Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47324 * 240.00137 * 2 1 3 5 5 N 1.46504 * 109.47389 * 120.00202 * 2 1 3 6 6 C 1.34775 * 119.99741 * 60.00004 * 5 2 1 7 7 O 1.21514 * 120.00245 * 359.97438 * 6 5 2 8 8 C 1.48161 * 120.00210 * 180.02562 * 6 5 2 9 9 C 1.40005 * 120.87826 * 355.42520 * 8 6 5 10 10 C 1.37984 * 119.16720 * 180.02562 * 9 8 6 11 11 N 1.31891 * 120.99910 * 359.97438 * 10 9 8 12 12 C 1.32325 * 121.94936 * 359.70257 * 11 10 9 13 13 N 1.39169 * 119.64349 * 180.29415 * 12 11 10 14 14 C 1.38385 * 120.00135 * 173.48932 * 13 12 11 15 15 C 1.38968 * 119.99894 * 300.88564 * 14 13 12 16 16 H 1.08000 * 119.99759 * 150.98663 * 15 14 13 17 17 C 1.40839 * 120.00347 * 330.98812 * 15 14 13 18 18 N 1.30333 * 120.00358 * 168.61644 * 17 15 14 19 19 Si 1.86809 * 119.99997 * 348.61790 * 17 15 14 20 20 H 1.48500 * 109.46850 * 85.26872 * 19 17 15 21 21 H 1.48497 * 109.46975 * 205.26550 * 19 17 15 22 22 H 1.48493 * 109.46868 * 325.26881 * 19 17 15 23 23 C 1.41146 * 119.99708 * 120.88653 * 14 13 12 24 24 C 1.43195 * 119.99470 * 185.23553 * 23 14 13 25 25 N 9.12121 * 76.78918 * 171.18102 * 2 1 3 26 26 C 1.43190 * 120.00091 * 5.23525 * 23 14 13 27 27 N 9.65208 * 101.53981 * 159.75686 * 2 1 3 28 28 C 1.39089 * 120.71308 * 0.58761 * 12 11 10 29 29 H 1.09003 * 109.46793 * 299.99961 * 1 2 3 30 30 H 1.09002 * 109.47262 * 59.99636 * 1 2 3 31 31 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47735 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47616 * 300.00224 * 3 2 1 34 34 H 1.09003 * 109.47142 * 60.00253 * 3 2 1 35 35 H 1.08996 * 109.46775 * 300.00307 * 4 2 1 36 36 H 1.09002 * 109.46766 * 59.99923 * 4 2 1 37 37 H 1.08993 * 109.47206 * 179.97438 * 4 2 1 38 38 H 0.96995 * 120.00397 * 239.99749 * 5 2 1 39 39 H 1.08001 * 120.41976 * 359.97438 * 9 8 6 40 40 H 1.07999 * 119.49853 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99970 * 353.49489 * 13 12 11 42 42 H 0.96997 * 120.00224 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.53485 * 179.70905 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 6 1.6928 -1.9810 1.4093 7 8 0.9938 -2.5714 0.6097 8 6 2.1862 -2.6794 2.6193 9 6 3.0682 -2.0476 3.5042 10 6 3.5059 -2.7312 4.6200 11 7 3.1055 -3.9644 4.8615 12 6 2.2681 -4.5989 4.0571 13 7 1.8723 -5.8980 4.3615 14 6 0.8961 -6.5196 3.6028 15 6 -0.3703 -5.9561 3.5032 16 1 -0.9650 -6.1177 2.6162 17 6 -0.8783 -5.1743 4.5588 18 7 -1.9589 -4.4668 4.3843 19 14 -0.0033 -5.1514 6.2091 20 1 1.0832 -4.1395 6.1792 21 1 -0.9732 -4.8048 7.2788 22 1 0.5757 -6.4915 6.4810 23 6 1.1867 -7.7260 2.9302 24 6 0.2146 -8.3104 2.0561 25 7 -0.5546 -8.7748 1.3614 26 6 2.4535 -8.3654 3.1219 27 7 3.4608 -8.8728 3.2722 28 6 1.7839 -3.9838 2.9074 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.5760 -0.2193 1.8346 39 1 3.4025 -1.0381 3.3154 40 1 4.1866 -2.2491 5.3059 41 1 2.2806 -6.3677 5.1055 42 1 -2.3085 -3.9280 5.1112 43 1 1.1042 -4.5061 2.2504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158212893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = 47.611066 kcal Electronic energy + Delta-G solvation = -29016.102615 eV Core-core repulsion = 25060.859071 eV Total energy + Delta-G solvation = -3955.243544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88396 -40.79973 -39.00837 -37.49802 -37.08444 -36.62302 -35.62492 -34.22546 -32.65578 -32.42891 -30.15166 -29.11091 -28.21242 -28.19391 -25.84121 -24.60991 -22.79434 -22.32567 -20.98148 -20.52342 -19.46223 -19.08600 -18.39768 -17.89533 -17.03382 -16.92452 -16.59255 -16.17220 -16.00396 -15.42094 -15.33145 -14.98892 -14.93658 -14.72297 -14.67090 -14.51670 -14.46685 -14.30521 -13.62210 -13.48685 -13.46202 -13.26088 -13.15813 -13.04004 -12.99750 -12.89098 -12.88059 -12.70630 -12.53004 -12.23241 -12.09890 -11.99955 -11.73657 -11.17332 -10.98297 -10.79076 -10.45107 -10.09775 -10.03082 -9.41218 -8.75836 -7.23931 -0.19572 0.09276 0.49090 1.24033 1.37421 1.41556 1.84459 1.93015 1.94279 2.00205 2.10009 2.14016 2.43959 2.52064 2.97523 3.28064 3.54999 3.63133 3.72776 3.91982 3.98292 4.01870 4.14494 4.15729 4.28369 4.36760 4.65900 4.70547 4.73647 4.75729 4.80710 4.88255 4.91504 4.99376 5.02892 5.17126 5.22422 5.26450 5.40489 5.41825 5.44336 5.59523 5.63535 5.75223 5.96233 6.31363 6.43566 6.58769 7.03056 7.11698 7.23157 7.23781 7.58110 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004084 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.621809 B = 6854.288209 C = 7218.942923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 C -0.146 4.146 4 C -0.164 4.164 5 N -0.700 5.700 6 C 0.557 3.443 7 O -0.559 6.559 8 C -0.071 4.071 9 C -0.177 4.177 10 C 0.137 3.863 11 N -0.530 5.530 12 C 0.387 3.613 13 N -0.672 5.672 14 C 0.357 3.643 15 C -0.360 4.360 16 H 0.092 0.908 17 C 0.054 3.946 18 N -0.747 5.747 19 Si 0.959 3.041 20 H -0.229 1.229 21 H -0.278 1.278 22 H -0.249 1.249 23 C -0.302 4.302 24 C 0.327 3.673 25 N -0.549 5.549 26 C 0.316 3.684 27 N -0.540 5.540 28 C -0.170 4.170 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.416 0.584 39 H 0.182 0.818 40 H 0.208 0.792 41 H 0.412 0.588 42 H 0.317 0.683 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 22.833 2.666 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 C -0.203 4.203 4 C -0.222 4.222 5 N -0.354 5.354 6 C 0.343 3.657 7 O -0.437 6.437 8 C -0.082 4.082 9 C -0.199 4.199 10 C -0.020 4.020 11 N -0.247 5.247 12 C 0.156 3.844 13 N -0.304 5.304 14 C 0.253 3.747 15 C -0.387 4.387 16 H 0.110 0.890 17 C -0.176 4.176 18 N -0.365 5.365 19 Si 0.780 3.220 20 H -0.152 1.152 21 H -0.205 1.205 22 H -0.173 1.173 23 C -0.320 4.320 24 C 0.019 3.981 25 N -0.232 5.232 26 C 0.009 3.991 27 N -0.223 5.223 28 C -0.195 4.195 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.199 0.801 40 H 0.224 0.776 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.765 20.698 1.868 22.185 hybrid contribution -0.560 0.047 0.233 0.608 sum 7.205 20.745 2.101 22.061 Atomic orbital electron populations 1.22221 0.95315 1.02024 1.02756 1.20518 0.93742 0.93580 0.84132 1.22043 1.02457 0.91483 1.04319 1.22214 1.01377 1.01059 0.97557 1.45920 1.53245 1.10331 1.25867 1.18364 0.79704 0.82637 0.84954 1.90758 1.38433 1.67335 1.47223 1.20224 0.98312 0.93849 0.95853 1.22391 0.99047 1.03017 0.95414 1.23138 0.95811 0.87532 0.95568 1.67038 1.14193 1.12515 1.30930 1.17901 0.91580 0.85137 0.89751 1.41828 1.40610 1.12631 1.35284 1.16539 0.86302 0.87589 0.84267 1.19977 0.96954 1.18885 1.02890 0.88995 1.27273 0.95074 0.90404 1.04827 1.69393 1.16700 1.13329 1.37126 0.85525 0.79318 0.82724 0.74470 1.15200 1.20453 1.17294 1.12816 0.90203 1.04446 1.24580 1.24833 0.91487 0.91018 0.90737 1.81035 1.12063 1.13055 1.17004 1.25145 0.91330 0.91516 0.91063 1.81151 1.13092 1.12096 1.15976 1.21666 1.03489 0.96348 0.98011 0.92158 0.90186 0.94182 0.90397 0.89608 0.90666 0.94063 0.90236 0.91772 0.74563 0.80065 0.77596 0.74875 0.87074 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 8.40 71.98 0.60 -2.98 16 2 C 0.17 2.93 1.06 3.60 0.00 2.94 16 3 C -0.15 -1.30 8.59 71.98 0.62 -0.68 16 4 C -0.16 -3.37 8.40 71.98 0.60 -2.77 16 5 N -0.70 -13.39 5.06 -425.46 -2.15 -15.54 16 6 C 0.56 16.58 7.21 86.88 0.63 17.20 16 7 O -0.56 -22.05 12.65 -3.76 -0.05 -22.10 16 8 C -0.07 -2.09 5.90 -19.90 -0.12 -2.21 16 9 C -0.18 -3.39 9.60 22.64 0.22 -3.17 16 10 C 0.14 2.81 11.16 84.62 0.94 3.75 16 11 N -0.53 -15.76 9.50 -193.30 -1.84 -17.59 16 12 C 0.39 13.67 5.21 133.02 0.69 14.36 16 13 N -0.67 -25.22 2.28 -184.76 -0.42 -25.64 16 14 C 0.36 15.10 4.43 39.00 0.17 15.27 16 15 C -0.36 -16.21 7.10 23.08 0.16 -16.05 16 16 H 0.09 4.72 7.37 -2.91 -0.02 4.70 16 17 C 0.05 2.26 5.30 85.55 0.45 2.71 16 18 N -0.75 -32.13 13.90 21.98 0.31 -31.82 16 19 Si 0.96 32.95 24.38 68.60 1.67 34.63 16 20 H -0.23 -7.47 5.47 99.48 0.54 -6.92 16 21 H -0.28 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.25 -8.52 6.82 99.48 0.68 -7.84 16 23 C -0.30 -13.58 5.88 -20.08 -0.12 -13.70 16 24 C 0.33 15.90 13.99 88.33 1.24 17.14 16 25 N -0.55 -28.02 18.54 19.00 0.35 -27.67 16 26 C 0.32 14.25 14.80 88.31 1.31 15.56 16 27 N -0.54 -24.97 18.55 19.03 0.35 -24.62 16 28 C -0.17 -6.30 8.36 22.78 0.19 -6.11 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.23 6.16 -2.39 -0.01 1.21 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.04 1.20 6.17 -2.39 -0.01 1.19 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 4.62 6.63 -92.71 -0.61 4.01 16 39 H 0.18 1.52 6.56 -2.91 -0.02 1.50 16 40 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.41 14.51 8.00 -92.71 -0.74 13.77 16 42 H 0.32 11.91 8.28 -92.71 -0.77 11.14 16 43 H 0.12 5.54 5.84 -2.91 -0.02 5.52 16 Total: -1.00 -65.91 369.75 5.38 -60.53 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.44 Total: 28.56 kcal Atomic # 6 Polarization: 33.67 SS G_CDS: 7.60 Total: 41.27 kcal Atomic # 7 Polarization: -139.49 SS G_CDS: -3.40 Total: -142.89 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 1.67 Total: 34.63 kcal Total: -65.91 5.38 -60.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.139 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds