Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99897 * 2 1 4 4 C 1.52999 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46755 * 305.00140 * 4 3 2 6 6 C 1.53004 * 109.47089 * 64.99494 * 4 3 2 7 7 C 1.50692 * 109.47456 * 184.99755 * 4 3 2 8 8 O 1.21287 * 119.99985 * 359.97438 * 7 4 3 9 9 N 1.34780 * 120.00224 * 180.02562 * 7 4 3 10 10 C 1.47419 * 125.64726 * 359.95103 * 9 7 4 11 11 C 1.54906 * 104.83392 * 204.16683 * 10 9 7 12 12 H 1.08999 * 111.00225 * 81.07063 * 11 10 9 13 13 N 1.46508 * 111.00483 * 204.91766 * 11 10 9 14 14 C 1.36932 * 119.99623 * 267.19624 * 13 11 10 15 15 H 1.07999 * 120.00685 * 0.02562 * 14 13 11 16 16 C 1.38821 * 119.99491 * 180.02562 * 14 13 11 17 17 N 1.31619 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99825 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47049 * 60.00230 * 18 16 14 20 20 H 1.48500 * 109.46780 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47031 * 299.99858 * 18 16 14 22 22 C 1.55149 * 101.58282 * 322.99466 * 11 10 9 23 23 H 1.09000 * 110.87451 * 153.93915 * 22 11 10 24 24 N 1.46499 * 110.71945 * 277.13708 * 22 11 10 25 25 C 1.35311 * 125.87102 * 80.27072 * 24 22 11 26 26 C 1.35349 * 106.18014 * 180.18691 * 25 24 22 27 27 N 1.33776 * 106.49589 * 359.58896 * 26 25 24 28 28 N 1.28634 * 108.88224 * 0.26432 * 27 26 25 29 29 C 1.47021 * 125.64670 * 180.02562 * 9 7 4 30 30 H 1.08997 * 109.47364 * 300.00302 * 1 2 3 31 31 H 1.09000 * 109.46833 * 60.00354 * 1 2 3 32 32 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47753 * 59.99636 * 3 2 1 34 34 H 1.09003 * 109.47038 * 299.99937 * 3 2 1 35 35 H 1.08998 * 109.47109 * 180.02562 * 6 4 3 36 36 H 1.09002 * 109.47427 * 300.00393 * 6 4 3 37 37 H 1.09006 * 109.46951 * 60.00007 * 6 4 3 38 38 H 1.09002 * 110.37027 * 323.01203 * 10 9 7 39 39 H 1.09007 * 110.36440 * 85.21768 * 10 9 7 40 40 H 0.96996 * 119.99504 * 87.20090 * 13 11 10 41 41 H 0.96997 * 120.00309 * 180.02562 * 17 16 14 42 42 H 1.08005 * 126.91425 * 0.04514 * 25 24 22 43 43 H 1.08002 * 126.75754 * 179.85677 * 26 25 24 44 44 H 1.08989 * 109.88522 * 59.48430 * 29 9 7 45 45 H 1.09005 * 109.88138 * 298.31176 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1693 1.3953 0.8427 6 6 4.3184 1.3915 -1.3064 7 6 4.0818 3.4029 0.1244 8 8 3.1952 4.2267 0.2038 9 7 5.3708 3.7961 0.1459 10 6 6.5423 2.9056 0.0580 11 6 7.6926 3.6958 0.7303 12 1 7.6429 3.6104 1.8158 13 7 8.9965 3.2529 0.2300 14 6 9.6866 2.2726 0.8917 15 1 9.2696 1.8256 1.7821 16 6 10.9223 1.8534 0.4180 17 7 11.4307 2.3985 -0.6668 18 14 11.8635 0.5156 1.3202 19 1 11.0506 -0.7268 1.3507 20 1 13.1444 0.2513 0.6168 21 1 12.1434 0.9584 2.7097 22 6 7.3842 5.1455 0.2717 23 1 7.7836 5.8705 0.9808 24 7 7.9173 5.3889 -1.0710 25 6 7.3379 5.0124 -2.2344 26 6 8.1647 5.4318 -3.2205 27 7 9.1914 6.0445 -2.6205 28 7 9.0149 6.0020 -1.3470 29 6 5.8414 5.1841 0.2624 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8031 2.2372 0.8899 34 1 1.8031 2.2371 -0.8900 35 1 5.4014 1.5140 -1.3057 36 1 4.0728 0.3333 -1.3959 37 1 3.8912 1.9361 -2.1485 38 1 6.3543 1.9770 0.5969 39 1 6.7823 2.6962 -0.9846 40 1 9.3708 3.6542 -0.5698 41 1 12.2939 2.1053 -0.9981 42 1 6.4047 4.4816 -2.3524 43 1 8.0214 5.3016 -4.2831 44 1 5.4758 5.6228 1.1907 45 1 5.4905 5.7672 -0.5892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129704125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = 71.279547 kcal Electronic energy + Delta-G solvation = -28267.929057 eV Core-core repulsion = 24449.155807 eV Total energy + Delta-G solvation = -3818.773250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.21801 -41.44502 -39.23554 -36.00306 -35.77009 -34.78552 -33.06311 -31.90278 -30.84770 -29.88801 -29.26803 -28.04636 -26.35957 -25.48604 -23.86301 -23.60372 -22.65716 -21.49597 -20.26647 -19.50677 -18.69512 -18.48381 -17.29932 -16.97189 -16.84776 -16.55531 -16.44860 -16.00335 -15.82827 -15.32705 -15.24957 -14.78102 -14.69769 -14.61379 -14.55875 -14.36430 -13.87908 -13.75326 -13.58976 -13.27136 -13.07831 -12.94018 -12.90179 -12.71742 -12.57830 -12.49454 -12.30038 -12.18673 -12.09403 -11.89972 -11.79947 -11.21837 -11.01321 -10.88832 -10.81950 -10.23828 -9.84680 -9.15198 -8.66199 -7.96724 -5.31019 0.63772 0.73716 1.40324 1.48311 1.49537 1.51156 1.57351 1.63614 1.73508 1.83457 2.52704 2.98006 3.23043 3.46980 3.52819 3.60466 3.69303 3.71779 3.79103 3.99470 4.09831 4.18814 4.21440 4.24878 4.34299 4.36494 4.37376 4.48039 4.51087 4.55769 4.63673 4.74576 4.84697 4.86987 4.90434 4.92238 5.01669 5.07093 5.27197 5.32139 5.49894 5.73502 6.19205 6.30395 6.97061 7.28660 7.63558 7.95906 8.17679 9.24338 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003756 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.588493 B = 7453.777030 C = 9347.930238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.288 6.288 3 C -0.054 4.054 4 C -0.085 4.085 5 H 0.113 0.887 6 C -0.149 4.149 7 C 0.546 3.454 8 O -0.570 6.570 9 N -0.606 5.606 10 C 0.081 3.919 11 C 0.157 3.843 12 H 0.106 0.894 13 N -0.722 5.722 14 C -0.252 4.252 15 H 0.091 0.909 16 C -0.066 4.066 17 N -0.963 5.963 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.304 1.304 21 H -0.277 1.277 22 C 0.113 3.887 23 H 0.142 0.858 24 N -0.266 5.266 25 C -0.039 4.039 26 C -0.062 4.062 27 N -0.310 5.310 28 N -0.109 5.109 29 C 0.115 3.885 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.378 0.622 41 H 0.250 0.750 42 H 0.205 0.795 43 H 0.215 0.785 44 H 0.116 0.884 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.236 -1.299 0.842 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.063 6.063 3 C -0.203 4.203 4 C -0.107 4.107 5 H 0.130 0.870 6 C -0.207 4.207 7 C 0.334 3.666 8 O -0.449 6.449 9 N -0.340 5.340 10 C -0.044 4.044 11 C 0.044 3.956 12 H 0.123 0.877 13 N -0.361 5.361 14 C -0.383 4.383 15 H 0.108 0.892 16 C -0.259 4.259 17 N -0.611 5.611 18 Si 0.800 3.200 19 H -0.198 1.198 20 H -0.231 1.231 21 H -0.203 1.203 22 C 0.010 3.990 23 H 0.160 0.840 24 N -0.060 5.060 25 C -0.191 4.191 26 C -0.219 4.219 27 N -0.175 5.175 28 N -0.088 5.088 29 C -0.009 4.009 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.212 0.788 41 H 0.058 0.942 42 H 0.222 0.778 43 H 0.231 0.769 44 H 0.134 0.866 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.793 -1.159 1.603 20.887 hybrid contribution -0.546 -0.086 -0.450 0.713 sum -21.339 -1.246 1.153 21.406 Atomic orbital electron populations 1.23459 0.91549 1.07517 1.05784 1.86969 1.10362 1.10834 1.98133 1.23080 0.97278 0.93988 1.05943 1.20951 0.95178 0.91817 1.02706 0.86960 1.21957 1.01680 1.02564 0.94474 1.20395 0.80182 0.91098 0.74909 1.90698 1.46767 1.55611 1.51860 1.48365 1.05310 1.07920 1.72366 1.23401 0.84384 0.94936 1.01711 1.21962 0.85656 0.88867 0.99092 0.87651 1.42447 1.17174 1.44578 1.31927 1.19611 0.99584 1.11850 1.07244 0.89165 1.25606 0.99169 1.02450 0.98662 1.69864 1.19334 1.46492 1.25457 0.85257 0.77495 0.79484 0.77730 1.19770 1.23079 1.20295 1.23321 0.94434 1.01717 0.79559 0.84003 1.47397 1.14609 1.35467 1.08510 1.23836 1.03747 1.06789 0.84695 1.24105 0.92239 1.02901 1.02703 1.75038 1.23483 1.20073 0.98870 1.78318 1.03252 1.16291 1.10919 1.22184 0.88879 0.84592 1.05249 0.89760 0.89638 0.86833 0.89689 0.89567 0.91299 0.90093 0.91685 0.88872 0.91349 0.78794 0.94154 0.77796 0.76874 0.86623 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.76 113.37 1.22 -0.06 16 2 S -0.29 -5.02 21.19 -56.49 -1.20 -6.22 16 3 C -0.05 -0.98 4.73 71.98 0.34 -0.64 16 4 C -0.08 -1.60 2.07 -11.54 -0.02 -1.62 16 5 H 0.11 2.05 7.85 -2.39 -0.02 2.04 16 6 C -0.15 -2.71 8.83 71.98 0.64 -2.08 16 7 C 0.55 12.29 7.21 87.65 0.63 12.93 16 8 O -0.57 -15.88 16.25 -3.05 -0.05 -15.93 16 9 N -0.61 -13.05 3.32 -811.80 -2.70 -15.75 16 10 C 0.08 2.06 4.32 86.85 0.38 2.43 16 11 C 0.16 4.85 3.58 46.38 0.17 5.02 16 12 H 0.11 3.03 8.09 -2.39 -0.02 3.01 16 13 N -0.72 -32.19 5.21 -316.38 -1.65 -33.84 16 14 C -0.25 -12.58 9.96 84.04 0.84 -11.74 16 15 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 16 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 17 N -0.96 -58.08 13.06 21.65 0.28 -57.79 16 18 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.11 3.00 3.97 46.18 0.18 3.18 16 23 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 24 N -0.27 -8.60 2.24 -321.55 -0.72 -9.32 16 25 C -0.04 -1.12 9.23 83.49 0.77 -0.35 16 26 C -0.06 -1.94 12.05 83.73 1.01 -0.93 16 27 N -0.31 -12.53 12.41 -58.25 -0.72 -13.25 16 28 N -0.11 -4.44 12.58 37.02 0.47 -3.97 16 29 C 0.11 2.37 5.95 86.73 0.52 2.89 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.36 4.99 -2.39 -0.01 1.35 16 36 H 0.08 1.46 7.13 -2.39 -0.02 1.45 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 2.23 7.36 -2.39 -0.02 2.21 16 39 H 0.07 1.91 6.11 -2.38 -0.01 1.90 16 40 H 0.38 19.20 6.22 -92.71 -0.58 18.62 16 41 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.21 4.50 7.60 -2.91 -0.02 4.48 16 43 H 0.21 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 1.75 7.40 -2.38 -0.02 1.73 16 Total: -1.00 -71.17 377.18 3.30 -67.87 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.43 Total: 36.29 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 7.13 Total: 5.93 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.04 Total: -133.93 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.05 Total: -15.93 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.20 Total: -6.22 kcal Total: -71.17 3.30 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129704125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.146 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds