Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00172 * 2 1 3 5 5 C 1.46897 * 110.99928 * 155.00319 * 4 2 1 6 6 H 1.09004 * 110.88701 * 34.29262 * 5 4 2 7 7 C 1.54916 * 111.00340 * 270.41897 * 5 4 2 8 8 N 1.47469 * 104.81038 * 204.95052 * 7 5 4 9 9 C 1.34780 * 125.62430 * 204.06774 * 8 7 5 10 10 O 1.21280 * 120.00147 * 359.96945 * 9 8 7 11 11 C 1.50697 * 119.99507 * 179.97438 * 9 8 7 12 12 S 1.81000 * 109.46826 * 180.02562 * 11 9 8 13 13 C 1.76206 * 99.99948 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.99871 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00389 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47330 * 59.99370 * 17 15 13 19 19 H 1.48499 * 109.47586 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46845 * 300.00045 * 17 15 13 21 21 C 1.47019 * 108.72535 * 24.06587 * 8 7 5 22 22 C 1.54328 * 107.27189 * 358.97280 * 21 8 7 23 23 H 1.08993 * 110.72428 * 219.44274 * 22 21 8 24 24 N 1.46502 * 110.86851 * 96.24087 * 22 21 8 25 25 C 1.35322 * 125.87057 * 331.39367 * 24 22 21 26 26 C 1.35347 * 106.17657 * 179.97438 * 25 24 22 27 27 N 1.33776 * 106.49432 * 0.02562 * 26 25 24 28 28 N 1.28630 * 108.88638 * 359.73040 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 36 36 H 1.00906 * 110.99860 * 278.95203 * 4 2 1 37 37 H 1.09010 * 110.36162 * 323.75037 * 7 5 4 38 38 H 1.08998 * 110.36733 * 86.07449 * 7 5 4 39 39 H 1.09004 * 109.47223 * 299.99666 * 11 9 8 40 40 H 1.09003 * 109.47583 * 60.00031 * 11 9 8 41 41 H 0.96999 * 120.00419 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.88027 * 239.56297 * 21 8 7 43 43 H 1.08998 * 110.01361 * 118.46697 * 21 8 7 44 44 H 1.07997 * 126.90865 * 359.97438 * 25 24 22 45 45 H 1.07993 * 126.75479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3669 -1.2355 0.9808 6 1 3.9479 -0.5828 0.3291 7 6 3.3000 -2.6738 0.4093 8 7 4.5763 -3.2969 0.8061 9 6 5.1696 -4.3353 0.1846 10 8 4.6493 -4.8368 -0.7894 11 6 6.4795 -4.8733 0.7001 12 16 7.0154 -6.2546 -0.3395 13 6 8.5238 -6.6775 0.4672 14 1 8.8463 -6.1215 1.3352 15 6 9.2975 -7.7250 -0.0129 16 7 8.9043 -8.4029 -1.0705 17 14 10.8970 -8.1729 0.8418 18 1 10.6168 -8.5500 2.2505 19 1 11.5303 -9.3175 0.1390 20 1 11.8159 -7.0065 0.8152 21 6 5.0943 -2.5981 1.9913 22 6 4.0983 -1.4687 2.3291 23 1 4.6274 -0.5686 2.6417 24 7 3.1537 -1.8980 3.3635 25 6 2.7445 -3.1686 3.5855 26 6 1.8810 -3.1102 4.6261 27 7 1.8047 -1.8237 4.9846 28 7 2.5746 -1.1322 4.2206 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0019 -0.0816 2.0023 37 1 2.4614 -3.2167 0.8456 38 1 3.2117 -2.6467 -0.6768 39 1 7.2320 -4.0851 0.6727 40 1 6.3521 -5.2184 1.7262 41 1 9.4452 -9.1347 -1.4062 42 1 6.0747 -2.1746 1.7730 43 1 5.1682 -3.2904 2.8299 44 1 3.0463 -4.0516 3.0418 45 1 1.3566 -3.9392 5.0780 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129603918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = 54.885577 kcal Electronic energy + Delta-G solvation = -27520.293796 eV Core-core repulsion = 23700.809650 eV Total energy + Delta-G solvation = -3819.484146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.24342 -41.28882 -39.40222 -37.46287 -34.97414 -34.57469 -32.96703 -31.94712 -31.08081 -30.36604 -28.32413 -28.03535 -27.58365 -25.34725 -23.69296 -23.21805 -21.82726 -21.60019 -20.73907 -19.67919 -18.98314 -18.21477 -17.35888 -16.99091 -16.87117 -16.57894 -16.36675 -15.98884 -15.88369 -15.66109 -15.44287 -14.91184 -14.73566 -14.55375 -14.41785 -14.19330 -13.93449 -13.64782 -13.53681 -13.15058 -13.12463 -12.88161 -12.84759 -12.74279 -12.64998 -12.61599 -12.44889 -12.16533 -11.88918 -11.78781 -11.74237 -11.12088 -11.06982 -10.98968 -10.27000 -10.25321 -9.91290 -9.57075 -8.66470 -8.33923 -6.11948 0.67332 1.18677 1.31394 1.44327 1.44494 1.51510 1.54189 1.68404 1.93270 2.27714 2.74467 2.91737 3.00656 3.08019 3.28079 3.60898 3.69870 3.83878 3.89714 3.94634 3.99985 4.17142 4.19680 4.26103 4.32864 4.36985 4.42013 4.46877 4.53127 4.57821 4.70847 4.74645 4.77521 4.86617 4.92224 4.98709 5.11478 5.23587 5.29511 5.34905 5.42768 5.65463 5.91468 6.16194 6.20478 6.25341 7.03234 7.07881 7.57121 8.74821 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002702 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.726183 B =10360.720408 C =11371.328399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 C -0.178 4.178 4 N -0.680 5.680 5 C 0.079 3.921 6 H 0.108 0.892 7 C 0.115 3.885 8 N -0.613 5.613 9 C 0.555 3.445 10 O -0.558 6.558 11 C -0.123 4.123 12 S -0.150 6.150 13 C -0.544 4.544 14 H 0.085 0.915 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.995 3.005 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.261 1.261 21 C 0.091 3.909 22 C 0.132 3.868 23 H 0.166 0.834 24 N -0.265 5.265 25 C -0.033 4.033 26 C -0.058 4.058 27 N -0.302 5.302 28 N -0.099 5.099 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.353 0.647 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.191 0.809 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.554 20.420 8.225 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 C -0.236 4.236 4 N -0.313 5.313 5 C -0.034 4.034 6 H 0.125 0.875 7 C -0.008 4.008 8 N -0.349 5.349 9 C 0.344 3.656 10 O -0.435 6.435 11 C -0.274 4.274 12 S 0.077 5.923 13 C -0.692 4.692 14 H 0.103 0.897 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.817 3.183 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.033 4.033 22 C 0.029 3.971 23 H 0.183 0.817 24 N -0.059 5.059 25 C -0.184 4.184 26 C -0.215 4.215 27 N -0.168 5.168 28 N -0.078 5.078 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.112 0.888 44 H 0.208 0.792 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.751 20.372 6.993 25.030 hybrid contribution 1.928 -0.563 0.716 2.132 sum -10.823 19.809 7.708 23.853 Atomic orbital electron populations 1.21714 0.94151 1.01643 1.01880 1.21650 0.96079 0.93165 0.92163 1.22456 1.01510 0.96611 1.03050 1.60384 1.21586 1.42280 1.07093 1.23005 0.90825 0.95455 0.94071 0.87479 1.22276 0.85340 0.92544 1.00667 1.48233 1.23637 1.32536 1.30539 1.19713 0.85342 0.78414 0.82132 1.90730 1.65920 1.58937 1.27959 1.23339 0.96968 1.02634 1.04416 1.85653 1.27656 1.37703 1.41303 1.23154 1.07659 1.21011 1.17374 0.89715 1.26090 1.02356 0.94964 0.95640 1.70169 1.39898 1.20859 1.23861 0.85047 0.76824 0.78049 0.78362 1.18687 1.20669 1.18586 1.22605 0.98229 0.93752 0.88699 1.23049 0.88221 1.00384 0.85408 0.81658 1.47273 1.30303 1.05716 1.22593 1.23715 1.02335 0.90182 1.02205 1.23948 1.02672 0.95969 0.98885 1.75048 1.16266 1.04557 1.20899 1.78131 1.08622 1.20270 1.00737 0.91198 0.93376 0.93001 0.90534 0.92122 0.91175 0.92241 0.82604 0.91270 0.91184 0.86831 0.87185 0.92038 0.85413 0.88811 0.79212 0.77662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.52 71.98 0.69 -1.12 16 2 C 0.08 0.97 3.09 44.92 0.14 1.11 16 3 C -0.18 -1.66 9.15 71.98 0.66 -1.00 16 4 N -0.68 -9.39 5.68 -462.36 -2.63 -12.01 16 5 C 0.08 0.97 2.96 46.31 0.14 1.11 16 6 H 0.11 1.01 7.24 -2.38 -0.02 1.00 16 7 C 0.12 2.25 6.19 86.85 0.54 2.79 16 8 N -0.61 -13.17 3.33 -811.65 -2.70 -15.87 16 9 C 0.56 18.44 7.87 87.66 0.69 19.13 16 10 O -0.56 -24.32 16.12 -3.03 -0.05 -24.37 16 11 C -0.12 -4.35 5.35 71.23 0.38 -3.97 16 12 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 13 C -0.54 -29.64 9.50 67.95 0.65 -29.00 16 14 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 15 C 0.01 0.79 5.49 84.86 0.47 1.26 16 16 N -0.91 -54.65 13.22 21.65 0.29 -54.36 16 17 Si 1.00 42.11 29.55 68.60 2.03 44.14 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 C 0.09 1.15 5.53 86.73 0.48 1.63 16 22 C 0.13 1.42 3.76 46.18 0.17 1.59 16 23 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 24 N -0.26 -4.27 2.73 -321.54 -0.88 -5.14 16 25 C -0.03 -0.58 9.38 83.49 0.78 0.21 16 26 C -0.06 -1.11 12.05 83.73 1.01 -0.10 16 27 N -0.30 -7.19 12.41 -58.26 -0.72 -7.91 16 28 N -0.10 -2.06 12.37 37.02 0.46 -1.61 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.04 7.85 -2.39 -0.02 1.02 16 33 H 0.06 0.50 7.49 -2.39 -0.02 0.48 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 36 H 0.35 5.13 7.25 -89.69 -0.65 4.48 16 37 H 0.07 1.53 7.60 -2.38 -0.02 1.51 16 38 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 39 H 0.11 3.51 8.14 -2.39 -0.02 3.50 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.09 1.18 7.18 -2.39 -0.02 1.17 16 44 H 0.19 3.05 7.71 -2.91 -0.02 3.03 16 45 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -77.08 384.93 1.77 -75.31 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.35 Total: 17.27 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 6.78 Total: -6.37 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.18 Total: -96.91 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -77.08 1.77 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129603918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.199 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds