Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00172 * 2 1 3 5 5 C 1.46897 * 110.99928 * 155.00319 * 4 2 1 6 6 H 1.09004 * 110.88701 * 34.29262 * 5 4 2 7 7 C 1.54916 * 111.00340 * 270.41897 * 5 4 2 8 8 N 1.47469 * 104.81038 * 204.95052 * 7 5 4 9 9 C 1.34780 * 125.62430 * 204.06774 * 8 7 5 10 10 O 1.21280 * 120.00147 * 359.96945 * 9 8 7 11 11 C 1.50697 * 119.99507 * 179.97438 * 9 8 7 12 12 S 1.81000 * 109.46826 * 180.02562 * 11 9 8 13 13 C 1.76206 * 99.99948 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.99871 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00389 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47330 * 59.99370 * 17 15 13 19 19 H 1.48499 * 109.47586 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46845 * 300.00045 * 17 15 13 21 21 C 1.47019 * 108.72535 * 24.06587 * 8 7 5 22 22 C 1.54328 * 107.27189 * 358.97280 * 21 8 7 23 23 H 1.08993 * 110.72428 * 219.44274 * 22 21 8 24 24 N 1.46502 * 110.86851 * 96.24087 * 22 21 8 25 25 C 1.35322 * 125.87057 * 331.39367 * 24 22 21 26 26 C 1.35347 * 106.17657 * 179.97438 * 25 24 22 27 27 N 1.33776 * 106.49432 * 0.02562 * 26 25 24 28 28 N 1.28630 * 108.88638 * 359.73040 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 36 36 H 1.00906 * 110.99860 * 278.95203 * 4 2 1 37 37 H 1.09010 * 110.36162 * 323.75037 * 7 5 4 38 38 H 1.08998 * 110.36733 * 86.07449 * 7 5 4 39 39 H 1.09004 * 109.47223 * 299.99666 * 11 9 8 40 40 H 1.09003 * 109.47583 * 60.00031 * 11 9 8 41 41 H 0.96999 * 120.00419 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.88027 * 239.56297 * 21 8 7 43 43 H 1.08998 * 110.01361 * 118.46697 * 21 8 7 44 44 H 1.07997 * 126.90865 * 359.97438 * 25 24 22 45 45 H 1.07993 * 126.75479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3669 -1.2355 0.9808 6 1 3.9479 -0.5828 0.3291 7 6 3.3000 -2.6738 0.4093 8 7 4.5763 -3.2969 0.8061 9 6 5.1696 -4.3353 0.1846 10 8 4.6493 -4.8368 -0.7894 11 6 6.4795 -4.8733 0.7001 12 16 7.0154 -6.2546 -0.3395 13 6 8.5238 -6.6775 0.4672 14 1 8.8463 -6.1215 1.3352 15 6 9.2975 -7.7250 -0.0129 16 7 8.9043 -8.4029 -1.0705 17 14 10.8970 -8.1729 0.8418 18 1 10.6168 -8.5500 2.2505 19 1 11.5303 -9.3175 0.1390 20 1 11.8159 -7.0065 0.8152 21 6 5.0943 -2.5981 1.9913 22 6 4.0983 -1.4687 2.3291 23 1 4.6274 -0.5686 2.6417 24 7 3.1537 -1.8980 3.3635 25 6 2.7445 -3.1686 3.5855 26 6 1.8810 -3.1102 4.6261 27 7 1.8047 -1.8237 4.9846 28 7 2.5746 -1.1322 4.2206 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0019 -0.0816 2.0023 37 1 2.4614 -3.2167 0.8456 38 1 3.2117 -2.6467 -0.6768 39 1 7.2320 -4.0851 0.6727 40 1 6.3521 -5.2184 1.7262 41 1 9.4452 -9.1347 -1.4062 42 1 6.0747 -2.1746 1.7730 43 1 5.1682 -3.2904 2.8299 44 1 3.0463 -4.0516 3.0418 45 1 1.3566 -3.9392 5.0780 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129603918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = 79.247095 kcal Electronic energy + Delta-G solvation = -27519.237402 eV Core-core repulsion = 23700.809650 eV Total energy + Delta-G solvation = -3818.427752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.46921 -40.30088 -38.35281 -36.70208 -34.05858 -32.50371 -32.17311 -31.15179 -29.87722 -29.57057 -27.53358 -27.33867 -25.55447 -24.49067 -22.91664 -22.40673 -21.17479 -20.86337 -19.61967 -18.26200 -17.91112 -16.95718 -16.50935 -16.02730 -15.54003 -15.35665 -15.26943 -15.14179 -14.86973 -14.54920 -14.24430 -13.99428 -13.83155 -13.70571 -13.40464 -13.24147 -12.76950 -12.62863 -12.60487 -12.30457 -12.09031 -11.94340 -11.86614 -11.78141 -11.60200 -11.22319 -11.12582 -11.09572 -11.06047 -10.84050 -10.23364 -9.91481 -9.65255 -9.47330 -9.13168 -9.03584 -8.79802 -8.34763 -6.60060 -6.28890 -4.00944 1.44490 1.98100 2.48727 2.59385 2.83753 3.17215 3.18352 3.23950 3.38938 3.45968 3.62796 3.74424 4.12878 4.32085 4.34331 4.48975 4.56513 4.60885 4.74969 4.82144 4.88744 4.90954 5.02215 5.06290 5.08959 5.16455 5.21618 5.34220 5.38393 5.44321 5.48986 5.50337 5.57975 5.64609 5.72210 5.73989 5.92780 5.96943 6.03380 6.06434 6.36306 6.52757 6.83664 7.33363 7.51845 8.27203 8.31519 8.37422 9.16377 10.78410 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002702 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.726183 B =10360.720408 C =11371.328399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 C -0.184 4.184 4 N -0.672 5.672 5 C 0.066 3.934 6 H 0.088 0.912 7 C 0.115 3.885 8 N -0.628 5.628 9 C 0.552 3.448 10 O -0.504 6.504 11 C -0.150 4.150 12 S -0.057 6.057 13 C -0.538 4.538 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.097 3.903 22 C 0.128 3.872 23 H 0.133 0.867 24 N -0.273 5.273 25 C -0.030 4.030 26 C -0.052 4.052 27 N -0.269 5.269 28 N -0.089 5.089 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.352 0.648 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.270 0.730 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.185 0.815 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.724 18.382 6.440 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.243 4.243 4 N -0.305 5.305 5 C -0.047 4.047 6 H 0.106 0.894 7 C -0.009 4.009 8 N -0.368 5.368 9 C 0.341 3.659 10 O -0.377 6.377 11 C -0.300 4.300 12 S 0.169 5.831 13 C -0.686 4.686 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.028 4.028 22 C 0.024 3.976 23 H 0.151 0.849 24 N -0.066 5.066 25 C -0.181 4.181 26 C -0.209 4.209 27 N -0.135 5.135 28 N -0.068 5.068 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.202 0.798 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.904 18.266 5.162 23.529 hybrid contribution 2.428 -0.018 1.249 2.731 sum -11.476 18.248 6.411 22.490 Atomic orbital electron populations 1.21738 0.93855 1.02553 1.01498 1.21652 0.96323 0.92377 0.92787 1.22526 1.01191 0.97732 1.02808 1.60463 1.21364 1.41920 1.06759 1.23119 0.90518 0.97293 0.93734 0.89425 1.22236 0.86521 0.90729 1.01391 1.48499 1.23718 1.34232 1.30343 1.20064 0.85775 0.77547 0.82502 1.90743 1.64720 1.56768 1.25461 1.23541 0.95654 1.05297 1.05515 1.85447 1.26734 1.33101 1.37771 1.22798 1.07650 1.20867 1.17262 0.90950 1.24988 0.98387 0.95091 0.95009 1.69996 1.38179 1.20077 1.21925 0.86224 0.81730 0.78149 0.79410 1.19889 1.20754 1.19923 1.22273 0.96846 0.93448 0.90219 1.22831 0.88830 0.99753 0.86187 0.84898 1.47117 1.30654 1.06019 1.22853 1.23584 1.02382 0.89823 1.02286 1.23534 1.02596 0.96035 0.98738 1.75071 1.15164 1.03522 1.19788 1.78193 1.08289 1.20041 1.00317 0.92274 0.91852 0.92693 0.90040 0.92755 0.91655 0.92235 0.82633 0.90277 0.89669 0.89160 0.89183 0.92027 0.88236 0.89490 0.79778 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.52 37.16 0.35 -0.62 16 2 C 0.08 0.54 3.09 -67.71 -0.21 0.33 16 3 C -0.18 -1.07 9.15 37.16 0.34 -0.73 16 4 N -0.67 -5.25 5.68 -97.49 -0.55 -5.80 16 5 C 0.07 0.49 2.96 -65.56 -0.19 0.30 16 6 H 0.09 0.57 7.24 -51.93 -0.38 0.20 16 7 C 0.11 1.19 6.19 -2.50 -0.02 1.17 16 8 N -0.63 -7.36 3.33 -170.48 -0.57 -7.92 16 9 C 0.55 9.37 7.87 -10.99 -0.09 9.28 16 10 O -0.50 -10.72 16.12 5.56 0.09 -10.63 16 11 C -0.15 -2.76 5.35 36.00 0.19 -2.57 16 12 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 13 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 14 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 17 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.10 0.80 5.53 -3.06 -0.02 0.78 16 22 C 0.13 0.91 3.76 -66.09 -0.25 0.66 16 23 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 24 N -0.27 -2.53 2.73 -52.98 -0.14 -2.67 16 25 C -0.03 -0.29 9.38 -17.04 -0.16 -0.45 16 26 C -0.05 -0.54 12.05 -17.74 -0.21 -0.75 16 27 N -0.27 -3.37 12.41 30.23 0.38 -2.99 16 28 N -0.09 -1.02 12.37 60.35 0.75 -0.27 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.05 0.31 7.49 -51.93 -0.39 -0.08 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 36 H 0.35 2.95 7.25 -39.29 -0.28 2.66 16 37 H 0.08 0.89 7.60 -51.92 -0.39 0.50 16 38 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 39 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 40 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.72 7.18 -51.93 -0.37 0.34 16 44 H 0.19 1.64 7.71 -52.49 -0.40 1.23 16 45 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.05 384.93 -7.63 -41.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.82 Total: 0.49 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.06 Total: -5.03 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.59 Total: -44.39 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.05 -7.63 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129603918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.926 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds