Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99790 * 2 1 4 4 C 1.39152 * 120.50689 * 359.97438 * 3 2 1 5 5 C 1.38306 * 118.62999 * 180.02562 * 4 3 2 6 6 C 1.39937 * 119.59449 * 0.02562 * 5 4 3 7 7 N 1.38911 * 119.49319 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00318 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.46895 * 325.00406 * 8 7 6 10 10 C 1.53002 * 109.46489 * 85.00257 * 8 7 6 11 11 C 1.50698 * 109.47408 * 205.00012 * 8 7 6 12 12 N 1.30800 * 126.24955 * 314.69784 * 11 8 7 13 13 N 1.28676 * 110.29353 * 179.81399 * 12 11 8 14 14 C 1.32306 * 109.48287 * 0.45295 * 13 12 11 15 15 C 1.40819 * 133.47115 * 179.75664 * 14 13 12 16 16 C 1.36018 * 119.22771 * 179.97438 * 15 14 13 17 17 C 1.40553 * 119.74891 * 0.02562 * 16 15 14 18 18 C 1.34957 * 120.36169 * 359.97438 * 17 16 15 19 19 N 1.36064 * 126.24701 * 134.99681 * 11 8 7 20 20 N 1.31863 * 121.00864 * 359.71479 * 6 5 4 21 21 C 1.33824 * 121.47111 * 0.57294 * 20 6 5 22 22 C 1.40915 * 119.84802 * 179.71180 * 21 20 6 23 23 H 1.08002 * 120.00197 * 179.72939 * 22 21 20 24 24 C 1.40028 * 119.99903 * 359.44406 * 22 21 20 25 25 N 1.30774 * 120.00278 * 0.28207 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 180.27649 * 24 22 21 27 27 H 1.48496 * 109.47191 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47055 * 120.00250 * 26 24 22 29 29 H 1.48498 * 109.47283 * 240.00326 * 26 24 22 30 30 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46981 * 299.99570 * 1 2 3 32 32 H 1.08994 * 109.47365 * 59.99731 * 1 2 3 33 33 H 1.07999 * 120.68356 * 0.04328 * 4 3 2 34 34 H 1.08004 * 120.19988 * 179.97438 * 5 4 3 35 35 H 0.97007 * 119.99733 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.46433 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47620 * 299.99793 * 10 8 7 38 38 H 1.08997 * 109.47430 * 60.00477 * 10 8 7 39 39 H 1.07998 * 120.38583 * 359.97438 * 15 14 13 40 40 H 1.07995 * 120.13075 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.81981 * 180.02562 * 17 16 15 42 42 H 1.08002 * 119.74213 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3642 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0016 8 6 3.2734 6.0811 -0.0016 9 1 2.3652 5.9554 -0.5910 10 6 2.9017 6.4520 1.4355 11 6 4.1142 7.1783 -0.6020 12 7 5.3709 7.4236 -0.3351 13 7 5.7855 8.4284 -1.0238 14 6 4.7958 8.8898 -1.7708 15 6 4.6896 9.9508 -2.6907 16 6 3.5010 10.1734 -3.3134 17 6 2.4002 9.3461 -3.0315 18 6 2.5169 8.3331 -2.1475 19 7 3.7029 8.0980 -1.5165 20 7 4.0577 2.4892 0.0040 21 6 3.4543 1.2947 -0.0010 22 6 4.2291 0.1176 -0.0008 23 1 3.7447 -0.8477 -0.0004 24 6 5.6270 0.1995 -0.0072 25 7 6.2135 1.3683 -0.0077 26 14 6.6539 -1.3608 -0.0148 27 1 5.7566 -2.5440 -0.0134 28 1 7.5052 -1.3872 -1.2314 29 1 7.5164 -1.3917 1.1936 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 0.2176 2.3479 -0.0003 34 1 1.4099 4.5196 -0.0019 35 1 5.0027 4.8490 -0.0015 36 1 2.3362 7.3839 1.4355 37 1 2.2935 5.6585 1.8699 38 1 3.8099 6.5777 2.0249 39 1 5.5419 10.5804 -2.8992 40 1 3.4031 10.9832 -4.0212 41 1 1.4561 9.5216 -3.5256 42 1 1.6647 7.7033 -1.9388 43 1 7.1818 1.4251 -0.0118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162178193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = 102.945876 kcal Electronic energy + Delta-G solvation = -28533.032703 eV Core-core repulsion = 24580.188656 eV Total energy + Delta-G solvation = -3952.844047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.63746 -40.67321 -39.24459 -38.81897 -37.23408 -35.43524 -34.75855 -32.53136 -32.19738 -31.84505 -30.00805 -29.57355 -27.96501 -26.91069 -25.29939 -25.11854 -24.30107 -23.44722 -22.61916 -21.44250 -19.36309 -19.30376 -18.46549 -18.10855 -17.94239 -17.65169 -16.95769 -16.77884 -16.44456 -16.19743 -16.02210 -15.69587 -15.37843 -14.92838 -14.69449 -14.33333 -13.97647 -13.89514 -13.57974 -13.49896 -13.37623 -13.22713 -12.93413 -12.89949 -12.87833 -12.63198 -12.46923 -12.44555 -12.19466 -12.05044 -11.98709 -11.62638 -11.53129 -11.30812 -10.63468 -10.20674 -9.92719 -9.55633 -9.12735 -8.24922 -8.13327 -6.32166 -0.30792 0.04890 0.99004 1.16209 1.29412 1.40559 1.54192 1.56340 1.56673 2.25396 2.36331 2.54057 2.87981 2.93302 3.06148 3.30716 3.48734 3.66039 3.87021 3.94897 4.05263 4.09788 4.19171 4.29288 4.47960 4.53901 4.55935 4.62525 4.67115 4.72984 4.75920 4.79259 4.91606 4.92993 4.96188 5.02576 5.15791 5.21348 5.31888 5.44757 5.50770 5.69897 5.84482 5.87526 6.25274 6.41146 6.67055 6.82337 6.92993 7.33502 7.41313 8.30326 8.49188 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003127 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.435868 B = 8953.392462 C =10363.931861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C -0.096 4.096 4 C -0.109 4.109 5 C -0.336 4.336 6 C 0.378 3.622 7 N -0.728 5.728 8 C 0.264 3.736 9 H 0.109 0.891 10 C -0.152 4.152 11 C 0.131 3.869 12 N -0.277 5.277 13 N -0.347 5.347 14 C 0.183 3.817 15 C -0.110 4.110 16 C -0.057 4.057 17 C -0.120 4.120 18 C 0.039 3.961 19 N -0.386 5.386 20 N -0.547 5.547 21 C 0.253 3.747 22 C -0.450 4.450 23 H 0.085 0.915 24 C 0.023 3.977 25 N -0.751 5.751 26 Si 0.984 3.016 27 H -0.255 1.255 28 H -0.267 1.267 29 H -0.267 1.267 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.392 0.608 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.172 0.828 40 H 0.194 0.806 41 H 0.203 0.797 42 H 0.194 0.806 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 17.028 -7.089 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.362 4.362 6 C 0.140 3.860 7 N -0.364 5.364 8 C 0.155 3.845 9 H 0.126 0.874 10 C -0.211 4.211 11 C -0.133 4.133 12 N -0.116 5.116 13 N -0.192 5.192 14 C -0.066 4.066 15 C -0.131 4.131 16 C -0.081 4.081 17 C -0.140 4.140 18 C -0.083 4.083 19 N -0.065 5.065 20 N -0.270 5.270 21 C 0.125 3.875 22 C -0.482 4.482 23 H 0.103 0.897 24 C -0.198 4.198 25 N -0.373 5.373 26 Si 0.804 3.196 27 H -0.178 1.178 28 H -0.192 1.192 29 H -0.191 1.191 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.226 0.774 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.189 0.811 40 H 0.211 0.789 41 H 0.220 0.780 42 H 0.211 0.789 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.178 16.842 -6.329 20.671 hybrid contribution -0.894 -0.537 -0.249 1.072 sum -11.072 16.305 -6.578 20.778 Atomic orbital electron populations 1.23034 0.79013 1.03976 1.00720 1.85864 1.21144 1.27305 1.90985 1.20075 0.93058 0.84800 1.16419 1.21056 0.99074 0.91341 1.01831 1.20713 0.91849 0.97874 1.25790 1.18777 0.88833 0.86490 0.91907 1.44183 1.07902 1.00881 1.83386 1.18920 0.91156 0.77660 0.96752 0.87366 1.22205 1.02004 1.02669 0.94239 1.24931 0.94027 0.97688 0.96700 1.74055 1.08388 1.10053 1.19119 1.74842 1.24157 1.09127 1.11108 1.23041 0.84149 0.97627 1.01785 1.20701 1.02188 0.94990 0.95202 1.21828 0.90059 0.99140 0.97099 1.21633 1.02635 0.93104 0.96664 1.22554 0.87300 1.01865 0.96556 1.43771 1.12070 1.22154 1.28517 1.68260 1.36572 0.95955 1.26198 1.18178 0.86979 0.91327 0.91061 1.19771 0.91767 0.93106 1.43606 0.89666 1.26956 0.99456 1.00550 0.92834 1.70272 1.10660 1.26666 1.29721 0.85138 0.77854 0.77880 0.78693 1.17826 1.19229 1.19146 0.87318 0.93247 0.93199 0.84417 0.85148 0.77436 0.89503 0.90740 0.93305 0.81080 0.78887 0.77968 0.78870 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.83 113.37 1.11 2.00 16 2 O -0.34 -15.69 9.61 -89.28 -0.86 -16.55 16 3 C -0.10 -4.87 6.74 23.23 0.16 -4.71 16 4 C -0.11 -4.67 9.12 22.51 0.21 -4.46 16 5 C -0.34 -14.18 8.83 22.70 0.20 -13.98 16 6 C 0.38 18.49 7.63 133.45 1.02 19.51 16 7 N -0.73 -31.23 5.23 -327.88 -1.72 -32.95 16 8 C 0.26 8.42 2.73 44.24 0.12 8.54 16 9 H 0.11 2.94 6.00 -2.39 -0.01 2.92 16 10 C -0.15 -4.28 9.38 71.98 0.68 -3.61 16 11 C 0.13 4.36 6.92 137.71 0.95 5.31 16 12 N -0.28 -11.07 11.90 -49.69 -0.59 -11.67 16 13 N -0.35 -13.02 12.31 -55.40 -0.68 -13.70 16 14 C 0.18 5.19 7.92 134.07 1.06 6.25 16 15 C -0.11 -1.85 10.11 22.39 0.23 -1.62 16 16 C -0.06 -0.46 10.07 22.32 0.22 -0.24 16 17 C -0.12 -0.91 9.99 22.08 0.22 -0.69 16 18 C 0.04 0.58 10.80 83.23 0.90 1.48 16 19 N -0.39 -10.07 2.95 -342.89 -1.01 -11.08 16 20 N -0.55 -31.61 7.88 -186.18 -1.47 -33.08 16 21 C 0.25 14.75 6.56 40.23 0.26 15.01 16 22 C -0.45 -26.13 8.94 23.36 0.21 -25.92 16 23 H 0.09 4.83 7.31 -2.91 -0.02 4.81 16 24 C 0.02 1.27 5.50 85.28 0.47 1.74 16 25 N -0.75 -43.01 11.45 21.84 0.25 -42.76 16 26 Si 0.98 41.16 29.56 68.60 2.03 43.19 16 27 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 28 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 29 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 30 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 32 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 33 H 0.14 4.75 6.43 -2.91 -0.02 4.73 16 34 H 0.13 4.36 6.03 -2.91 -0.02 4.35 16 35 H 0.39 18.90 8.48 -92.70 -0.79 18.11 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.07 2.16 7.64 -2.39 -0.02 2.14 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.20 -0.30 8.06 -2.91 -0.02 -0.33 16 42 H 0.19 1.81 7.76 -2.91 -0.02 1.78 16 43 H 0.27 14.43 8.29 -92.71 -0.77 13.66 16 Total: -1.00 -84.80 365.18 4.26 -80.54 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.29 Total: 33.43 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 8.02 Total: 4.63 kcal Atomic # 7 Polarization: -140.02 SS G_CDS: -5.22 Total: -145.23 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.86 Total: -16.55 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -84.80 4.26 -80.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162178193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.488 kcal (2) G-P(sol) polarization free energy of solvation -84.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds