Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99653 * 2 1 4 4 O 1.20820 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99472 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.42107 * 60.86472 * 5 3 2 7 7 C 1.54898 * 110.37569 * 298.54688 * 5 3 2 8 8 C 1.55143 * 101.68811 * 204.11964 * 7 5 3 9 9 O 1.42901 * 110.70968 * 277.07817 * 8 7 5 10 10 C 1.53005 * 110.70555 * 154.01383 * 8 7 5 11 11 F 1.39900 * 109.46800 * 60.00848 * 10 8 7 12 12 F 1.39903 * 109.46988 * 180.02562 * 10 8 7 13 13 F 1.39894 * 109.47286 * 300.00297 * 10 8 7 14 14 C 1.54319 * 103.01536 * 35.63733 * 8 7 5 15 15 N 1.47443 * 107.23380 * 337.71292 * 14 8 7 16 16 C 1.46899 * 110.99783 * 236.74454 * 15 14 8 17 17 H 1.09010 * 109.46735 * 178.93817 * 16 15 14 18 18 C 1.52990 * 109.47262 * 58.93399 * 16 15 14 19 19 C 1.53005 * 109.47421 * 298.93123 * 16 15 14 20 20 C 1.52999 * 109.47074 * 296.97565 * 19 16 15 21 21 C 1.50701 * 109.46918 * 184.98784 * 20 19 16 22 22 H 1.07995 * 120.00124 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99806 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00250 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99572 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47499 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47026 * 119.99783 * 25 23 21 28 28 H 1.48499 * 109.47051 * 239.99432 * 25 23 21 29 29 H 1.09001 * 109.47179 * 299.99672 * 1 2 3 30 30 H 1.08995 * 109.47230 * 59.99912 * 1 2 3 31 31 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09003 * 110.99385 * 86.01095 * 7 5 3 33 33 H 1.08996 * 110.99333 * 322.23102 * 7 5 3 34 34 H 0.96693 * 114.00056 * 174.95893 * 9 8 7 35 35 H 1.08998 * 109.89031 * 97.12717 * 14 8 7 36 36 H 1.08999 * 109.88767 * 218.30823 * 14 8 7 37 37 H 1.09006 * 109.47378 * 66.20754 * 18 16 15 38 38 H 1.09006 * 109.47159 * 186.20032 * 18 16 15 39 39 H 1.08996 * 109.47549 * 306.20129 * 18 16 15 40 40 H 1.08997 * 109.46834 * 56.96961 * 19 16 15 41 41 H 1.08995 * 109.47160 * 176.97571 * 19 16 15 42 42 H 1.09005 * 109.47344 * 304.98457 * 20 19 16 43 43 H 1.08999 * 109.47489 * 64.98601 * 20 19 16 44 44 H 0.96997 * 120.00259 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9724 0.7980 -0.8914 7 6 4.1407 0.6104 1.2765 8 6 5.5147 1.3186 1.4083 9 8 6.4888 0.6914 0.5716 10 6 5.9812 1.3274 2.8655 11 9 6.1053 0.0113 3.3233 12 9 7.2200 1.9714 2.9546 13 9 5.0447 2.0081 3.6508 14 6 5.2148 2.7523 0.9228 15 7 4.0088 2.6839 0.0772 16 6 4.2734 3.2267 -1.2619 17 1 3.3727 3.1468 -1.8707 18 6 5.4052 2.4343 -1.9190 19 6 4.6810 4.6968 -1.1450 20 6 3.5208 5.5026 -0.5574 21 6 3.8763 6.9671 -0.5558 22 1 4.8341 7.2907 -0.9356 23 6 2.9791 7.8938 -0.0686 24 7 1.8129 7.4998 0.3943 25 14 3.4202 9.7090 -0.0661 26 1 4.7800 9.8889 -0.6350 27 1 2.4362 10.4586 -0.8878 28 1 3.3950 10.2225 1.3270 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2666 -0.4630 1.1348 33 1 3.5106 0.8166 2.1416 34 1 7.3442 1.1420 0.5580 35 1 5.0317 3.4028 1.7780 36 1 6.0551 3.1299 0.3402 37 1 5.0740 1.4122 -2.1028 38 1 5.6761 2.9040 -2.8646 39 1 6.2717 2.4222 -1.2579 40 1 5.5498 4.7821 -0.4924 41 1 4.9292 5.0847 -2.1330 42 1 2.6271 5.3464 -1.1616 43 1 3.3307 5.1738 0.4643 44 1 1.1816 8.1517 0.7367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -272.618441 kcal Electronic energy + Delta-G solvation = -32446.167906 eV Core-core repulsion = 27563.287007 eV Total energy + Delta-G solvation = -4882.880900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.31100 -47.82822 -47.76669 -40.90506 -39.53425 -36.94174 -36.10917 -34.31150 -32.66631 -30.50584 -29.90710 -28.79172 -27.56214 -25.72431 -25.14757 -23.70570 -21.69016 -21.37820 -20.33931 -19.39675 -18.99821 -18.53113 -18.36432 -17.39563 -17.09930 -16.49154 -16.12670 -15.98513 -15.65672 -14.76955 -14.62734 -14.55868 -14.31208 -14.22719 -14.18501 -13.98664 -13.90954 -13.85653 -13.70137 -13.27803 -13.11477 -12.82425 -12.65565 -12.49461 -12.19001 -11.90152 -11.88959 -11.78473 -11.47566 -11.27028 -11.06852 -10.82554 -10.78765 -10.68250 -10.41893 -10.27509 -10.16133 -9.64220 -9.23861 -8.86637 -8.23634 -8.12533 -5.84743 -3.87625 2.29081 2.46417 2.58564 3.22468 3.37306 3.41430 3.44678 3.47939 3.54257 3.90209 4.00720 4.32298 4.35928 4.55365 4.72684 4.85050 4.95815 5.13051 5.21166 5.21416 5.24821 5.38304 5.46019 5.49709 5.54068 5.54279 5.59159 5.76917 5.95267 6.12792 6.23815 6.46251 6.53215 6.69538 6.88581 6.96821 7.14994 7.30235 7.88540 7.99215 8.09400 8.25542 8.57792 9.22269 9.75085 11.25567 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004396 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.670527 B = 6367.223085 C = 7738.775981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.456 3.544 4 O -0.456 6.456 5 C 0.084 3.916 6 H 0.106 0.894 7 C -0.098 4.098 8 C 0.070 3.930 9 O -0.521 6.521 10 C 0.435 3.565 11 F -0.177 7.177 12 F -0.181 7.181 13 F -0.169 7.169 14 C 0.026 3.974 15 N -0.479 5.479 16 C 0.074 3.926 17 H 0.085 0.915 18 C -0.186 4.186 19 C -0.102 4.102 20 C 0.032 3.968 21 C -0.522 4.522 22 H 0.051 0.949 23 C 0.058 3.942 24 N -0.889 5.889 25 Si 0.885 3.115 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.285 1.285 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.389 0.611 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.030 0.970 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.778 -20.000 1.142 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.294 3.706 4 O -0.337 6.337 5 C -0.026 4.026 6 H 0.123 0.877 7 C -0.136 4.136 8 C 0.025 3.975 9 O -0.328 6.328 10 C 0.380 3.620 11 F -0.158 7.158 12 F -0.163 7.163 13 F -0.150 7.150 14 C -0.102 4.102 15 N -0.202 5.202 16 C -0.034 4.034 17 H 0.103 0.897 18 C -0.245 4.245 19 C -0.140 4.140 20 C -0.005 4.005 21 C -0.561 4.561 22 H 0.069 0.931 23 C -0.143 4.143 24 N -0.528 5.528 25 Si 0.713 3.287 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.212 1.212 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.239 0.761 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.490 -19.695 1.349 20.491 hybrid contribution 1.126 1.087 0.069 1.566 sum 6.616 -18.609 1.418 19.801 Atomic orbital electron populations 1.23220 0.76457 1.03225 1.02815 1.86460 1.23277 1.33776 1.85006 1.23369 0.91281 0.81619 0.74303 1.90813 1.65960 1.35721 1.41238 1.22016 0.88778 0.91718 1.00097 0.87692 1.22700 0.90701 1.01438 0.98731 1.23709 0.91676 0.97677 0.84415 1.86636 1.25116 1.55119 1.65923 1.21160 0.75618 0.73877 0.91335 1.93199 1.95777 1.36137 1.90723 1.93190 1.44240 1.81899 1.96940 1.93240 1.64978 1.79922 1.76881 1.23634 0.94244 0.92420 0.99896 1.63328 1.29298 1.13702 1.13897 1.22167 0.97539 0.96677 0.86996 0.89694 1.22578 0.99889 1.00158 1.01854 1.21771 1.00878 0.90803 1.00534 1.18972 0.91777 0.92635 0.97127 1.21359 1.01478 0.92553 1.40673 0.93110 1.25004 0.95151 0.98486 0.95691 1.70014 1.07289 1.33568 1.41941 0.86662 0.78311 0.86184 0.77543 1.19913 1.21181 1.21157 0.91821 0.91921 0.88392 0.87244 0.87645 0.76085 0.87773 0.89144 0.92982 0.91702 0.92290 0.93482 0.92679 0.96841 0.95185 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -4.66 10.54 -39.27 -0.41 -5.08 16 3 C 0.46 7.00 7.32 36.01 0.26 7.26 16 4 O -0.46 -9.11 16.24 -18.74 -0.30 -9.41 16 5 C 0.08 1.11 2.71 -67.32 -0.18 0.93 16 6 H 0.11 1.24 5.75 -51.93 -0.30 0.94 16 7 C -0.10 -1.09 5.38 -24.60 -0.13 -1.22 16 8 C 0.07 0.76 0.73 -88.79 -0.07 0.69 16 9 O -0.52 -4.70 12.32 -35.23 -0.43 -5.13 16 10 C 0.44 4.97 2.44 37.16 0.09 5.06 16 11 F -0.18 -2.01 17.08 2.25 0.04 -1.98 16 12 F -0.18 -2.03 16.86 2.25 0.04 -1.99 16 13 F -0.17 -2.23 15.75 2.25 0.04 -2.19 16 14 C 0.03 0.35 4.67 -2.84 -0.01 0.34 16 15 N -0.48 -7.60 3.83 -216.81 -0.83 -8.43 16 16 C 0.07 1.20 2.38 -67.72 -0.16 1.04 16 17 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 18 C -0.19 -2.27 8.60 37.15 0.32 -1.95 16 19 C -0.10 -2.03 4.45 -26.73 -0.12 -2.15 16 20 C 0.03 0.84 4.78 -27.88 -0.13 0.71 16 21 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 22 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 25 Si 0.88 22.16 29.54 -169.99 -5.02 17.13 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.21 7.46 -51.93 -0.39 0.83 16 34 H 0.39 2.32 8.75 45.56 0.40 2.72 16 35 H 0.10 1.60 7.12 -51.93 -0.37 1.23 16 36 H 0.09 1.12 4.72 -51.93 -0.25 0.88 16 37 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.64 5.33 -51.93 -0.28 0.37 16 40 H 0.05 0.89 6.49 -51.93 -0.34 0.55 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.86 7.84 -51.93 -0.41 0.45 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -34.69 366.31 -5.29 -39.97 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.17 Total: 0.23 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.52 Total: -1.59 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.10 Total: -35.48 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.15 Total: -19.62 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.69 -5.29 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.645 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds