Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 S 1.81401 * 109.47418 * 120.00191 * 2 1 3 5 5 C 1.81395 * 103.00367 * 175.00063 * 4 2 1 6 6 C 1.50698 * 109.47347 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99744 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00014 * 179.97438 * 6 5 4 9 9 C 1.46510 * 119.99846 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.77591 * 31.76199 * 9 8 6 11 11 C 1.54317 * 110.71725 * 268.52634 * 9 8 6 12 12 N 1.47026 * 107.26560 * 219.44207 * 11 9 8 13 13 C 1.36939 * 125.64441 * 178.89258 * 12 11 9 14 14 H 1.08007 * 119.99660 * 174.91283 * 13 12 11 15 15 C 1.38812 * 120.00396 * 354.91885 * 13 12 11 16 16 N 1.31617 * 119.99905 * 7.05806 * 15 13 12 17 17 Si 1.86796 * 119.99989 * 187.06293 * 15 13 12 18 18 H 1.48500 * 109.47387 * 94.98762 * 17 15 13 19 19 H 1.48503 * 109.47340 * 214.98354 * 17 15 13 20 20 H 1.48500 * 109.47695 * 334.98419 * 17 15 13 21 21 C 1.47422 * 108.70491 * 358.94446 * 12 11 9 22 22 C 1.54901 * 104.83165 * 24.12772 * 21 12 11 23 23 H 1.09001 * 111.03765 * 204.90582 * 22 21 12 24 24 N 1.46495 * 111.00952 * 81.06645 * 22 21 12 25 25 C 1.35317 * 125.86667 * 332.80737 * 24 22 21 26 26 C 1.35343 * 106.17673 * 179.77273 * 25 24 22 27 27 N 1.33766 * 106.50047 * 0.22022 * 26 25 24 28 28 N 1.28637 * 108.88535 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47771 * 299.99851 * 1 2 3 30 30 H 1.09003 * 109.47615 * 59.99976 * 1 2 3 31 31 H 1.09002 * 109.47528 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47131 * 240.00514 * 2 1 3 33 33 H 1.09001 * 109.46992 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47173 * 300.00222 * 3 2 1 35 35 H 1.09004 * 109.46674 * 60.00234 * 3 2 1 36 36 H 1.09003 * 109.47204 * 60.00152 * 5 4 2 37 37 H 1.08997 * 109.47296 * 300.00133 * 5 4 2 38 38 H 0.96994 * 120.00276 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.88683 * 338.85969 * 11 9 8 40 40 H 1.09004 * 109.88562 * 100.03272 * 11 9 8 41 41 H 0.96999 * 120.00000 * 180.02562 * 16 15 13 42 42 H 1.09002 * 110.36416 * 265.28945 * 21 12 11 43 43 H 1.09007 * 110.36656 * 142.96645 * 21 12 11 44 44 H 1.08003 * 126.90986 * 0.02933 * 25 24 22 45 45 H 1.08003 * 126.75330 * 180.24534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 3.9307 -0.8875 1.2290 6 6 4.5894 -1.5774 2.3956 7 8 3.9137 -2.0057 3.3072 8 7 5.9293 -1.7195 2.4255 9 6 6.5697 -2.3908 3.5594 10 1 5.9184 -3.1623 3.9700 11 6 6.9605 -1.3697 4.6485 12 7 8.2706 -1.7763 5.1778 13 6 8.9784 -1.1183 6.1480 14 1 9.8961 -1.5423 6.5283 15 6 8.5164 0.0936 6.6429 16 7 7.3325 0.5428 6.2837 17 14 9.5750 1.0869 7.8185 18 1 10.3485 2.0982 7.0541 19 1 8.7059 1.7729 8.8081 20 1 10.5123 0.1795 8.5280 21 6 8.6965 -3.0088 4.4902 22 6 7.9370 -2.9924 3.1403 23 1 7.8157 -4.0019 2.7473 24 7 8.6137 -2.1311 2.1674 25 6 9.3938 -1.0650 2.4601 26 6 9.8144 -0.5684 1.2733 27 7 9.2741 -1.3417 0.3250 28 7 8.5655 -2.2563 0.8872 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 4.3053 0.1333 1.1524 37 1 4.1590 -1.4281 0.3105 38 1 6.4697 -1.3773 1.6963 39 1 7.0295 -0.3724 4.2141 40 1 6.2192 -1.3779 5.4476 41 1 7.0099 1.3897 6.6292 42 1 8.4145 -3.8853 5.0736 43 1 9.7731 -2.9956 4.3200 44 1 9.6360 -0.6888 3.4431 45 1 10.4596 0.2843 1.1218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128763518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = 99.787778 kcal Electronic energy + Delta-G solvation = -28050.356441 eV Core-core repulsion = 24232.819400 eV Total energy + Delta-G solvation = -3817.537041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.98150 -39.65795 -37.86443 -34.95815 -34.23065 -33.47301 -31.83315 -30.65812 -30.36987 -28.65237 -27.60769 -27.16473 -24.88129 -22.75382 -22.24208 -22.13481 -21.04997 -20.22161 -20.00316 -17.83061 -17.28806 -16.96767 -16.43934 -15.97017 -15.53031 -15.34320 -15.01169 -14.60821 -14.47917 -14.33335 -14.11532 -13.86148 -13.55060 -13.44825 -13.04879 -12.84723 -12.51815 -12.48488 -12.32895 -11.87502 -11.68105 -11.51796 -11.42639 -11.38752 -11.32815 -11.12268 -10.90189 -10.66860 -10.58337 -10.25873 -10.03826 -9.85011 -9.80644 -9.76965 -8.99492 -8.89209 -8.75341 -7.67203 -7.17913 -5.95708 -3.34338 1.39462 1.96171 2.44615 2.60840 2.73714 2.89583 3.26648 3.30233 3.33819 3.36097 4.26887 4.46702 4.54605 4.62865 4.69838 4.78495 4.93122 4.94427 5.01713 5.04461 5.13448 5.29735 5.33565 5.39204 5.44843 5.50583 5.57218 5.59380 5.69591 5.74964 5.79298 5.88840 5.92622 6.03102 6.11211 6.15508 6.46247 6.50981 7.01429 7.21756 7.30618 7.56481 7.59099 7.93781 8.31094 8.82408 8.92069 9.52340 10.12064 11.14448 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003626 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.015518 B = 7720.464341 C = 8974.155603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.149 4.149 4 S -0.175 6.175 5 C -0.127 4.127 6 C 0.534 3.466 7 O -0.515 6.515 8 N -0.711 5.711 9 C 0.112 3.888 10 H 0.114 0.886 11 C 0.167 3.833 12 N -0.601 5.601 13 C -0.247 4.247 14 H 0.084 0.916 15 C 0.004 3.996 16 N -0.910 5.910 17 Si 0.913 3.087 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.128 3.872 22 C 0.114 3.886 23 H 0.120 0.880 24 N -0.276 5.276 25 C -0.004 4.004 26 C -0.076 4.076 27 N -0.278 5.278 28 N -0.111 5.111 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.257 0.743 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.204 0.796 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -1.717 -12.257 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C -0.208 4.208 4 S 0.051 5.949 5 C -0.279 4.279 6 C 0.318 3.682 7 O -0.390 6.390 8 N -0.364 5.364 9 C 0.005 3.995 10 H 0.132 0.868 11 C 0.041 3.959 12 N -0.329 5.329 13 C -0.375 4.375 14 H 0.101 0.899 15 C -0.194 4.194 16 N -0.555 5.555 17 Si 0.742 3.258 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.000 4.000 22 C 0.010 3.990 23 H 0.137 0.863 24 N -0.070 5.070 25 C -0.156 4.156 26 C -0.233 4.233 27 N -0.145 5.145 28 N -0.090 5.090 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.233 0.767 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.221 0.779 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.975 -3.074 -11.777 14.029 hybrid contribution 2.024 1.885 0.233 2.776 sum -4.951 -1.188 -11.545 12.618 Atomic orbital electron populations 1.21555 0.91674 1.02959 1.02699 1.23254 1.00039 0.98961 0.99003 1.22111 1.01187 0.94576 1.02952 1.87480 1.01229 1.76405 1.29769 1.23494 0.97509 1.05266 1.01588 1.19520 0.82255 0.79585 0.86805 1.90758 1.62821 1.48169 1.37212 1.45719 1.06546 1.60267 1.23881 1.22879 0.90946 0.97621 0.88042 0.86825 1.21659 0.87607 0.94110 0.92508 1.44489 1.18834 1.25496 1.44078 1.18999 1.04237 1.00712 1.13512 0.89869 1.24866 0.96834 0.97762 0.99942 1.69958 1.16916 1.21442 1.47141 0.86106 0.79324 0.80215 0.80124 1.21333 1.21607 1.20469 1.21944 0.97591 0.92716 0.87714 1.23362 0.93460 0.93177 0.89047 0.86259 1.47282 1.32273 1.21294 1.06114 1.24219 0.97108 0.90873 1.03377 1.23548 1.06865 1.03961 0.88902 1.75007 1.08954 1.02918 1.27580 1.78219 1.20541 1.20702 0.89548 0.91567 0.91246 0.91644 0.89660 0.92571 0.91882 0.91135 0.87341 0.87436 0.76675 0.92241 0.92353 0.93272 0.92806 0.92175 0.77875 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.20 37.15 0.34 -0.73 16 2 C -0.08 -0.80 3.38 -26.73 -0.09 -0.89 16 3 C -0.15 -1.33 9.10 37.16 0.34 -0.99 16 4 S -0.17 -2.39 20.29 -107.50 -2.18 -4.57 16 5 C -0.13 -1.68 6.12 36.00 0.22 -1.46 16 6 C 0.53 9.03 7.85 -10.99 -0.09 8.95 16 7 O -0.51 -10.56 15.51 5.55 0.09 -10.48 16 8 N -0.71 -11.61 5.07 -52.03 -0.26 -11.88 16 9 C 0.11 1.94 3.19 -66.09 -0.21 1.73 16 10 H 0.11 1.99 7.55 -51.93 -0.39 1.60 16 11 C 0.17 3.62 4.76 -3.07 -0.01 3.61 16 12 N -0.60 -12.84 2.23 -170.07 -0.38 -13.22 16 13 C -0.25 -5.95 10.05 -15.06 -0.15 -6.10 16 14 H 0.08 1.94 7.84 -52.48 -0.41 1.52 16 15 C 0.00 0.11 5.48 -17.43 -0.10 0.01 16 16 N -0.91 -24.60 10.36 55.49 0.57 -24.03 16 17 Si 0.91 20.28 29.56 -169.99 -5.02 15.25 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.13 2.14 6.21 -2.53 -0.02 2.12 16 22 C 0.11 1.72 4.06 -65.79 -0.27 1.46 16 23 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 24 N -0.28 -4.41 2.43 -52.69 -0.13 -4.54 16 25 C 0.00 -0.07 10.01 -17.05 -0.17 -0.24 16 26 C -0.08 -1.16 12.05 -17.74 -0.21 -1.38 16 27 N -0.28 -4.68 12.41 30.23 0.38 -4.31 16 28 N -0.11 -1.85 12.26 60.35 0.74 -1.11 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.31 7.14 -51.92 -0.37 0.94 16 37 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 6.28 6.79 -40.82 -0.28 6.01 16 39 H 0.06 1.46 7.18 -51.93 -0.37 1.09 16 40 H 0.06 1.51 7.61 -51.93 -0.40 1.12 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 44 H 0.20 3.69 6.81 -52.48 -0.36 3.34 16 45 H 0.18 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -29.50 378.25 -7.62 -37.12 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.71 Total: 9.98 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.42 Total: 6.08 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.92 Total: -59.08 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.18 Total: -4.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.50 -7.62 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128763518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.908 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds