Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 116.99848 * 2 1 4 4 O 1.20823 * 120.00349 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99930 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.90478 * 58.89704 * 5 3 2 7 7 C 1.53992 * 109.91636 * 297.59389 * 5 3 2 8 8 C 1.54597 * 105.13685 * 239.42034 * 7 5 3 9 9 O 1.42902 * 110.72357 * 96.40094 * 8 7 5 10 10 C 1.52995 * 110.72550 * 219.50623 * 8 7 5 11 11 F 1.39901 * 109.47110 * 59.99693 * 10 8 7 12 12 F 1.39899 * 109.47561 * 179.97438 * 10 8 7 13 13 F 1.39901 * 109.47244 * 300.00261 * 10 8 7 14 14 C 1.54941 * 102.92156 * 338.04306 * 8 7 5 15 15 N 1.47896 * 109.91619 * 179.97438 * 5 3 2 16 16 C 1.46901 * 111.00201 * 265.19806 * 15 5 3 17 17 H 1.08998 * 109.46821 * 52.10101 * 16 15 5 18 18 C 1.52999 * 109.46884 * 292.09796 * 16 15 5 19 19 C 1.52994 * 109.47172 * 172.09984 * 16 15 5 20 20 C 1.52998 * 109.47293 * 294.99943 * 19 16 15 21 21 C 1.50708 * 109.47383 * 180.02562 * 20 19 16 22 22 H 1.08002 * 119.99635 * 0.02562 * 21 20 19 23 23 C 1.37870 * 119.99854 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00576 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99764 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46888 * 60.00320 * 25 23 21 27 27 H 1.48501 * 109.47153 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47471 * 300.00219 * 25 23 21 29 29 H 1.09001 * 109.47404 * 59.99578 * 1 2 3 30 30 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47246 * 299.99538 * 1 2 3 32 32 H 1.09001 * 110.31168 * 358.33381 * 7 5 3 33 33 H 1.08996 * 110.31016 * 120.50657 * 7 5 3 34 34 H 0.96699 * 113.99697 * 179.97438 * 9 8 7 35 35 H 1.08996 * 110.66558 * 278.97608 * 14 8 7 36 36 H 1.09002 * 110.66275 * 155.84630 * 14 8 7 37 37 H 1.09003 * 109.46907 * 172.38703 * 18 16 15 38 38 H 1.08990 * 109.47584 * 292.38961 * 18 16 15 39 39 H 1.09000 * 109.47093 * 52.39474 * 18 16 15 40 40 H 1.08999 * 109.47483 * 55.00261 * 19 16 15 41 41 H 1.08996 * 109.47358 * 174.99703 * 19 16 15 42 42 H 1.08999 * 109.47115 * 299.99986 * 20 19 16 43 43 H 1.09003 * 109.47153 * 60.00292 * 20 19 16 44 44 H 0.97003 * 120.00762 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9643 0.7658 -0.8784 7 6 4.1258 0.6324 1.2822 8 6 4.9195 1.7580 1.9844 9 8 4.1193 2.3938 2.9831 10 6 6.2104 1.2098 2.5960 11 9 7.0065 0.6573 1.5869 12 9 6.9072 2.2483 3.2229 13 9 5.8982 0.2225 3.5367 14 6 5.2304 2.7378 0.8251 15 7 3.9966 2.6899 -0.0011 16 6 4.2591 3.1599 -1.3679 17 1 3.3975 2.9418 -1.9988 18 6 5.4926 2.4460 -1.9245 19 6 4.5085 4.6692 -1.3491 20 6 3.2330 5.3915 -0.9108 21 6 3.4784 6.8784 -0.8929 22 1 4.4472 7.2690 -1.1672 23 6 2.4659 7.7398 -0.5274 24 7 1.2861 7.2642 -0.1939 25 14 2.7704 9.5827 -0.5045 26 1 3.1550 10.0377 -1.8648 27 1 1.5323 10.2837 -0.0792 28 1 3.8661 9.8917 0.4490 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3111 0.2895 1.9200 33 1 4.7868 -0.1975 1.0324 34 1 4.5713 3.1075 3.4536 35 1 6.0910 2.3941 0.2513 36 1 5.3987 3.7447 1.2072 37 1 5.6088 2.6913 -2.9802 38 1 6.3777 2.7695 -1.3769 39 1 5.3701 1.3687 -1.8132 40 1 5.3131 4.8959 -0.6496 41 1 4.7904 5.0034 -2.3476 42 1 2.4284 5.1649 -1.6104 43 1 2.9511 5.0574 0.0878 44 1 0.5736 7.8702 0.0630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = -270.926544 kcal Electronic energy + Delta-G solvation = -32445.718567 eV Core-core repulsion = 27562.911033 eV Total energy + Delta-G solvation = -4882.807534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.39031 -47.90982 -47.84436 -40.82055 -39.33598 -36.93985 -36.04199 -34.23144 -32.62863 -30.37545 -29.99030 -28.81331 -27.48079 -25.80792 -25.15508 -23.62385 -21.69817 -21.25267 -20.28177 -19.60601 -18.82121 -18.61370 -18.35956 -17.39164 -17.02124 -16.50923 -16.05488 -15.88834 -15.32782 -14.90850 -14.68663 -14.51105 -14.47060 -14.30381 -14.13956 -14.08416 -13.97324 -13.85447 -13.47723 -13.30099 -12.97045 -12.96656 -12.69837 -12.54974 -12.14931 -11.86327 -11.81447 -11.69881 -11.46710 -11.40157 -11.07363 -10.80705 -10.60800 -10.45762 -10.42190 -10.28617 -10.07096 -9.63947 -9.21015 -8.86661 -8.26760 -8.11312 -5.81684 -3.84772 2.28567 2.49730 2.66079 3.36027 3.36805 3.40418 3.45201 3.46926 3.58022 3.91792 4.05931 4.24238 4.43631 4.57094 4.71286 4.83499 5.00983 5.13587 5.18718 5.21349 5.27864 5.31189 5.40414 5.46840 5.52008 5.52593 5.59425 5.72324 5.92895 6.10644 6.21943 6.51608 6.53511 6.64922 6.94090 7.13548 7.21930 7.32041 7.90116 8.08156 8.12864 8.31944 8.60512 9.25106 9.77463 11.28414 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.004356 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.656170 B = 6426.555914 C = 7751.795604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.371 6.371 3 C 0.454 3.546 4 O -0.449 6.449 5 C 0.076 3.924 6 H 0.098 0.902 7 C -0.103 4.103 8 C 0.090 3.910 9 O -0.507 6.507 10 C 0.431 3.569 11 F -0.177 7.177 12 F -0.179 7.179 13 F -0.175 7.175 14 C 0.013 3.987 15 N -0.461 5.461 16 C 0.072 3.928 17 H 0.084 0.916 18 C -0.191 4.191 19 C -0.097 4.097 20 C 0.031 3.969 21 C -0.523 4.523 22 H 0.049 0.951 23 C 0.058 3.942 24 N -0.888 5.888 25 Si 0.885 3.115 26 H -0.279 1.279 27 H -0.289 1.289 28 H -0.279 1.279 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.390 0.610 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.036 0.964 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.142 -19.266 3.074 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.288 6.288 3 C 0.292 3.708 4 O -0.330 6.330 5 C -0.034 4.034 6 H 0.115 0.885 7 C -0.141 4.141 8 C 0.045 3.955 9 O -0.314 6.314 10 C 0.376 3.624 11 F -0.159 7.159 12 F -0.160 7.160 13 F -0.156 7.156 14 C -0.115 4.115 15 N -0.184 5.184 16 C -0.036 4.036 17 H 0.102 0.898 18 C -0.250 4.250 19 C -0.135 4.135 20 C -0.006 4.006 21 C -0.561 4.561 22 H 0.067 0.933 23 C -0.143 4.143 24 N -0.527 5.527 25 Si 0.713 3.287 26 H -0.205 1.205 27 H -0.214 1.214 28 H -0.204 1.204 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.054 0.946 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.869 -18.964 3.149 20.414 hybrid contribution 1.149 0.961 -0.011 1.498 sum 8.018 -18.003 3.137 19.955 Atomic orbital electron populations 1.23203 0.76481 1.03106 1.02841 1.86434 1.23267 1.33930 1.85209 1.23324 0.91280 0.81647 0.74519 1.90833 1.65827 1.35597 1.40734 1.21866 0.89411 0.92779 0.99323 0.88491 1.22383 1.01315 0.95413 0.94999 1.23201 0.86706 0.95647 0.89934 1.86733 1.40228 1.53015 1.51376 1.21380 0.87468 0.76511 0.77044 1.93180 1.76310 1.86164 1.60223 1.93199 1.81355 1.58122 1.83339 1.93209 1.92860 1.63118 1.66455 1.24032 0.93626 1.00836 0.92993 1.64547 1.27078 1.13925 1.12898 1.22164 0.96488 0.98144 0.86817 0.89808 1.22589 1.00003 0.99880 1.02499 1.21671 1.01767 0.89886 1.00206 1.18984 0.90491 0.93132 0.97980 1.21271 0.97203 0.92340 1.45305 0.93280 1.24992 0.95318 0.98226 0.95730 1.69998 1.02475 1.34409 1.45850 0.86790 0.77334 0.86336 0.78236 1.20477 1.21431 1.20436 0.91926 0.88479 0.91850 0.87580 0.87924 0.75992 0.90571 0.86981 0.91422 0.91954 0.93113 0.93408 0.92927 0.97216 0.94576 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -4.92 10.54 -39.26 -0.41 -5.34 16 3 C 0.45 7.29 7.07 36.01 0.25 7.54 16 4 O -0.45 -9.44 16.21 -18.75 -0.30 -9.74 16 5 C 0.08 1.03 2.73 -67.80 -0.18 0.84 16 6 H 0.10 1.07 5.99 -51.93 -0.31 0.76 16 7 C -0.10 -1.16 5.60 -25.37 -0.14 -1.30 16 8 C 0.09 1.07 0.85 -88.76 -0.08 0.99 16 9 O -0.51 -6.75 13.11 -35.23 -0.46 -7.21 16 10 C 0.43 4.65 2.42 37.15 0.09 4.74 16 11 F -0.18 -1.84 15.80 2.25 0.04 -1.80 16 12 F -0.18 -1.97 16.77 2.25 0.04 -1.93 16 13 F -0.18 -1.96 17.08 2.25 0.04 -1.93 16 14 C 0.01 0.17 4.60 -1.88 -0.01 0.16 16 15 N -0.46 -7.37 3.84 -216.01 -0.83 -8.19 16 16 C 0.07 1.17 2.28 -67.72 -0.15 1.01 16 17 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 18 C -0.19 -2.31 8.19 37.16 0.30 -2.00 16 19 C -0.10 -1.96 4.63 -26.74 -0.12 -2.08 16 20 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 21 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 22 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -27.93 13.29 55.43 0.74 -27.19 16 25 Si 0.88 22.22 29.54 -169.99 -5.02 17.20 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.11 1.24 7.62 -51.93 -0.40 0.85 16 33 H 0.10 0.87 7.40 -51.93 -0.38 0.49 16 34 H 0.39 3.98 8.65 45.56 0.39 4.37 16 35 H 0.08 0.87 4.65 -51.93 -0.24 0.63 16 36 H 0.11 1.59 7.64 -51.93 -0.40 1.19 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 39 H 0.05 0.52 6.25 -51.93 -0.32 0.19 16 40 H 0.05 0.92 7.08 -51.93 -0.37 0.55 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -35.43 368.27 -5.41 -40.84 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.26 Total: 1.47 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.48 Total: -1.73 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.09 Total: -35.39 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.18 Total: -22.29 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.43 -5.41 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.085 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds