Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46899 * 109.47254 * 179.97438 * 3 2 1 5 5 C 1.46904 * 111.00029 * 179.97438 * 4 3 2 6 6 H 1.08995 * 110.63534 * 34.30030 * 5 4 3 7 7 C 1.54323 * 110.72070 * 271.15894 * 5 4 3 8 8 N 1.47017 * 107.26933 * 219.44453 * 7 5 4 9 9 C 1.34781 * 125.64763 * 178.98150 * 8 7 5 10 10 O 1.21272 * 119.99860 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99829 * 179.97438 * 9 8 7 12 12 S 1.80997 * 109.46984 * 179.97438 * 11 9 8 13 13 C 1.76199 * 100.00201 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99749 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00614 * 180.02562 * 13 12 11 16 16 N 1.31639 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00630 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46859 * 89.99997 * 17 15 13 19 19 H 1.48501 * 109.47328 * 209.99891 * 17 15 13 20 20 H 1.48493 * 109.46983 * 330.00090 * 17 15 13 21 21 C 1.47428 * 108.70404 * 358.93820 * 8 7 5 22 22 C 1.55119 * 104.94140 * 24.00643 * 21 8 7 23 23 H 1.08998 * 111.16408 * 205.12635 * 22 21 8 24 24 N 1.46501 * 110.93492 * 81.21323 * 22 21 8 25 25 C 1.35310 * 125.87058 * 332.95469 * 24 22 21 26 26 C 1.35351 * 106.17879 * 180.02562 * 25 24 22 27 27 N 1.33771 * 106.49536 * 359.97438 * 26 25 24 28 28 N 1.28634 * 108.88798 * 359.73985 * 27 26 25 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.00908 * 110.99847 * 56.04959 * 4 3 2 37 37 H 1.09001 * 109.88097 * 338.86252 * 7 5 4 38 38 H 1.09004 * 109.88011 * 100.02608 * 7 5 4 39 39 H 1.08998 * 109.47694 * 299.99523 * 11 9 8 40 40 H 1.09007 * 109.47095 * 59.99950 * 11 9 8 41 41 H 0.96991 * 120.00063 * 179.97438 * 16 15 13 42 42 H 1.09005 * 110.36104 * 142.96864 * 21 8 7 43 43 H 1.08996 * 110.37163 * 265.29147 * 21 8 7 44 44 H 1.08007 * 126.91104 * 0.02673 * 25 24 22 45 45 H 1.08003 * 126.75127 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0355 2.8138 0.0000 6 1 3.3863 3.4748 0.5742 7 6 4.2046 3.3332 -1.4433 8 7 5.4554 4.1045 -1.4859 9 6 5.9695 4.7078 -2.5760 10 8 5.3887 4.6378 -3.6383 11 6 7.2660 5.4692 -2.4748 12 16 7.6894 6.1576 -4.0943 13 6 9.2013 6.9699 -3.6958 14 1 9.5838 6.9341 -2.6863 15 6 9.9003 7.6568 -4.6787 16 7 9.4338 7.7010 -5.9089 17 14 11.5028 8.5187 -4.2560 18 1 12.6367 7.5805 -4.4548 19 1 11.6772 9.7001 -5.1386 20 1 11.4684 8.9603 -2.8387 21 6 6.0537 4.1097 -0.1385 22 6 5.4831 2.8463 0.5574 23 1 5.4820 2.9607 1.6413 24 7 6.2263 1.6484 0.1587 25 6 6.8885 1.4782 -1.0090 26 6 7.4264 0.2371 -0.9601 27 7 7.0720 -0.2842 0.2198 28 7 6.3664 0.5790 0.8614 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.8709 0.9161 -0.7806 37 1 4.2634 2.4929 -2.1351 38 1 3.3640 3.9751 -1.7071 39 1 7.1567 6.2786 -1.7530 40 1 8.0584 4.7956 -2.1482 41 1 9.9220 8.1813 -6.5957 42 1 7.1400 4.0491 -0.2057 43 1 5.7559 5.0061 0.4054 44 1 6.9713 2.1896 -1.8174 45 1 8.0241 -0.2387 -1.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129603874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 76.167836 kcal Electronic energy + Delta-G solvation = -27446.694287 eV Core-core repulsion = 23628.133009 eV Total energy + Delta-G solvation = -3818.561278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.34905 -40.34422 -38.24661 -36.37010 -33.93883 -33.16730 -32.51618 -30.98343 -30.47845 -29.60219 -28.02626 -25.64059 -25.19878 -24.35233 -22.80250 -22.32319 -21.81886 -20.71154 -19.73593 -18.09159 -17.83778 -17.09441 -16.57981 -16.05295 -16.01049 -15.30039 -15.21101 -14.98348 -14.88068 -14.83618 -14.10777 -14.09012 -13.87432 -13.62577 -13.41635 -12.94951 -12.83916 -12.81143 -12.64232 -12.43418 -12.20198 -11.96161 -11.80707 -11.67216 -11.37440 -11.15305 -11.13884 -11.10762 -10.95197 -10.84634 -10.22467 -9.92243 -9.72489 -9.36947 -9.15240 -9.05935 -8.81955 -8.36851 -6.62297 -6.30536 -4.02756 1.55743 2.13408 2.54333 2.59603 2.76817 3.16223 3.16876 3.24219 3.34956 3.44132 3.69495 3.86780 4.11516 4.25152 4.45259 4.53414 4.60881 4.63586 4.69567 4.77285 4.92439 4.95572 5.04924 5.06078 5.12020 5.13663 5.19287 5.26848 5.31770 5.34959 5.36081 5.48141 5.63736 5.65644 5.68933 5.77018 5.86824 5.93099 6.00168 6.13985 6.38622 6.54828 6.73589 7.25898 7.50964 8.24766 8.26340 8.51560 9.15053 10.76828 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.002699 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.109384 B =10370.340826 C =11333.090211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.669 5.669 5 C 0.071 3.929 6 H 0.119 0.881 7 C 0.079 3.921 8 N -0.627 5.627 9 C 0.549 3.451 10 O -0.504 6.504 11 C -0.150 4.150 12 S -0.057 6.057 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.092 3.908 22 C 0.139 3.861 23 H 0.138 0.862 24 N -0.272 5.272 25 C -0.047 4.047 26 C -0.053 4.053 27 N -0.278 5.278 28 N -0.066 5.066 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.346 0.654 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.183 0.817 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 -11.309 15.078 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.299 5.299 5 C -0.042 4.042 6 H 0.137 0.863 7 C -0.046 4.046 8 N -0.367 5.367 9 C 0.338 3.662 10 O -0.377 6.377 11 C -0.300 4.300 12 S 0.170 5.830 13 C -0.685 4.685 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.033 4.033 22 C 0.035 3.965 23 H 0.156 0.844 24 N -0.066 5.066 25 C -0.197 4.197 26 C -0.209 4.209 27 N -0.144 5.144 28 N -0.046 5.046 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.200 0.800 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.520 -12.087 15.225 24.264 hybrid contribution 1.769 1.641 -0.577 2.481 sum -12.751 -10.447 14.648 22.052 Atomic orbital electron populations 1.21718 0.95296 1.01960 1.01855 1.21488 0.95752 0.96009 1.02859 1.22094 0.86350 0.97688 1.00949 1.60501 1.08305 1.10694 1.50443 1.23065 0.94437 0.91738 0.94931 0.86281 1.22754 0.88173 0.96599 0.97118 1.48527 1.24122 1.54981 1.09030 1.20151 0.86292 0.77987 0.81800 1.90744 1.60992 1.58966 1.26958 1.23548 0.95657 1.02044 1.08777 1.85449 1.28981 1.65769 1.02841 1.22830 1.08374 1.38655 0.98627 0.90876 1.24998 0.98321 0.95758 0.94439 1.70008 1.38633 1.40218 1.01310 0.86159 0.81936 0.78913 0.78460 1.20181 1.20699 1.19671 1.22735 1.00348 0.96264 0.83918 1.22929 0.90721 0.80816 1.02048 0.84393 1.47093 1.34061 1.13274 1.12174 1.23712 1.01768 1.01232 0.93027 1.23584 1.05539 0.93724 0.98069 1.75132 1.11058 1.22707 1.05511 1.78340 1.15889 0.90748 1.19593 0.92421 0.92568 0.92760 0.92181 0.90883 0.90519 0.94722 0.83490 0.91273 0.90535 0.89039 0.89210 0.92077 0.88588 0.87995 0.79985 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.12 -0.83 6.19 -26.74 -0.17 -1.00 16 3 C 0.06 0.38 5.55 -3.83 -0.02 0.36 16 4 N -0.67 -5.22 5.87 -104.79 -0.62 -5.83 16 5 C 0.07 0.49 3.11 -65.88 -0.21 0.28 16 6 H 0.12 0.60 7.86 -51.93 -0.41 0.19 16 7 C 0.08 0.75 6.21 -3.07 -0.02 0.73 16 8 N -0.63 -7.08 2.19 -170.39 -0.37 -7.45 16 9 C 0.55 9.11 7.65 -10.98 -0.08 9.02 16 10 O -0.50 -10.54 16.19 5.56 0.09 -10.45 16 11 C -0.15 -2.73 5.16 36.00 0.19 -2.54 16 12 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 13 C -0.54 -14.62 9.50 30.94 0.29 -14.33 16 14 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 15 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 16 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 17 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.09 0.72 5.66 -2.41 -0.01 0.71 16 22 C 0.14 1.02 4.08 -65.67 -0.27 0.76 16 23 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 24 N -0.27 -2.80 2.71 -52.57 -0.14 -2.94 16 25 C -0.05 -0.52 10.02 -17.05 -0.17 -0.69 16 26 C -0.05 -0.62 12.05 -17.74 -0.21 -0.84 16 27 N -0.28 -3.84 12.41 30.24 0.38 -3.47 16 28 N -0.07 -0.85 13.17 60.35 0.79 -0.06 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.35 3.19 7.93 -39.29 -0.31 2.88 16 37 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 40 H 0.09 1.50 7.85 -51.91 -0.41 1.09 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.10 0.80 7.19 -51.93 -0.37 0.43 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.18 2.08 6.81 -52.48 -0.36 1.73 16 45 H 0.19 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -34.30 386.64 -7.82 -42.12 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.86 Total: 0.89 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.41 Total: -6.07 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.77 Total: -44.40 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -7.82 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129603874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.288 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds