Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99897 * 2 1 4 4 C 1.52999 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46755 * 305.00140 * 4 3 2 6 6 C 1.53004 * 109.47089 * 64.99494 * 4 3 2 7 7 C 1.50692 * 109.47456 * 184.99755 * 4 3 2 8 8 O 1.21287 * 119.99985 * 359.97438 * 7 4 3 9 9 N 1.34780 * 120.00224 * 180.02562 * 7 4 3 10 10 C 1.47419 * 125.64726 * 359.95103 * 9 7 4 11 11 C 1.54906 * 104.83392 * 204.16683 * 10 9 7 12 12 H 1.08999 * 111.00225 * 81.07063 * 11 10 9 13 13 N 1.46508 * 111.00483 * 204.91766 * 11 10 9 14 14 C 1.36932 * 119.99623 * 267.19624 * 13 11 10 15 15 H 1.07999 * 120.00685 * 0.02562 * 14 13 11 16 16 C 1.38821 * 119.99491 * 180.02562 * 14 13 11 17 17 N 1.31619 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99825 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47049 * 60.00230 * 18 16 14 20 20 H 1.48500 * 109.46780 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47031 * 299.99858 * 18 16 14 22 22 C 1.55149 * 101.58282 * 322.99466 * 11 10 9 23 23 H 1.09000 * 110.87451 * 153.93915 * 22 11 10 24 24 N 1.46499 * 110.71945 * 277.13708 * 22 11 10 25 25 C 1.35311 * 125.87102 * 80.27072 * 24 22 11 26 26 C 1.35349 * 106.18014 * 180.18691 * 25 24 22 27 27 N 1.33776 * 106.49589 * 359.58896 * 26 25 24 28 28 N 1.28634 * 108.88224 * 0.26432 * 27 26 25 29 29 C 1.47021 * 125.64670 * 180.02562 * 9 7 4 30 30 H 1.08997 * 109.47364 * 300.00302 * 1 2 3 31 31 H 1.09000 * 109.46833 * 60.00354 * 1 2 3 32 32 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47753 * 59.99636 * 3 2 1 34 34 H 1.09003 * 109.47038 * 299.99937 * 3 2 1 35 35 H 1.08998 * 109.47109 * 180.02562 * 6 4 3 36 36 H 1.09002 * 109.47427 * 300.00393 * 6 4 3 37 37 H 1.09006 * 109.46951 * 60.00007 * 6 4 3 38 38 H 1.09002 * 110.37027 * 323.01203 * 10 9 7 39 39 H 1.09007 * 110.36440 * 85.21768 * 10 9 7 40 40 H 0.96996 * 119.99504 * 87.20090 * 13 11 10 41 41 H 0.96997 * 120.00309 * 180.02562 * 17 16 14 42 42 H 1.08005 * 126.91425 * 0.04514 * 25 24 22 43 43 H 1.08002 * 126.75754 * 179.85677 * 26 25 24 44 44 H 1.08989 * 109.88522 * 59.48430 * 29 9 7 45 45 H 1.09005 * 109.88138 * 298.31176 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1693 1.3953 0.8427 6 6 4.3184 1.3915 -1.3064 7 6 4.0818 3.4029 0.1244 8 8 3.1952 4.2267 0.2038 9 7 5.3708 3.7961 0.1459 10 6 6.5423 2.9056 0.0580 11 6 7.6926 3.6958 0.7303 12 1 7.6429 3.6104 1.8158 13 7 8.9965 3.2529 0.2300 14 6 9.6866 2.2726 0.8917 15 1 9.2696 1.8256 1.7821 16 6 10.9223 1.8534 0.4180 17 7 11.4307 2.3985 -0.6668 18 14 11.8635 0.5156 1.3202 19 1 11.0506 -0.7268 1.3507 20 1 13.1444 0.2513 0.6168 21 1 12.1434 0.9584 2.7097 22 6 7.3842 5.1455 0.2717 23 1 7.7836 5.8705 0.9808 24 7 7.9173 5.3889 -1.0710 25 6 7.3379 5.0124 -2.2344 26 6 8.1647 5.4318 -3.2205 27 7 9.1914 6.0445 -2.6205 28 7 9.0149 6.0020 -1.3470 29 6 5.8414 5.1841 0.2624 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8031 2.2372 0.8899 34 1 1.8031 2.2371 -0.8900 35 1 5.4014 1.5140 -1.3057 36 1 4.0728 0.3333 -1.3959 37 1 3.8912 1.9361 -2.1485 38 1 6.3543 1.9770 0.5969 39 1 6.7823 2.6962 -0.9846 40 1 9.3708 3.6542 -0.5698 41 1 12.2939 2.1053 -0.9981 42 1 6.4047 4.4816 -2.3524 43 1 8.0214 5.3016 -4.2831 44 1 5.4758 5.6228 1.1907 45 1 5.4905 5.7672 -0.5892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129704125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = 92.646227 kcal Electronic energy + Delta-G solvation = -28267.002528 eV Core-core repulsion = 24449.155807 eV Total energy + Delta-G solvation = -3817.846722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.91118 -40.36380 -38.04445 -34.84215 -34.36178 -33.51592 -31.33764 -30.61073 -29.65988 -29.28121 -27.91363 -27.21829 -25.12738 -23.82797 -22.76918 -22.26156 -21.43615 -20.21917 -19.23713 -17.88012 -17.50535 -17.31105 -16.16736 -15.98586 -15.65228 -15.53358 -15.04361 -14.71339 -14.62093 -14.07851 -13.99298 -13.79973 -13.73508 -13.63217 -13.41860 -13.08318 -13.00124 -12.68239 -12.44117 -12.32984 -12.23448 -11.72477 -11.47593 -11.45075 -11.21119 -11.17942 -11.02800 -10.91133 -10.49922 -10.29281 -10.26027 -10.00779 -9.88927 -9.64923 -9.17492 -8.93602 -8.74680 -7.92645 -7.30175 -5.95226 -3.31842 1.34293 2.02085 2.29351 2.48410 2.61110 2.88172 3.05823 3.33140 3.37920 3.40150 4.07149 4.34870 4.41602 4.50130 4.59719 4.65257 4.82481 4.82723 4.84470 4.89722 5.06117 5.12807 5.25890 5.29061 5.36831 5.38743 5.41971 5.44432 5.47669 5.59753 5.63005 5.68517 5.75956 5.81057 5.91932 6.06279 6.07430 6.17121 6.29588 6.53798 6.98066 7.35879 7.48830 7.99169 8.17144 8.98230 9.30228 9.76878 10.11132 11.24360 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003756 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.588493 B = 7453.777030 C = 9347.930238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.257 6.257 3 C -0.064 4.064 4 C -0.089 4.089 5 H 0.108 0.892 6 C -0.156 4.156 7 C 0.541 3.459 8 O -0.548 6.548 9 N -0.612 5.612 10 C 0.062 3.938 11 C 0.167 3.833 12 H 0.094 0.906 13 N -0.703 5.703 14 C -0.269 4.269 15 H 0.075 0.925 16 C 0.003 3.997 17 N -0.915 5.915 18 Si 0.911 3.089 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.112 3.888 23 H 0.133 0.867 24 N -0.270 5.270 25 C -0.050 4.050 26 C -0.054 4.054 27 N -0.272 5.272 28 N -0.065 5.065 29 C 0.106 3.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.393 0.607 41 H 0.261 0.739 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.094 0.906 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 -0.494 0.031 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.031 6.031 3 C -0.213 4.213 4 C -0.111 4.111 5 H 0.126 0.874 6 C -0.213 4.213 7 C 0.328 3.672 8 O -0.425 6.425 9 N -0.347 5.347 10 C -0.064 4.064 11 C 0.051 3.949 12 H 0.111 0.889 13 N -0.343 5.343 14 C -0.400 4.400 15 H 0.093 0.907 16 C -0.196 4.196 17 N -0.560 5.560 18 Si 0.741 3.259 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.209 1.209 22 C 0.008 3.992 23 H 0.151 0.849 24 N -0.063 5.063 25 C -0.201 4.201 26 C -0.211 4.211 27 N -0.137 5.137 28 N -0.045 5.045 29 C -0.018 4.018 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.229 0.771 41 H 0.071 0.929 42 H 0.194 0.806 43 H 0.200 0.800 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.003 -0.367 0.736 18.022 hybrid contribution -1.197 -0.354 -0.225 1.269 sum -19.201 -0.721 0.510 19.221 Atomic orbital electron populations 1.23385 0.94346 1.06426 1.04982 1.86874 1.07182 1.10988 1.98066 1.23206 0.97882 0.93898 1.06271 1.20950 0.94555 0.93261 1.02317 0.87429 1.22022 1.02342 1.02361 0.94602 1.20135 0.80733 0.90555 0.75776 1.90696 1.46309 1.54775 1.50764 1.48465 1.05711 1.08093 1.72421 1.23851 0.84995 0.95041 1.02492 1.21684 0.87442 0.87423 0.98314 0.88863 1.42329 1.14982 1.44727 1.32293 1.19129 1.00136 1.12873 1.07812 0.90676 1.24852 0.97560 0.99676 0.97511 1.69683 1.19225 1.44037 1.23053 0.86240 0.79308 0.81422 0.78959 1.20943 1.21487 1.20923 1.23210 0.92823 1.03036 0.80165 0.84946 1.47223 1.15362 1.36315 1.07434 1.23388 1.03336 1.07887 0.85472 1.23458 0.93128 1.03685 1.00862 1.75105 1.21690 1.18519 0.98417 1.78387 1.01470 1.14065 1.10561 1.22163 0.91051 0.84727 1.03846 0.90506 0.90473 0.88080 0.89245 0.89413 0.90531 0.90318 0.92073 0.89787 0.90481 0.77102 0.92908 0.80562 0.79993 0.88797 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.76 101.05 1.09 0.25 16 2 S -0.26 -2.49 21.19 -107.50 -2.28 -4.76 16 3 C -0.06 -0.64 4.73 37.16 0.18 -0.47 16 4 C -0.09 -0.94 2.07 -91.77 -0.19 -1.13 16 5 H 0.11 1.12 7.85 -51.93 -0.41 0.71 16 6 C -0.16 -1.59 8.83 37.16 0.33 -1.26 16 7 C 0.54 6.82 7.21 -10.99 -0.08 6.74 16 8 O -0.55 -8.35 16.25 5.55 0.09 -8.26 16 9 N -0.61 -7.47 3.32 -170.52 -0.57 -8.03 16 10 C 0.06 0.86 4.32 -2.53 -0.01 0.85 16 11 C 0.17 2.72 3.58 -65.78 -0.24 2.49 16 12 H 0.09 1.46 8.09 -51.93 -0.42 1.03 16 13 N -0.70 -15.85 5.21 -51.35 -0.27 -16.11 16 14 C -0.27 -6.82 9.96 -15.06 -0.15 -6.97 16 15 H 0.08 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 17 N -0.92 -26.82 13.06 55.49 0.72 -26.09 16 18 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.11 1.58 3.97 -66.10 -0.26 1.32 16 23 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 24 N -0.27 -4.46 2.24 -52.99 -0.12 -4.58 16 25 C -0.05 -0.75 9.23 -17.05 -0.16 -0.91 16 26 C -0.05 -0.87 12.05 -17.73 -0.21 -1.09 16 27 N -0.27 -5.41 12.41 30.24 0.38 -5.03 16 28 N -0.07 -1.31 12.58 60.35 0.76 -0.55 16 29 C 0.11 1.25 5.95 -3.06 -0.02 1.23 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.09 0.93 7.95 -51.92 -0.41 0.52 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.08 0.84 4.99 -51.93 -0.26 0.58 16 36 H 0.08 0.79 7.13 -51.93 -0.37 0.42 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.12 7.36 -51.93 -0.38 0.74 16 39 H 0.08 1.16 6.11 -51.92 -0.32 0.84 16 40 H 0.39 9.86 6.22 -40.82 -0.25 9.60 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.18 2.19 7.60 -52.48 -0.40 1.79 16 43 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.09 0.98 8.14 -51.94 -0.42 0.55 16 45 H 0.08 0.94 7.40 -51.93 -0.38 0.56 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -32.26 377.18 -6.98 -39.24 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.53 Total: 11.28 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 0.18 Total: 1.04 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.91 Total: -60.40 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.28 Total: -4.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.26 -6.98 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129704125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.883 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds