Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99653 * 2 1 4 4 O 1.20820 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99472 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.42107 * 60.86472 * 5 3 2 7 7 C 1.54898 * 110.37569 * 298.54688 * 5 3 2 8 8 C 1.55143 * 101.68811 * 204.11964 * 7 5 3 9 9 O 1.42901 * 110.70968 * 277.07817 * 8 7 5 10 10 C 1.53005 * 110.70555 * 154.01383 * 8 7 5 11 11 F 1.39900 * 109.46800 * 60.00848 * 10 8 7 12 12 F 1.39903 * 109.46988 * 180.02562 * 10 8 7 13 13 F 1.39894 * 109.47286 * 300.00297 * 10 8 7 14 14 C 1.54319 * 103.01536 * 35.63733 * 8 7 5 15 15 N 1.47443 * 107.23380 * 337.71292 * 14 8 7 16 16 C 1.46899 * 110.99783 * 236.74454 * 15 14 8 17 17 H 1.09010 * 109.46735 * 178.93817 * 16 15 14 18 18 C 1.52990 * 109.47262 * 58.93399 * 16 15 14 19 19 C 1.53005 * 109.47421 * 298.93123 * 16 15 14 20 20 C 1.52999 * 109.47074 * 296.97565 * 19 16 15 21 21 C 1.50701 * 109.46918 * 184.98784 * 20 19 16 22 22 H 1.07995 * 120.00124 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99806 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00250 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99572 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47499 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47026 * 119.99783 * 25 23 21 28 28 H 1.48499 * 109.47051 * 239.99432 * 25 23 21 29 29 H 1.09001 * 109.47179 * 299.99672 * 1 2 3 30 30 H 1.08995 * 109.47230 * 59.99912 * 1 2 3 31 31 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09003 * 110.99385 * 86.01095 * 7 5 3 33 33 H 1.08996 * 110.99333 * 322.23102 * 7 5 3 34 34 H 0.96693 * 114.00056 * 174.95893 * 9 8 7 35 35 H 1.08998 * 109.89031 * 97.12717 * 14 8 7 36 36 H 1.08999 * 109.88767 * 218.30823 * 14 8 7 37 37 H 1.09006 * 109.47378 * 66.20754 * 18 16 15 38 38 H 1.09006 * 109.47159 * 186.20032 * 18 16 15 39 39 H 1.08996 * 109.47549 * 306.20129 * 18 16 15 40 40 H 1.08997 * 109.46834 * 56.96961 * 19 16 15 41 41 H 1.08995 * 109.47160 * 176.97571 * 19 16 15 42 42 H 1.09005 * 109.47344 * 304.98457 * 20 19 16 43 43 H 1.08999 * 109.47489 * 64.98601 * 20 19 16 44 44 H 0.96997 * 120.00259 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9724 0.7980 -0.8914 7 6 4.1407 0.6104 1.2765 8 6 5.5147 1.3186 1.4083 9 8 6.4888 0.6914 0.5716 10 6 5.9812 1.3274 2.8655 11 9 6.1053 0.0113 3.3233 12 9 7.2200 1.9714 2.9546 13 9 5.0447 2.0081 3.6508 14 6 5.2148 2.7523 0.9228 15 7 4.0088 2.6839 0.0772 16 6 4.2734 3.2267 -1.2619 17 1 3.3727 3.1468 -1.8707 18 6 5.4052 2.4343 -1.9190 19 6 4.6810 4.6968 -1.1450 20 6 3.5208 5.5026 -0.5574 21 6 3.8763 6.9671 -0.5558 22 1 4.8341 7.2907 -0.9356 23 6 2.9791 7.8938 -0.0686 24 7 1.8129 7.4998 0.3943 25 14 3.4202 9.7090 -0.0661 26 1 4.7800 9.8889 -0.6350 27 1 2.4362 10.4586 -0.8878 28 1 3.3950 10.2225 1.3270 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2666 -0.4630 1.1348 33 1 3.5106 0.8166 2.1416 34 1 7.3442 1.1420 0.5580 35 1 5.0317 3.4028 1.7780 36 1 6.0551 3.1299 0.3402 37 1 5.0740 1.4122 -2.1028 38 1 5.6761 2.9040 -2.8646 39 1 6.2717 2.4222 -1.2579 40 1 5.5498 4.7821 -0.4924 41 1 4.9292 5.0847 -2.1330 42 1 2.6271 5.3464 -1.1616 43 1 3.3307 5.1738 0.4643 44 1 1.1816 8.1517 0.7367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = -297.926306 kcal Electronic energy + Delta-G solvation = -32447.265338 eV Core-core repulsion = 27563.287007 eV Total energy + Delta-G solvation = -4883.978331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.23640 -48.75573 -48.69645 -42.02643 -40.64154 -37.94936 -37.34273 -35.77763 -34.50750 -31.83567 -31.28278 -29.99981 -28.48348 -27.04250 -26.67885 -24.87194 -23.25555 -22.53302 -21.63017 -20.56382 -19.99602 -19.45865 -19.32758 -18.56047 -18.33885 -18.14263 -17.58447 -17.11262 -16.61937 -16.52194 -15.72998 -15.55494 -15.51609 -15.20967 -15.14913 -14.95986 -14.93806 -14.84065 -14.78638 -14.58130 -14.32790 -14.09632 -14.04395 -13.82867 -13.46235 -13.25597 -13.00543 -12.93957 -12.85591 -12.73619 -12.46755 -12.33679 -12.25651 -11.88431 -11.77334 -11.69654 -11.41787 -11.39099 -11.22104 -10.92716 -10.49946 -9.29657 -8.12386 -6.24737 1.16155 1.38948 1.39818 1.47816 1.52757 1.54727 2.37986 2.43151 2.49918 2.64212 2.91862 2.96934 3.19508 3.39456 3.41844 3.75155 3.85991 3.93131 4.04393 4.13535 4.33095 4.34345 4.36811 4.41738 4.56190 4.64224 4.64967 4.71640 4.75510 4.86901 4.96021 5.11877 5.30345 5.35900 5.43644 5.59178 5.79100 5.86732 5.99802 6.06374 6.31615 6.32837 6.82669 6.97533 7.44212 8.98925 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004396 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.670527 B = 6367.223085 C = 7738.775981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.459 3.541 4 O -0.516 6.516 5 C 0.087 3.913 6 H 0.130 0.870 7 C -0.095 4.095 8 C 0.091 3.909 9 O -0.513 6.513 10 C 0.437 3.563 11 F -0.174 7.174 12 F -0.179 7.179 13 F -0.184 7.184 14 C 0.025 3.975 15 N -0.515 5.515 16 C 0.082 3.918 17 H 0.057 0.943 18 C -0.173 4.173 19 C -0.091 4.091 20 C 0.044 3.956 21 C -0.540 4.540 22 H 0.061 0.939 23 C -0.004 4.004 24 N -0.934 5.934 25 Si 0.962 3.038 26 H -0.258 1.258 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.405 0.595 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.059 0.941 42 H -0.031 1.031 43 H -0.004 1.004 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -21.398 0.505 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.300 3.700 4 O -0.402 6.402 5 C -0.022 4.022 6 H 0.147 0.853 7 C -0.132 4.132 8 C 0.046 3.954 9 O -0.322 6.322 10 C 0.382 3.618 11 F -0.155 7.155 12 F -0.160 7.160 13 F -0.165 7.165 14 C -0.102 4.102 15 N -0.239 5.239 16 C -0.026 4.026 17 H 0.076 0.924 18 C -0.232 4.232 19 C -0.128 4.128 20 C 0.007 3.993 21 C -0.578 4.578 22 H 0.079 0.921 23 C -0.201 4.201 24 N -0.575 5.575 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.258 0.742 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.078 0.922 42 H -0.012 1.012 43 H 0.014 0.986 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.977 -21.128 0.703 22.595 hybrid contribution 0.296 1.471 0.287 1.528 sum 8.273 -19.657 0.989 21.350 Atomic orbital electron populations 1.23516 0.75103 1.05726 1.02049 1.86461 1.24594 1.32159 1.84166 1.23940 0.92259 0.81389 0.72396 1.90801 1.67356 1.37733 1.44304 1.22118 0.87311 0.90621 1.02195 0.85317 1.22732 0.90487 1.02817 0.97188 1.23294 0.92149 0.95816 0.84152 1.86628 1.25714 1.54823 1.65031 1.21222 0.75427 0.73807 0.91370 1.93206 1.95743 1.35815 1.90721 1.93195 1.44000 1.81895 1.96939 1.93217 1.65624 1.80310 1.77357 1.23541 0.93762 0.94032 0.98887 1.63074 1.31005 1.15864 1.13975 1.21887 0.98071 0.95072 0.87583 0.92421 1.22445 0.98493 1.00250 1.01986 1.21570 0.98408 0.92592 1.00271 1.18741 0.92706 0.93100 0.94746 1.21856 1.01842 0.93876 1.40254 0.92071 1.26017 0.94897 1.04077 0.95135 1.70189 1.08705 1.35490 1.43116 0.85450 0.78728 0.79402 0.77740 1.18134 1.20691 1.20639 0.92744 0.92692 0.84147 0.84418 0.88563 0.74169 0.90514 0.87776 0.91143 0.91006 0.90433 0.92125 0.92244 1.01221 0.98602 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -8.81 10.54 -51.46 -0.54 -9.35 16 3 C 0.46 14.37 7.32 71.24 0.52 14.89 16 4 O -0.52 -22.02 16.24 21.98 0.36 -21.66 16 5 C 0.09 2.23 2.71 44.63 0.12 2.35 16 6 H 0.13 2.68 5.75 -2.39 -0.01 2.67 16 7 C -0.09 -1.93 5.38 31.98 0.17 -1.76 16 8 C 0.09 1.78 0.73 -9.61 -0.01 1.78 16 9 O -0.51 -7.21 12.32 -148.98 -1.84 -9.05 16 10 C 0.44 9.29 2.44 71.98 0.18 9.47 16 11 F -0.17 -3.56 17.08 44.97 0.77 -2.79 16 12 F -0.18 -3.68 16.86 44.97 0.76 -2.92 16 13 F -0.18 -4.84 15.75 44.97 0.71 -4.13 16 14 C 0.03 0.67 4.67 86.65 0.40 1.08 16 15 N -0.51 -16.53 3.83 -839.85 -3.22 -19.75 16 16 C 0.08 2.66 2.38 44.91 0.11 2.77 16 17 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 18 C -0.17 -3.73 8.60 71.98 0.62 -3.11 16 19 C -0.09 -3.64 4.45 30.60 0.14 -3.51 16 20 C 0.04 2.46 4.78 29.85 0.14 2.60 16 21 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 22 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 23 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 24 N -0.93 -60.81 13.29 21.45 0.28 -60.52 16 25 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 29 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.16 7.46 -2.39 -0.02 2.15 16 34 H 0.41 3.08 8.75 -74.06 -0.65 2.44 16 35 H 0.08 2.44 7.12 -2.39 -0.02 2.42 16 36 H 0.10 2.37 4.72 -2.39 -0.01 2.36 16 37 H 0.07 1.29 6.32 -2.38 -0.02 1.28 16 38 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 1.39 5.33 -2.39 -0.01 1.37 16 40 H 0.06 2.25 6.49 -2.39 -0.02 2.23 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H -0.03 -1.94 8.14 -2.38 -0.02 -1.96 16 43 H 0.00 -0.28 7.84 -2.39 -0.02 -0.30 16 44 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -79.89 366.31 3.99 -75.90 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.40 Total: 9.27 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.28 Total: -3.08 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.94 Total: -80.27 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -2.02 Total: -40.06 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 2.23 Total: -9.84 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.89 3.99 -75.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.023 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds