Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47324 * 240.00137 * 2 1 3 5 5 N 1.46504 * 109.47389 * 120.00202 * 2 1 3 6 6 C 1.34775 * 119.99741 * 60.00004 * 5 2 1 7 7 O 1.21514 * 120.00245 * 359.97438 * 6 5 2 8 8 C 1.48161 * 120.00210 * 180.02562 * 6 5 2 9 9 C 1.40005 * 120.87826 * 355.42520 * 8 6 5 10 10 C 1.37984 * 119.16720 * 180.02562 * 9 8 6 11 11 N 1.31891 * 120.99910 * 359.97438 * 10 9 8 12 12 C 1.32325 * 121.94936 * 359.70257 * 11 10 9 13 13 N 1.39169 * 119.64349 * 180.29415 * 12 11 10 14 14 C 1.38385 * 120.00135 * 173.48932 * 13 12 11 15 15 C 1.38968 * 119.99894 * 300.88564 * 14 13 12 16 16 H 1.08000 * 119.99759 * 150.98663 * 15 14 13 17 17 C 1.40839 * 120.00347 * 330.98812 * 15 14 13 18 18 N 1.30333 * 120.00358 * 168.61644 * 17 15 14 19 19 Si 1.86809 * 119.99997 * 348.61790 * 17 15 14 20 20 H 1.48500 * 109.46850 * 85.26872 * 19 17 15 21 21 H 1.48497 * 109.46975 * 205.26550 * 19 17 15 22 22 H 1.48493 * 109.46868 * 325.26881 * 19 17 15 23 23 C 1.41146 * 119.99708 * 120.88653 * 14 13 12 24 24 C 1.43195 * 119.99470 * 185.23553 * 23 14 13 25 25 N 9.12121 * 76.78918 * 171.18102 * 2 1 3 26 26 C 1.43190 * 120.00091 * 5.23525 * 23 14 13 27 27 N 9.65208 * 101.53981 * 159.75686 * 2 1 3 28 28 C 1.39089 * 120.71308 * 0.58761 * 12 11 10 29 29 H 1.09003 * 109.46793 * 299.99961 * 1 2 3 30 30 H 1.09002 * 109.47262 * 59.99636 * 1 2 3 31 31 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47735 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47616 * 300.00224 * 3 2 1 34 34 H 1.09003 * 109.47142 * 60.00253 * 3 2 1 35 35 H 1.08996 * 109.46775 * 300.00307 * 4 2 1 36 36 H 1.09002 * 109.46766 * 59.99923 * 4 2 1 37 37 H 1.08993 * 109.47206 * 179.97438 * 4 2 1 38 38 H 0.96995 * 120.00397 * 239.99749 * 5 2 1 39 39 H 1.08001 * 120.41976 * 359.97438 * 9 8 6 40 40 H 1.07999 * 119.49853 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99970 * 353.49489 * 13 12 11 42 42 H 0.96997 * 120.00224 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.53485 * 179.70905 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 6 1.6928 -1.9810 1.4093 7 8 0.9938 -2.5714 0.6097 8 6 2.1862 -2.6794 2.6193 9 6 3.0682 -2.0476 3.5042 10 6 3.5059 -2.7312 4.6200 11 7 3.1055 -3.9644 4.8615 12 6 2.2681 -4.5989 4.0571 13 7 1.8723 -5.8980 4.3615 14 6 0.8961 -6.5196 3.6028 15 6 -0.3703 -5.9561 3.5032 16 1 -0.9650 -6.1177 2.6162 17 6 -0.8783 -5.1743 4.5588 18 7 -1.9589 -4.4668 4.3843 19 14 -0.0033 -5.1514 6.2091 20 1 1.0832 -4.1395 6.1792 21 1 -0.9732 -4.8048 7.2788 22 1 0.5757 -6.4915 6.4810 23 6 1.1867 -7.7260 2.9302 24 6 0.2146 -8.3104 2.0561 25 7 -0.5546 -8.7748 1.3614 26 6 2.4535 -8.3654 3.1219 27 7 3.4608 -8.8728 3.2722 28 6 1.7839 -3.9838 2.9074 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.5760 -0.2193 1.8346 39 1 3.4025 -1.0381 3.3154 40 1 4.1866 -2.2491 5.3059 41 1 2.2806 -6.3677 5.1055 42 1 -2.3085 -3.9280 5.1112 43 1 1.1042 -4.5061 2.2504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158212893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = 65.038818 kcal Electronic energy + Delta-G solvation = -29015.346891 eV Core-core repulsion = 25060.859071 eV Total energy + Delta-G solvation = -3954.487820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.70439 -39.64237 -37.53493 -36.49143 -35.33539 -34.77850 -34.04871 -33.01789 -31.40012 -31.17145 -28.82521 -27.57314 -27.39009 -27.31292 -24.68896 -23.30166 -21.36941 -21.14169 -19.70269 -19.22963 -18.15239 -17.50577 -17.03864 -16.32466 -15.96019 -15.64392 -15.49526 -15.03800 -14.79834 -14.31291 -14.17992 -13.94903 -13.69355 -13.60586 -13.30450 -12.96199 -12.78271 -12.61046 -12.53489 -12.26018 -12.21338 -11.96947 -11.83853 -11.73213 -11.64811 -11.60321 -11.53052 -11.27233 -11.17326 -11.15115 -11.02363 -10.64927 -10.29673 -9.85851 -9.71027 -9.54866 -9.26336 -9.11541 -8.47378 -7.81274 -7.35442 -5.47867 0.99195 1.39789 1.96486 2.74049 2.80226 2.83457 3.00269 3.11057 3.34789 3.45680 3.77366 3.98944 4.08291 4.21457 4.26388 4.48922 4.75214 4.75785 4.78559 4.90666 5.07279 5.12038 5.21226 5.32444 5.40046 5.45044 5.45236 5.60100 5.64436 5.66528 5.82640 5.87059 5.88418 6.05459 6.08279 6.24157 6.32159 6.32360 6.36886 6.51740 6.63119 7.01510 7.10664 7.43100 7.49792 7.55396 7.83946 7.89764 8.26890 8.38569 8.85105 9.07702 9.13769 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004084 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.621809 B = 6854.288209 C = 7218.942923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.170 3.830 3 C -0.154 4.154 4 C -0.165 4.165 5 N -0.721 5.721 6 C 0.563 3.437 7 O -0.512 6.512 8 C -0.062 4.062 9 C -0.206 4.206 10 C 0.134 3.866 11 N -0.522 5.522 12 C 0.406 3.594 13 N -0.668 5.668 14 C 0.338 3.662 15 C -0.356 4.356 16 H 0.126 0.874 17 C 0.074 3.926 18 N -0.722 5.722 19 Si 0.914 3.086 20 H -0.239 1.239 21 H -0.285 1.285 22 H -0.250 1.250 23 C -0.290 4.290 24 C 0.323 3.677 25 N -0.520 5.520 26 C 0.306 3.694 27 N -0.526 5.526 28 C -0.138 4.138 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.398 0.602 39 H 0.129 0.871 40 H 0.157 0.843 41 H 0.408 0.592 42 H 0.305 0.695 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 18.814 0.769 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.085 3.915 3 C -0.212 4.212 4 C -0.223 4.223 5 N -0.375 5.375 6 C 0.350 3.650 7 O -0.387 6.387 8 C -0.073 4.073 9 C -0.230 4.230 10 C -0.023 4.023 11 N -0.239 5.239 12 C 0.172 3.828 13 N -0.299 5.299 14 C 0.235 3.765 15 C -0.383 4.383 16 H 0.144 0.856 17 C -0.158 4.158 18 N -0.340 5.340 19 Si 0.738 3.262 20 H -0.163 1.163 21 H -0.212 1.212 22 H -0.173 1.173 23 C -0.308 4.308 24 C 0.014 3.986 25 N -0.201 5.201 26 C -0.001 4.001 27 N -0.208 5.208 28 C -0.163 4.163 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.233 0.767 39 H 0.147 0.853 40 H 0.175 0.825 41 H 0.247 0.753 42 H 0.117 0.883 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.257 16.627 -0.032 17.438 hybrid contribution 0.211 1.073 0.902 1.418 sum 5.468 17.700 0.869 18.546 Atomic orbital electron populations 1.22246 0.94040 1.04535 1.01582 1.20331 0.94612 0.91539 0.85063 1.22087 1.01504 0.94598 1.03014 1.22243 1.00855 1.03122 0.96123 1.46033 1.54242 1.11872 1.25381 1.18201 0.80003 0.81468 0.85351 1.90756 1.36257 1.65987 1.45721 1.20005 0.97674 0.94617 0.95039 1.21854 1.02194 1.01366 0.97541 1.22196 0.96345 0.88842 0.94886 1.66968 1.14793 1.10961 1.31184 1.17956 0.90225 0.85370 0.89203 1.41982 1.40755 1.11916 1.35217 1.16823 0.86376 0.88481 0.84841 1.20105 0.96705 1.18106 1.03376 0.85612 1.26696 0.94891 0.91255 1.02919 1.69396 1.15957 1.12926 1.35680 0.86183 0.79862 0.82483 0.77712 1.16253 1.21170 1.17340 1.12752 0.90423 1.03613 1.24016 1.24539 0.91621 0.91526 0.90929 1.81065 1.11222 1.11980 1.15870 1.25223 0.91535 0.91923 0.91463 1.81163 1.12749 1.11633 1.15304 1.21906 1.02142 0.94645 0.97595 0.92699 0.91975 0.89900 0.91979 0.90838 0.91950 0.90004 0.91947 0.92758 0.76677 0.85282 0.82536 0.75329 0.88338 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.40 37.15 0.31 -1.53 16 2 C 0.17 1.68 1.06 -131.82 -0.14 1.54 16 3 C -0.15 -1.02 8.59 37.16 0.32 -0.70 16 4 C -0.17 -1.77 8.40 37.16 0.31 -1.45 16 5 N -0.72 -7.75 5.06 -48.44 -0.25 -7.99 16 6 C 0.56 8.41 7.21 -12.19 -0.09 8.32 16 7 O -0.51 -9.43 12.65 5.35 0.07 -9.36 16 8 C -0.06 -0.95 5.90 -104.68 -0.62 -1.57 16 9 C -0.21 -2.44 9.60 -39.01 -0.37 -2.82 16 10 C 0.13 1.71 11.16 -17.62 -0.20 1.51 16 11 N -0.52 -8.49 9.50 -12.45 -0.12 -8.61 16 12 C 0.41 7.27 5.21 -154.94 -0.81 6.46 16 13 N -0.67 -12.47 2.28 -9.75 -0.02 -12.49 16 14 C 0.34 6.86 4.43 -83.53 -0.37 6.49 16 15 C -0.36 -7.57 7.10 -38.33 -0.27 -7.84 16 16 H 0.13 2.96 7.37 -52.49 -0.39 2.57 16 17 C 0.07 1.51 5.30 -17.20 -0.09 1.42 16 18 N -0.72 -15.13 13.90 55.60 0.77 -14.36 16 19 Si 0.91 16.37 24.38 -169.99 -4.14 12.22 16 20 H -0.24 -4.21 5.47 56.52 0.31 -3.90 16 21 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.25 -4.46 6.82 56.52 0.39 -4.08 16 23 C -0.29 -6.26 5.88 -104.95 -0.62 -6.87 16 24 C 0.32 7.46 13.99 -22.48 -0.31 7.14 16 25 N -0.52 -12.63 18.54 41.83 0.78 -11.85 16 26 C 0.31 6.76 14.80 -22.42 -0.33 6.43 16 27 N -0.53 -12.10 18.55 41.91 0.78 -11.32 16 28 C -0.14 -2.49 8.36 -38.79 -0.32 -2.82 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.20 6.16 -51.93 -0.32 0.88 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 1.14 6.17 -51.93 -0.32 0.82 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.40 3.13 6.63 -40.82 -0.27 2.86 16 39 H 0.13 0.99 6.56 -52.49 -0.34 0.65 16 40 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.41 7.27 8.00 -40.82 -0.33 6.95 16 42 H 0.30 5.70 8.28 -40.82 -0.34 5.36 16 43 H 0.16 3.31 5.84 -52.48 -0.31 3.01 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -27.54 369.75 -5.07 -32.61 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -4.90 Total: 11.87 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -3.60 Total: 13.70 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: 1.94 Total: -66.62 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -4.14 Total: 12.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.54 -5.07 -32.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.647 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds