Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47021 * 2 1 4 4 N 1.28714 * 125.87180 * 90.02407 * 3 2 1 5 5 N 1.28629 * 110.17964 * 179.73472 * 4 3 2 6 6 C 1.33769 * 108.88659 * 0.02562 * 5 4 3 7 7 C 1.35322 * 125.86299 * 269.71584 * 3 2 1 8 8 C 1.50690 * 126.91464 * 0.22385 * 7 3 2 9 9 N 1.46904 * 109.47320 * 275.00281 * 8 7 3 10 10 C 1.46897 * 110.99896 * 294.30250 * 9 8 7 11 11 C 1.53238 * 109.33745 * 172.74671 * 10 9 8 12 12 N 1.47077 * 108.52532 * 53.82967 * 11 10 9 13 13 C 1.34776 * 120.88199 * 128.78927 * 12 11 10 14 14 O 1.21282 * 119.99759 * 180.02562 * 13 12 11 15 15 C 1.50701 * 120.00150 * 0.02784 * 13 12 11 16 16 S 1.80993 * 109.46940 * 179.97438 * 15 13 12 17 17 C 1.76209 * 99.99985 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99247 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00560 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99545 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47220 * 60.00464 * 21 19 17 23 23 H 1.48499 * 109.47324 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47282 * 300.00476 * 21 19 17 25 25 C 1.47086 * 118.23626 * 308.81910 * 12 11 10 26 26 C 1.46901 * 110.99801 * 169.99810 * 9 8 7 27 27 H 1.09003 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46990 * 299.99917 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00769 * 1 2 3 30 30 H 1.09003 * 109.47430 * 239.99925 * 2 1 3 31 31 H 1.09006 * 109.47209 * 119.99602 * 2 1 3 32 32 H 1.08004 * 126.75096 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47093 * 35.00022 * 8 7 3 34 34 H 1.09003 * 109.47306 * 155.00596 * 8 7 3 35 35 H 1.09003 * 109.49226 * 292.70528 * 10 9 8 36 36 H 1.09001 * 109.49723 * 52.78741 * 10 9 8 37 37 H 1.09003 * 109.62807 * 294.11904 * 11 10 9 38 38 H 1.08996 * 109.78756 * 173.63490 * 11 10 9 39 39 H 1.08998 * 109.46963 * 299.99692 * 15 13 12 40 40 H 1.08999 * 109.46732 * 59.99491 * 15 13 12 41 41 H 0.96998 * 120.00023 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.62629 * 291.47090 * 25 12 11 43 43 H 1.08999 * 109.78659 * 170.98723 * 25 12 11 44 44 H 1.09001 * 109.49767 * 307.21510 * 26 9 8 45 45 H 1.08998 * 109.49028 * 67.27002 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2701 2.0922 1.0430 5 7 2.6880 3.2579 0.6951 6 6 2.7155 3.3273 -0.6405 7 6 2.2877 2.1269 -1.0967 8 6 2.1412 1.7054 -2.5360 9 7 3.3541 0.9958 -2.9643 10 6 4.5152 1.8957 -2.9725 11 6 5.7851 1.0829 -3.2467 12 7 5.5879 0.3108 -4.4829 13 6 6.4956 0.3549 -5.4782 14 8 6.3166 -0.2880 -6.4910 15 6 7.7329 1.2029 -5.3328 16 16 8.7466 1.0518 -6.8245 17 6 10.0851 2.1137 -6.3937 18 1 10.0887 2.6175 -5.4385 19 6 11.1351 2.3019 -7.2817 20 7 11.1309 1.6875 -8.4458 21 14 12.5537 3.4283 -6.8252 22 1 13.2115 2.9218 -5.5939 23 1 13.5386 3.4591 -7.9362 24 1 12.0386 4.7998 -6.5828 25 6 4.3736 -0.5102 -4.6043 26 6 3.1593 0.3652 -4.2767 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.0194 4.1744 -1.2375 33 1 1.2798 1.0450 -2.6354 34 1 1.9969 2.5874 -3.1600 35 1 4.3882 2.6462 -3.7527 36 1 4.6007 2.3882 -2.0039 37 1 5.9709 0.4025 -2.4157 38 1 6.6347 1.7551 -3.3664 39 1 7.4448 2.2448 -5.1928 40 1 8.3054 0.8650 -4.4690 41 1 11.8645 1.8194 -9.0664 42 1 4.4237 -1.3438 -3.9038 43 1 4.2863 -0.8916 -5.6217 44 1 2.2613 -0.2523 -4.2539 45 1 3.0507 1.1371 -5.0386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112628845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = 51.383653 kcal Electronic energy + Delta-G solvation = -27000.284906 eV Core-core repulsion = 23180.648905 eV Total energy + Delta-G solvation = -3819.636001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.25148 -41.18643 -39.13425 -36.47615 -35.88288 -34.59023 -33.11930 -32.13492 -31.60271 -30.82065 -28.76081 -27.65617 -25.92231 -25.18125 -24.65483 -23.36477 -22.47103 -21.29655 -20.35010 -19.51689 -18.36945 -18.09839 -17.36191 -17.01574 -16.87838 -16.71917 -16.37666 -16.07125 -16.05967 -15.71106 -15.55358 -15.00359 -14.78706 -14.67185 -14.47911 -14.22530 -13.82231 -13.69684 -13.38736 -13.19314 -13.17175 -12.87523 -12.81569 -12.64598 -12.63631 -12.44300 -12.40944 -12.26649 -12.13685 -11.74247 -11.66056 -11.13479 -11.03464 -10.89138 -10.28393 -10.21048 -9.88601 -9.36853 -8.67884 -8.35008 -6.13389 0.58812 1.24726 1.43452 1.45003 1.50809 1.54469 1.54959 1.57398 2.06684 2.26993 2.83140 2.99038 3.23528 3.36028 3.62594 3.64763 3.86107 3.91622 3.96271 4.00176 4.05395 4.18963 4.23998 4.26637 4.34648 4.36607 4.42986 4.47020 4.53647 4.58602 4.72372 4.74792 4.79515 4.81999 4.84818 4.99871 5.05533 5.18659 5.24833 5.41031 5.48774 5.68722 5.83111 5.89791 6.19009 6.26684 7.06214 7.11798 7.53630 8.73875 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.002303 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.780518 B =12156.095249 C =13271.287719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.268 5.268 4 N -0.121 5.121 5 N -0.311 5.311 6 C -0.058 4.058 7 C 0.003 3.997 8 C 0.130 3.870 9 N -0.535 5.535 10 C 0.045 3.955 11 C 0.110 3.890 12 N -0.609 5.609 13 C 0.535 3.465 14 O -0.564 6.564 15 C -0.125 4.125 16 S -0.149 6.149 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.113 3.887 26 C 0.054 3.946 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.709 -2.470 16.944 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.063 5.063 4 N -0.099 5.099 5 N -0.175 5.175 6 C -0.217 4.217 7 C -0.131 4.131 8 C 0.001 3.999 9 N -0.261 5.261 10 C -0.084 4.084 11 C -0.013 4.013 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.276 4.276 16 S 0.078 5.922 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.009 4.009 26 C -0.074 4.074 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.220 0.780 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.818 -3.825 17.226 30.451 hybrid contribution 1.197 1.861 -0.518 2.273 sum -23.621 -1.964 16.708 28.999 Atomic orbital electron populations 1.22139 0.91930 1.05230 1.02784 1.22495 0.96927 0.75157 1.07400 1.47709 1.40689 1.14103 1.03788 1.78244 1.18743 0.99682 1.13278 1.75060 1.16988 1.11333 1.14135 1.23825 1.06637 0.99798 0.91473 1.22233 1.06320 0.92362 0.92214 1.20582 0.93513 0.99822 0.86007 1.61916 1.03429 1.32598 1.28138 1.22468 0.89821 0.93856 1.02257 1.21983 0.98531 0.95255 0.85542 1.48155 1.21687 1.47602 1.16894 1.20069 0.83984 0.81098 0.82616 1.90676 1.77422 1.45603 1.30552 1.23366 0.97310 1.02999 1.03915 1.85549 1.22116 1.63267 1.21293 1.23149 1.07656 1.32178 1.06421 0.89998 1.26109 1.01049 0.97694 0.94220 1.70169 1.33270 1.42535 1.08699 0.85028 0.76655 0.78322 0.78155 1.18722 1.20369 1.18630 1.21808 0.82503 0.93749 1.02837 1.22467 0.98577 0.97916 0.88474 0.87334 0.93091 0.91321 0.85243 0.87337 0.77993 0.86471 0.90229 0.93718 0.88780 0.89868 0.89071 0.87585 0.87787 0.91973 0.89598 0.90270 0.85941 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.24 71.98 0.74 0.12 16 2 C 0.10 0.65 6.83 86.38 0.59 1.24 16 3 N -0.27 -3.89 3.34 -334.39 -1.12 -5.01 16 4 N -0.12 -2.70 13.16 37.02 0.49 -2.21 16 5 N -0.31 -7.47 12.41 -58.25 -0.72 -8.20 16 6 C -0.06 -0.98 10.81 83.73 0.91 -0.07 16 7 C 0.00 0.04 5.72 41.35 0.24 0.28 16 8 C 0.13 0.95 4.98 85.55 0.43 1.38 16 9 N -0.54 -5.80 4.62 -899.82 -4.16 -9.96 16 10 C 0.04 0.65 5.46 86.38 0.47 1.12 16 11 C 0.11 2.08 6.50 86.35 0.56 2.64 16 12 N -0.61 -15.36 3.01 -817.93 -2.46 -17.83 16 13 C 0.53 19.61 7.73 87.66 0.68 20.28 16 14 O -0.56 -25.65 15.32 -3.03 -0.05 -25.69 16 15 C -0.12 -4.94 4.52 71.24 0.32 -4.62 16 16 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 17 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 21 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 C 0.11 2.17 6.59 86.35 0.57 2.74 16 26 C 0.05 0.62 5.62 86.38 0.49 1.11 16 27 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.13 0.40 7.83 -2.39 -0.02 0.38 16 31 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.12 0.31 7.87 -2.39 -0.02 0.29 16 34 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.33 6.18 -2.39 -0.01 1.31 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.81 6.02 -2.39 -0.01 1.79 16 39 H 0.11 3.80 7.66 -2.40 -0.02 3.78 16 40 H 0.10 3.79 8.00 -2.40 -0.02 3.77 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.88 7.07 -2.39 -0.02 1.86 16 44 H 0.12 0.64 7.99 -2.39 -0.02 0.62 16 45 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -83.06 382.57 1.22 -81.84 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.99 Total: 9.40 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 7.09 Total: -2.94 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -7.69 Total: -98.66 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -83.06 1.22 -81.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112628845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.227 kcal (2) G-P(sol) polarization free energy of solvation -83.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds