.4955 -1.5834 -0.5577 19 6 12.9936 -3.2679 -1.7837 20 7 12.1992 -3.7326 -2.7246 21 14 14.3233 -4.3620 -1.0595 22 1 14.0979 -4.5146 0.4004 23 1 14.2756 -5.6959 -1.7104 24 1 15.6536 -3.7450 -1.2932 25 6 11.4331 0.2280 -1.6275 26 7 9.3450 2.0145 -3.6111 27 7 8.0802 2.2485 -3.6280 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2354 1.9150 2.1491 32 1 1.9883 3.4636 1.3074 33 1 0.6635 2.2779 1.3969 34 1 4.2340 1.3805 0.6658 35 1 3.9902 2.9977 -0.0367 36 1 6.1427 1.8460 -1.1785 37 1 5.4423 1.5383 -3.8971 38 1 5.6855 -0.0787 -3.1941 39 1 8.2162 -0.7874 -2.6057 40 1 11.6008 0.5199 -3.8175 41 1 9.8803 -1.7086 -2.5093 42 1 11.1745 -1.8937 -3.7730 43 1 12.3040 -4.6433 -3.0417 44 1 12.2566 0.9290 -1.4911 45 1 10.6599 0.3266 -0.8656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107161076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = 96.862598 kcal Electronic energy + Delta-G solvation = -26177.719993 eV Core-core repulsion = 22360.056107 eV Total energy + Delta-G solvation = -3817.663886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.34768 -40.66880 -39.93198 -36.38600 -35.41849 -34.94185 -33.65098 -32.48019 -30.20178 -29.70645 -29.04975 -27.30731 -26.74641 -25.98673 -23.43592 -23.20730 -22.27485 -21.33550 -21.12646 -19.06258 -18.58125 -17.87286 -17.62560 -17.48587 -16.96840 -16.81210 -16.37231 -15.95634 -15.76515 -15.48987 -15.14604 -14.86480 -14.63905 -14.45916 -14.24867 -14.17189 -13.71701 -13.58058 -13.52957 -13.38959 -13.07909 -12.97403 -12.84459 -12.73275 -12.61565 -12.43331 -12.30774 -12.14518 -12.13040 -11.79832 -11.71632 -11.08809 -10.96122 -10.85855 -10.66026 -10.26164 -10.05531 -9.10832 -8.44008 -8.00559 -5.36012 0.56886 0.84960 1.25236 1.29497 1.49015 1.50906 1.56651 1.74553 1.76195 2.41892 2.44395 3.07778 3.12667 3.31626 3.34416 3.63973 3.74505 3.78890 3.92441 4.00654 4.16267 4.24998 4.27475 4.34549 4.37780 4.50361 4.57422 4.59520 4.62069 4.68413 4.70739 4.80892 4.90221 4.93143 5.01243 5.02970 5.05874 5.10354 5.29038 5.36593 5.41630 5.66378 5.77421 6.57968 6.80358 7.31075 7.46053 7.49202 8.34016 9.16015 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002091 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.849617 B =13386.424643 C =14577.127904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.312 6.312 3 C -0.031 4.031 4 H 0.082 0.918 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.506 3.494 8 O -0.557 6.557 9 N -0.719 5.719 10 C 0.222 3.778 11 C -0.047 4.047 12 C -0.015 4.015 13 N -0.268 5.268 14 C 0.105 3.895 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.239 4.239 18 H 0.091 0.909 19 C -0.056 4.056 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.280 5.280 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.410 0.590 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.205 0.795 40 H 0.138 0.862 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.253 0.747 44 H 0.077 0.923 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.571 12.253 7.232 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.086 6.086 3 C -0.160 4.160 4 H 0.101 0.899 5 C -0.201 4.201 6 C -0.160 4.160 7 C 0.293 3.707 8 O -0.435 6.435 9 N -0.373 5.373 10 C 0.096 3.904 11 C -0.187 4.187 12 C -0.168 4.168 13 N -0.061 5.061 14 C 0.003 3.997 15 C 0.038 3.962 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.109 0.891 19 C -0.251 4.251 20 N -0.596 5.596 21 Si 0.808 3.192 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.000 4.000 26 N -0.086 5.086 27 N -0.147 5.147 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.246 0.754 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.222 0.778 40 H 0.156 0.844 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.596 12.092 6.203 23.032 hybrid contribution -0.061 -0.924 0.574 1.090 sum -18.657 11.168 6.777 22.776 Atomic orbital electron populations 1.23369 0.92095 1.06884 1.05401 1.87226 1.10043 1.13487 1.97881 1.22887 0.97904 0.92843 1.02393 0.89934 1.22076 1.01774 1.01717 0.94552 1.21612 0.94392 1.05552 0.94479 1.21033 0.81623 0.78209 0.89803 1.90749 1.53505 1.46070 1.53196 1.45964 1.08713 1.64191 1.18381 1.19178 0.84246 1.00700 0.86266 1.21932 0.97410 0.91177 1.08139 1.23819 0.84037 1.02925 1.06035 1.47711 1.08868 1.09312 1.40205 1.24691 0.79217 0.94910 1.00930 1.22614 0.91950 0.88358 0.93233 1.45907 1.34817 1.10613 1.44154 1.19305 1.07318 0.93084 1.16968 0.89084 1.25613 1.01535 0.98374 0.99531 1.69910 1.41181 1.16614 1.31929 0.85139 0.78835 0.77488 0.77783 1.20270 1.22144 1.20068 1.23017 0.97570 0.87270 0.92169 1.78276 1.11767 0.99726 1.18873 1.75003 0.97749 1.24538 1.17385 0.87875 0.89042 0.90583 0.90974 0.89671 0.91844 0.86828 0.84442 0.75435 0.90407 0.89260 0.77817 0.84400 0.93612 0.91828 0.93791 0.90524 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.45 113.37 1.19 -0.32 16 2 S -0.31 -6.40 20.24 -56.49 -1.14 -7.55 16 3 C -0.03 -0.46 2.44 30.59 0.07 -0.39 16 4 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 5 C -0.14 -1.27 9.10 71.98 0.66 -0.61 16 6 C -0.12 -1.58 5.17 29.85 0.15 -1.43 16 7 C 0.51 10.59 7.54 87.66 0.66 11.25 16 8 O -0.56 -16.00 14.79 -3.00 -0.04 -16.04 16 9 N -0.72 -14.02 5.55 -466.80 -2.59 -16.61 16 10 C 0.22 5.05 6.23 85.63 0.53 5.59 16 11 C -0.05 -1.26 6.61 41.59 0.28 -0.98 16 12 C -0.01 -0.41 10.72 83.49 0.89 0.49 16 13 N -0.27 -8.31 3.54 -332.05 -1.18 -9.49 16 14 C 0.10 3.47 5.14 46.75 0.24 3.71 16 15 C 0.16 6.72 6.90 86.44 0.60 7.31 16 16 N -0.63 -28.46 3.70 -716.72 -2.65 -31.11 16 17 C -0.24 -12.16 10.70 84.03 0.90 -11.26 16 18 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 20 N -0.95 -52.57 11.39 21.65 0.25 -52.33 16 21 Si 0.98 42.48 29.55 68.60 2.03 44.51 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.30 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C 0.13 4.40 8.74 86.48 0.76 5.15 16 26 N -0.11 -3.57 13.17 37.02 0.49 -3.09 16 27 N -0.28 -8.83 12.41 -48.60 -0.60 -9.43 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 0.90 7.14 -2.39 -0.02 0.89 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.53 6.92 -2.39 -0.02 0.51 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.41 6.61 8.46 -92.71 -0.78 5.83 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.21 4.97 6.73 -2.91 -0.02 4.95 16 40 H 0.14 4.43 8.14 -2.38 -0.02 4.41 16 41 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 42 H 0.06 2.96 7.16 -2.39 -0.02 2.94 16 43 H 0.25 13.78 8.31 -92.70 -0.77 13.00 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.51 387.31 2.17 -65.35 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.22 Total: 19.78 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 7.39 Total: 16.02 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.29 Total: -122.06 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.04 Total: -16.04 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -1.14 Total: -7.55 kcal Total: -67.51 2.17 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107161076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.208 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds