Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 110.00133 * 2 1 4 4 C 1.54331 * 109.77806 * 121.16746 * 2 1 3 5 5 H 1.08991 * 110.51754 * 215.80632 * 4 2 1 6 6 N 1.46907 * 110.84974 * 339.02659 * 4 2 1 7 7 C 1.46892 * 111.00032 * 200.14545 * 6 4 2 8 8 C 1.50698 * 109.47477 * 179.97438 * 7 6 4 9 9 N 1.30522 * 126.34716 * 269.69603 * 8 7 6 10 10 N 1.28596 * 109.67200 * 179.81667 * 9 8 7 11 11 C 1.30513 * 109.67535 * 0.45152 * 10 9 8 12 12 N 1.35492 * 126.34741 * 89.99892 * 8 7 6 13 13 C 1.46496 * 126.98080 * 0.02562 * 12 8 7 14 14 C 1.55157 * 103.02182 * 97.49205 * 4 2 1 15 15 C 1.54907 * 101.58251 * 35.30816 * 14 4 2 16 16 N 1.47020 * 109.87976 * 238.90244 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.56799 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.70542 * 17 16 2 19 19 C 1.50703 * 120.00172 * 179.71431 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.08998 * 109.47472 * 179.63623 * 1 2 3 30 30 H 1.09000 * 109.46953 * 299.64806 * 1 2 3 31 31 H 1.09007 * 109.47031 * 59.63998 * 1 2 3 32 32 H 1.00907 * 110.99636 * 76.19192 * 6 4 2 33 33 H 1.09001 * 109.47640 * 300.00251 * 7 6 4 34 34 H 1.09002 * 109.47300 * 59.99802 * 7 6 4 35 35 H 1.07994 * 126.35061 * 179.73137 * 11 10 9 36 36 H 1.08996 * 109.47009 * 89.99855 * 13 12 8 37 37 H 1.09004 * 109.47721 * 210.00018 * 13 12 8 38 38 H 1.09004 * 109.47092 * 330.00178 * 13 12 8 39 39 H 1.09002 * 111.00591 * 277.23522 * 14 4 2 40 40 H 1.09000 * 111.00360 * 153.38342 * 14 4 2 41 41 H 1.08995 * 110.37016 * 204.15408 * 15 14 4 42 42 H 1.09004 * 110.36889 * 81.82092 * 15 14 4 43 43 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 44 44 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 45 45 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9605 -0.2817 1.6196 6 7 1.0229 -0.8103 2.2891 7 6 1.6229 -1.0757 3.6034 8 6 0.5390 -1.1281 4.6491 9 7 0.0916 -0.1224 5.3506 10 7 -0.8353 -0.5269 6.1449 11 6 -1.0147 -1.8108 5.9931 12 7 -0.1477 -2.2289 5.0395 13 6 0.0146 -3.5942 4.5336 14 6 2.3560 -2.1698 0.6914 15 6 2.8612 -1.8467 -0.7369 16 7 2.0300 -0.7141 -1.1839 17 6 1.7754 -0.3844 -2.4657 18 8 1.0747 0.5728 -2.7180 19 6 2.3613 -1.2054 -3.5855 20 16 1.8399 -0.5158 -5.1757 21 6 2.6447 -1.6350 -6.2731 22 1 3.2398 -2.4449 -5.8777 23 6 2.5128 -1.4765 -7.6458 24 7 3.1144 -2.3124 -8.4656 25 14 1.4887 -0.0720 -8.3297 26 1 0.0842 -0.5222 -8.5030 27 1 1.5282 1.0744 -7.3866 28 1 2.0394 0.3484 -9.6432 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 0.3200 -1.4992 2.0667 33 1 2.1489 -2.0300 3.5767 34 1 2.3262 -0.2800 3.8492 35 1 -1.7229 -2.4258 6.5283 36 1 0.7612 -4.1168 5.1315 37 1 -0.9372 -4.1215 4.5988 38 1 0.3406 -3.5601 3.4940 39 1 1.4520 -2.7779 0.6578 40 1 3.1326 -2.6593 1.2791 41 1 2.7176 -2.7049 -1.3933 42 1 3.9123 -1.5589 -0.7115 43 1 2.0108 -2.2343 -3.5036 44 1 3.4491 -1.1857 -3.5197 45 1 3.0226 -2.2014 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = 61.361870 kcal Electronic energy + Delta-G solvation = -26680.734016 eV Core-core repulsion = 22861.530703 eV Total energy + Delta-G solvation = -3819.203313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53488 -40.37004 -38.06213 -35.90504 -35.20726 -32.46041 -32.26882 -31.35511 -30.37466 -28.64130 -28.21048 -26.35618 -25.63558 -25.03306 -23.14710 -22.81917 -21.36411 -20.81146 -19.02610 -17.93342 -17.63034 -17.01760 -16.81654 -16.34175 -16.15341 -15.60666 -15.20637 -15.12207 -14.94015 -14.57130 -14.13928 -13.97993 -13.82679 -13.66347 -13.37180 -13.15791 -13.01449 -12.84603 -12.72089 -12.57566 -12.31318 -11.97762 -11.89509 -11.61516 -11.28702 -11.11353 -11.02169 -10.98710 -10.74995 -10.68269 -10.61967 -9.86911 -9.72970 -9.45235 -9.02054 -8.97891 -8.61432 -8.51228 -6.93833 -6.30971 -4.02706 1.28535 1.94124 2.45671 2.65676 2.94498 3.14161 3.31984 3.49884 3.52115 3.61525 3.82315 3.91989 4.09009 4.16416 4.19373 4.31760 4.35080 4.42194 4.54679 4.63671 4.69737 4.82970 4.90184 4.97175 5.08171 5.13795 5.15881 5.24628 5.35900 5.39226 5.40836 5.45294 5.60396 5.67677 5.75169 5.84531 5.97788 6.01375 6.25920 6.34036 6.38337 6.50491 6.71001 7.56916 7.92003 8.34077 8.38916 8.44691 9.15318 10.78138 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.001998 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.396790 B =14009.117695 C =14328.742948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.079 0.921 4 C 0.084 3.916 5 H 0.101 0.899 6 N -0.665 5.665 7 C 0.148 3.852 8 C 0.177 3.823 9 N -0.273 5.273 10 N -0.297 5.297 11 C 0.150 3.850 12 N -0.478 5.478 13 C 0.071 3.929 14 C -0.165 4.165 15 C 0.103 3.897 16 N -0.623 5.623 17 C 0.548 3.452 18 O -0.512 6.512 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.235 1.235 28 H -0.274 1.274 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.345 0.655 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.218 0.782 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -6.803 29.292 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.097 0.903 4 C -0.027 4.027 5 H 0.119 0.881 6 N -0.297 5.297 7 C 0.017 3.983 8 C -0.091 4.091 9 N -0.114 5.114 10 N -0.136 5.136 11 C -0.137 4.137 12 N -0.169 5.169 13 C -0.072 4.072 14 C -0.205 4.205 15 C -0.021 4.021 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.386 6.386 19 C -0.268 4.268 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.159 1.159 28 H -0.199 1.199 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.600 -3.331 29.264 29.672 hybrid contribution 0.785 -3.313 -0.786 3.494 sum -2.815 -6.644 28.478 29.377 Atomic orbital electron populations 1.21965 0.94189 1.01618 1.03432 1.21365 0.95544 0.95841 0.82933 0.90262 1.22641 0.94321 0.94854 0.90896 0.88090 1.60359 1.14165 1.55100 1.00095 1.20225 0.91039 1.02094 0.84967 1.24694 0.99793 0.83078 1.01533 1.74310 1.07535 1.23843 1.05678 1.74319 1.12483 1.08098 1.18721 1.26484 0.97842 0.94733 0.94653 1.46257 1.29591 1.10224 1.30871 1.22135 1.04750 0.79258 1.01100 1.23532 1.02273 0.97844 0.96823 1.22202 0.95152 0.90019 0.94724 1.48564 1.51780 1.30862 1.04911 1.19940 0.80241 0.84731 0.81432 1.90702 1.37197 1.28188 1.82542 1.23263 1.04031 1.02335 0.97205 1.84818 1.68465 1.42650 0.95548 1.22303 1.36067 1.15657 0.92845 0.89441 1.24715 0.94737 0.96050 0.95823 1.69940 1.41915 1.36277 1.03543 0.86734 0.80971 0.84012 0.80143 1.19219 1.15870 1.19921 0.93632 0.90479 0.91223 0.83519 0.93012 0.87077 0.76512 0.89708 0.88587 0.89340 0.90515 0.89800 0.90119 0.90995 0.88780 0.88626 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.19 37.16 0.30 -1.53 16 2 C 0.15 1.63 3.49 -66.95 -0.23 1.39 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.08 0.57 3.10 -65.87 -0.20 0.36 16 5 H 0.10 0.60 7.90 -51.93 -0.41 0.19 16 6 N -0.67 -4.32 4.88 -106.05 -0.52 -4.83 16 7 C 0.15 0.80 5.71 -4.98 -0.03 0.78 16 8 C 0.18 1.41 7.54 -154.99 -1.17 0.25 16 9 N -0.27 -3.27 12.21 32.80 0.40 -2.87 16 10 N -0.30 -3.39 12.21 29.69 0.36 -3.02 16 11 C 0.15 1.01 12.74 -89.95 -1.15 -0.13 16 12 N -0.48 -2.59 3.15 -122.69 -0.39 -2.98 16 13 C 0.07 0.07 10.90 59.84 0.65 0.72 16 14 C -0.16 -0.91 6.63 -24.58 -0.16 -1.07 16 15 C 0.10 0.90 6.69 -2.53 -0.02 0.89 16 16 N -0.62 -8.02 3.08 -163.01 -0.50 -8.52 16 17 C 0.55 9.80 7.65 -10.98 -0.08 9.72 16 18 O -0.51 -11.08 14.75 5.56 0.08 -11.00 16 19 C -0.12 -2.27 5.16 36.01 0.19 -2.08 16 20 S -0.14 -3.57 18.54 -107.50 -1.99 -5.56 16 21 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 23 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 25 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.23 -5.96 6.73 56.52 0.38 -5.58 16 28 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.04 0.50 7.84 -51.93 -0.41 0.09 16 30 H 0.08 0.87 7.45 -51.93 -0.39 0.49 16 31 H 0.07 1.07 6.74 -51.92 -0.35 0.72 16 32 H 0.35 2.09 7.53 -39.29 -0.30 1.79 16 33 H 0.05 0.15 7.85 -51.93 -0.41 -0.26 16 34 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.22 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.09 0.02 7.81 -51.93 -0.41 -0.38 16 39 H 0.08 0.41 7.81 -51.93 -0.41 0.00 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.68 7.85 -51.91 -0.41 1.28 16 44 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -38.27 382.42 -9.24 -47.51 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.82 Total: -3.31 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.69 Total: -2.62 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.13 Total: -47.81 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.27 -9.24 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.871 kcal (2) G-P(sol) polarization free energy of solvation -38.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds