Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99790 * 2 1 4 4 C 1.39152 * 120.50689 * 359.97438 * 3 2 1 5 5 C 1.38306 * 118.62999 * 180.02562 * 4 3 2 6 6 C 1.39937 * 119.59449 * 0.02562 * 5 4 3 7 7 N 1.38911 * 119.49319 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00318 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.46895 * 325.00406 * 8 7 6 10 10 C 1.53002 * 109.46489 * 85.00257 * 8 7 6 11 11 C 1.50698 * 109.47408 * 205.00012 * 8 7 6 12 12 N 1.30800 * 126.24955 * 314.69784 * 11 8 7 13 13 N 1.28676 * 110.29353 * 179.81399 * 12 11 8 14 14 C 1.32306 * 109.48287 * 0.45295 * 13 12 11 15 15 C 1.40819 * 133.47115 * 179.75664 * 14 13 12 16 16 C 1.36018 * 119.22771 * 179.97438 * 15 14 13 17 17 C 1.40553 * 119.74891 * 0.02562 * 16 15 14 18 18 C 1.34957 * 120.36169 * 359.97438 * 17 16 15 19 19 N 1.36064 * 126.24701 * 134.99681 * 11 8 7 20 20 N 1.31863 * 121.00864 * 359.71479 * 6 5 4 21 21 C 1.33824 * 121.47111 * 0.57294 * 20 6 5 22 22 C 1.40915 * 119.84802 * 179.71180 * 21 20 6 23 23 H 1.08002 * 120.00197 * 179.72939 * 22 21 20 24 24 C 1.40028 * 119.99903 * 359.44406 * 22 21 20 25 25 N 1.30774 * 120.00278 * 0.28207 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 180.27649 * 24 22 21 27 27 H 1.48496 * 109.47191 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47055 * 120.00250 * 26 24 22 29 29 H 1.48498 * 109.47283 * 240.00326 * 26 24 22 30 30 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46981 * 299.99570 * 1 2 3 32 32 H 1.08994 * 109.47365 * 59.99731 * 1 2 3 33 33 H 1.07999 * 120.68356 * 0.04328 * 4 3 2 34 34 H 1.08004 * 120.19988 * 179.97438 * 5 4 3 35 35 H 0.97007 * 119.99733 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.46433 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47620 * 299.99793 * 10 8 7 38 38 H 1.08997 * 109.47430 * 60.00477 * 10 8 7 39 39 H 1.07998 * 120.38583 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.13075 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.81981 * 180.02562 * 17 16 15 42 42 H 1.08002 * 119.74213 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3642 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0016 8 6 3.2734 6.0811 -0.0016 9 1 2.3652 5.9554 -0.5910 10 6 2.9017 6.4520 1.4355 11 6 4.1142 7.1783 -0.6020 12 7 5.3709 7.4236 -0.3351 13 7 5.7855 8.4284 -1.0238 14 6 4.7958 8.8898 -1.7708 15 6 4.6896 9.9508 -2.6907 16 6 3.5010 10.1734 -3.3134 17 6 2.4002 9.3461 -3.0315 18 6 2.5169 8.3331 -2.1475 19 7 3.7029 8.0980 -1.5165 20 7 4.0577 2.4892 0.0040 21 6 3.4543 1.2947 -0.0010 22 6 4.2291 0.1176 -0.0008 23 1 3.7447 -0.8477 -0.0004 24 6 5.6270 0.1995 -0.0072 25 7 6.2135 1.3683 -0.0077 26 14 6.6539 -1.3608 -0.0148 27 1 5.7566 -2.5440 -0.0134 28 1 7.5052 -1.3872 -1.2314 29 1 7.5164 -1.3917 1.1936 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 0.2176 2.3479 -0.0003 34 1 1.4099 4.5196 -0.0019 35 1 5.0027 4.8490 -0.0015 36 1 2.3362 7.3839 1.4355 37 1 2.2935 5.6585 1.8699 38 1 3.8099 6.5777 2.0249 39 1 5.5419 10.5804 -2.8992 40 1 3.4031 10.9832 -4.0212 41 1 1.4561 9.5216 -3.5256 42 1 1.6647 7.7033 -1.9388 43 1 7.1818 1.4251 -0.0118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162178193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = 124.563050 kcal Electronic energy + Delta-G solvation = -28532.095312 eV Core-core repulsion = 24580.188656 eV Total energy + Delta-G solvation = -3951.906656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.62771 -38.91186 -38.36744 -37.25556 -35.67840 -34.06464 -33.34577 -31.37736 -30.74125 -30.28135 -28.84532 -28.05258 -26.38798 -25.18578 -24.42501 -24.00720 -23.35310 -21.69778 -21.14663 -19.99201 -18.32180 -17.54447 -17.26816 -16.69033 -16.62058 -16.42470 -15.99080 -15.40839 -15.01702 -14.86610 -14.62886 -14.38484 -13.99958 -13.49685 -13.05436 -12.90643 -12.73045 -12.66636 -12.48367 -12.32648 -12.12635 -11.87340 -11.63089 -11.54647 -11.36658 -11.34244 -11.19323 -11.16025 -10.56634 -10.55405 -10.46332 -10.39206 -9.78970 -9.70634 -9.48023 -8.54143 -8.23229 -8.03478 -7.66827 -6.36288 -6.33783 -4.36016 0.39043 0.91725 2.10669 2.62230 2.81554 3.11529 3.14310 3.15648 3.21146 3.27006 3.85741 3.99364 4.02344 4.22169 4.25098 4.51945 4.59860 4.63449 4.75854 4.81926 5.05976 5.25474 5.33089 5.50857 5.62266 5.72956 5.78956 5.79185 5.81456 5.89553 5.96094 5.98251 5.99520 6.07475 6.10466 6.31098 6.42215 6.65201 6.69245 6.79474 7.20413 7.26343 7.44484 7.66101 8.18097 8.28029 8.40505 8.51106 8.66957 8.79818 9.16207 10.17622 10.36403 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003127 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.435868 B = 8953.392462 C =10363.931861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.075 4.075 4 C -0.113 4.113 5 C -0.354 4.354 6 C 0.398 3.602 7 N -0.725 5.725 8 C 0.260 3.740 9 H 0.089 0.911 10 C -0.161 4.161 11 C 0.150 3.850 12 N -0.233 5.233 13 N -0.288 5.288 14 C 0.186 3.814 15 C -0.077 4.077 16 C -0.091 4.091 17 C -0.142 4.142 18 C 0.071 3.929 19 N -0.387 5.387 20 N -0.511 5.511 21 C 0.289 3.711 22 C -0.409 4.409 23 H 0.092 0.908 24 C 0.066 3.934 25 N -0.708 5.708 26 Si 0.907 3.093 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.406 0.594 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 14.919 -5.188 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.123 4.123 4 C -0.137 4.137 5 C -0.380 4.380 6 C 0.161 3.839 7 N -0.364 5.364 8 C 0.150 3.850 9 H 0.107 0.893 10 C -0.221 4.221 11 C -0.114 4.114 12 N -0.072 5.072 13 N -0.133 5.133 14 C -0.063 4.063 15 C -0.099 4.099 16 C -0.116 4.116 17 C -0.164 4.164 18 C -0.052 4.052 19 N -0.067 5.067 20 N -0.233 5.233 21 C 0.161 3.839 22 C -0.441 4.441 23 H 0.110 0.890 24 C -0.160 4.160 25 N -0.329 5.329 26 Si 0.732 3.268 27 H -0.183 1.183 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.187 0.813 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.530 14.684 -4.426 16.669 hybrid contribution -1.705 -0.175 -0.675 1.842 sum -8.236 14.509 -5.101 17.446 Atomic orbital electron populations 1.22682 0.82216 1.01514 0.99603 1.85927 1.17812 1.27893 1.90866 1.20039 0.93429 0.83131 1.15658 1.20632 0.97207 0.92317 1.03583 1.20293 0.92619 0.96232 1.28880 1.18372 0.87553 0.86318 0.91706 1.43982 1.08325 1.00113 1.83953 1.18735 0.91257 0.79535 0.95510 0.89343 1.22302 1.02680 1.01376 0.95725 1.25205 0.94361 0.96655 0.95146 1.74226 1.06625 1.08873 1.17511 1.75001 1.21980 1.07796 1.08556 1.22394 0.84659 0.97110 1.02177 1.20276 0.99768 0.95164 0.94674 1.21166 0.91811 0.99508 0.99104 1.20925 1.00965 0.95477 0.99009 1.21748 0.87990 0.99879 0.95569 1.43701 1.10910 1.23059 1.29016 1.68361 1.34706 0.94884 1.25348 1.17769 0.85018 0.90956 0.90177 1.19601 0.90543 0.93158 1.40798 0.88985 1.26104 0.98809 0.97185 0.93874 1.70158 1.10384 1.24455 1.27914 0.86268 0.79828 0.82274 0.78471 1.18286 1.19939 1.19864 0.90197 0.94494 0.94543 0.88274 0.89127 0.75749 0.92741 0.90228 0.91302 0.82668 0.83595 0.82709 0.81261 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.20 9.61 -18.55 -0.18 -7.38 16 3 C -0.07 -1.88 6.74 -38.11 -0.26 -2.14 16 4 C -0.11 -2.52 9.12 -39.22 -0.36 -2.88 16 5 C -0.35 -7.73 8.83 -38.92 -0.34 -8.08 16 6 C 0.40 9.54 7.63 -155.26 -1.18 8.35 16 7 N -0.73 -15.00 5.23 -54.99 -0.29 -15.29 16 8 C 0.26 4.18 2.73 -69.08 -0.19 4.00 16 9 H 0.09 1.30 6.00 -51.93 -0.31 0.99 16 10 C -0.16 -2.32 9.38 37.16 0.35 -1.97 16 11 C 0.15 2.43 6.92 -154.23 -1.07 1.36 16 12 N -0.23 -4.35 11.90 32.94 0.39 -3.96 16 13 N -0.29 -5.08 12.31 31.14 0.38 -4.70 16 14 C 0.19 2.63 7.92 -156.06 -1.24 1.40 16 15 C -0.08 -0.74 10.11 -39.40 -0.40 -1.14 16 16 C -0.09 -0.61 10.07 -39.51 -0.40 -1.01 16 17 C -0.14 -0.94 9.99 -39.87 -0.40 -1.34 16 18 C 0.07 0.66 10.80 -16.69 -0.18 0.48 16 19 N -0.39 -5.23 2.95 -59.73 -0.18 -5.41 16 20 N -0.51 -14.06 7.88 -10.20 -0.08 -14.14 16 21 C 0.29 8.04 6.56 -84.85 -0.56 7.49 16 22 C -0.41 -11.24 8.94 -37.90 -0.34 -11.58 16 23 H 0.09 2.46 7.31 -52.49 -0.38 2.08 16 24 C 0.07 1.71 5.50 -17.33 -0.10 1.62 16 25 N -0.71 -19.08 11.45 55.55 0.64 -18.44 16 26 Si 0.91 19.14 29.56 -169.99 -5.02 14.12 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 29 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 32 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 33 H 0.10 1.90 6.43 -52.49 -0.34 1.56 16 34 H 0.09 1.68 6.03 -52.48 -0.32 1.37 16 35 H 0.41 9.08 8.48 -40.82 -0.35 8.74 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.16 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.17 1.16 7.76 -52.49 -0.41 0.75 16 43 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -34.24 365.18 -9.46 -43.70 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.97 Total: 9.84 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.66 Total: -3.83 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.87 Total: -61.94 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.24 -9.46 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162178193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.258 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds