Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 110.00133 * 2 1 4 4 C 1.54331 * 109.77806 * 121.16746 * 2 1 3 5 5 H 1.08991 * 110.51754 * 215.80632 * 4 2 1 6 6 N 1.46907 * 110.84974 * 339.02659 * 4 2 1 7 7 C 1.46892 * 111.00032 * 200.14545 * 6 4 2 8 8 C 1.50698 * 109.47477 * 179.97438 * 7 6 4 9 9 N 1.30522 * 126.34716 * 269.69603 * 8 7 6 10 10 N 1.28596 * 109.67200 * 179.81667 * 9 8 7 11 11 C 1.30513 * 109.67535 * 0.45152 * 10 9 8 12 12 N 1.35492 * 126.34741 * 89.99892 * 8 7 6 13 13 C 1.46496 * 126.98080 * 0.02562 * 12 8 7 14 14 C 1.55157 * 103.02182 * 97.49205 * 4 2 1 15 15 C 1.54907 * 101.58251 * 35.30816 * 14 4 2 16 16 N 1.47020 * 109.87976 * 238.90244 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.56799 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.70542 * 17 16 2 19 19 C 1.50703 * 120.00172 * 179.71431 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.08998 * 109.47472 * 179.63623 * 1 2 3 30 30 H 1.09000 * 109.46953 * 299.64806 * 1 2 3 31 31 H 1.09007 * 109.47031 * 59.63998 * 1 2 3 32 32 H 1.00907 * 110.99636 * 76.19192 * 6 4 2 33 33 H 1.09001 * 109.47640 * 300.00251 * 7 6 4 34 34 H 1.09002 * 109.47300 * 59.99802 * 7 6 4 35 35 H 1.07994 * 126.35061 * 179.73137 * 11 10 9 36 36 H 1.08996 * 109.47009 * 89.99855 * 13 12 8 37 37 H 1.09004 * 109.47721 * 210.00018 * 13 12 8 38 38 H 1.09004 * 109.47092 * 330.00178 * 13 12 8 39 39 H 1.09002 * 111.00591 * 277.23522 * 14 4 2 40 40 H 1.09000 * 111.00360 * 153.38342 * 14 4 2 41 41 H 1.08995 * 110.37016 * 204.15408 * 15 14 4 42 42 H 1.09004 * 110.36889 * 81.82092 * 15 14 4 43 43 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 44 44 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 45 45 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9605 -0.2817 1.6196 6 7 1.0229 -0.8103 2.2891 7 6 1.6229 -1.0757 3.6034 8 6 0.5390 -1.1281 4.6491 9 7 0.0916 -0.1224 5.3506 10 7 -0.8353 -0.5269 6.1449 11 6 -1.0147 -1.8108 5.9931 12 7 -0.1477 -2.2289 5.0395 13 6 0.0146 -3.5942 4.5336 14 6 2.3560 -2.1698 0.6914 15 6 2.8612 -1.8467 -0.7369 16 7 2.0300 -0.7141 -1.1839 17 6 1.7754 -0.3844 -2.4657 18 8 1.0747 0.5728 -2.7180 19 6 2.3613 -1.2054 -3.5855 20 16 1.8399 -0.5158 -5.1757 21 6 2.6447 -1.6350 -6.2731 22 1 3.2398 -2.4449 -5.8777 23 6 2.5128 -1.4765 -7.6458 24 7 3.1144 -2.3124 -8.4656 25 14 1.4887 -0.0720 -8.3297 26 1 0.0842 -0.5222 -8.5030 27 1 1.5282 1.0744 -7.3866 28 1 2.0394 0.3484 -9.6432 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 0.3200 -1.4992 2.0667 33 1 2.1489 -2.0300 3.5767 34 1 2.3262 -0.2800 3.8492 35 1 -1.7229 -2.4258 6.5283 36 1 0.7612 -4.1168 5.1315 37 1 -0.9372 -4.1215 4.5988 38 1 0.3406 -3.5601 3.4940 39 1 1.4520 -2.7779 0.6578 40 1 3.1326 -2.6593 1.2791 41 1 2.7176 -2.7049 -1.3933 42 1 3.9123 -1.5589 -0.7115 43 1 2.0108 -2.2343 -3.5036 44 1 3.4491 -1.1857 -3.5197 45 1 3.0226 -2.2014 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 34.698769 kcal Electronic energy + Delta-G solvation = -26681.890215 eV Core-core repulsion = 22861.530703 eV Total energy + Delta-G solvation = -3820.359512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.04530 -41.36314 -39.14189 -36.55869 -35.72093 -34.67940 -33.16362 -32.12007 -31.29835 -29.78368 -28.45310 -27.85435 -27.00778 -25.70932 -23.99959 -23.31373 -21.82602 -21.62660 -20.27390 -19.56414 -18.29601 -17.95117 -17.50746 -17.18060 -17.06284 -16.93567 -16.37403 -16.03110 -15.92191 -15.71634 -15.24183 -14.93787 -14.57908 -14.52877 -14.22295 -14.14990 -13.78191 -13.70614 -13.50649 -13.41287 -13.33871 -13.12580 -13.02224 -12.89590 -12.66525 -12.51619 -12.49154 -11.88736 -11.83540 -11.68698 -11.29434 -11.17988 -11.05761 -10.88404 -10.53693 -10.32776 -9.70932 -9.42691 -9.01352 -8.52524 -6.23300 0.83090 0.96442 1.30052 1.44912 1.52320 1.55457 1.63255 1.87845 2.06305 2.24132 2.68133 2.85709 3.04713 3.35512 3.44481 3.59604 3.74232 3.85243 3.90907 4.02738 4.12466 4.17828 4.19430 4.35775 4.38739 4.40400 4.42162 4.51240 4.66257 4.70146 4.72568 4.76597 4.80649 4.93459 5.00156 5.08479 5.10799 5.21329 5.35298 5.48369 5.70021 5.84521 6.01389 6.10285 6.25846 6.40707 6.92925 7.11440 7.78636 8.59597 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.001998 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.396790 B =14009.117695 C =14328.742948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 H 0.060 0.940 4 C 0.101 3.899 5 H 0.117 0.883 6 N -0.678 5.678 7 C 0.154 3.846 8 C 0.177 3.823 9 N -0.332 5.332 10 N -0.356 5.356 11 C 0.161 3.839 12 N -0.471 5.471 13 C 0.061 3.939 14 C -0.148 4.148 15 C 0.088 3.912 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.100 4.100 20 S -0.179 6.179 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.047 3.953 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.263 1.263 27 H -0.239 1.239 28 H -0.259 1.259 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.349 0.651 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.256 0.744 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -8.958 31.285 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.078 0.922 4 C -0.010 4.010 5 H 0.135 0.865 6 N -0.311 5.311 7 C 0.023 3.977 8 C -0.093 4.093 9 N -0.172 5.172 10 N -0.195 5.195 11 C -0.128 4.128 12 N -0.162 5.162 13 C -0.080 4.080 14 C -0.187 4.187 15 C -0.034 4.034 16 N -0.347 5.347 17 C 0.334 3.666 18 O -0.440 6.440 19 C -0.251 4.251 20 S 0.047 5.953 21 C -0.674 4.674 22 H 0.082 0.918 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.734 3.266 26 H -0.187 1.187 27 H -0.163 1.163 28 H -0.183 1.183 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.170 0.830 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.096 -5.538 31.300 31.937 hybrid contribution 0.662 -2.765 -1.238 3.101 sum -2.435 -8.303 30.062 31.282 Atomic orbital electron populations 1.21816 0.94991 1.01671 1.01527 1.21550 0.94920 0.95754 0.84251 0.92160 1.22458 0.94411 0.95241 0.88910 0.86546 1.60188 1.14464 1.55952 1.00450 1.20286 0.90143 1.03850 0.83383 1.25052 0.99837 0.83191 1.01195 1.74176 1.09107 1.26406 1.07548 1.74184 1.13944 1.10804 1.20542 1.27187 0.97617 0.93879 0.94142 1.46480 1.28376 1.11292 1.30021 1.22532 1.06535 0.76921 1.01967 1.23533 1.03755 0.96973 0.94434 1.22632 0.95454 0.88444 0.96897 1.48493 1.50943 1.31657 1.03639 1.19648 0.80059 0.84079 0.82831 1.90686 1.39533 1.30163 1.83586 1.23201 1.04875 1.02888 0.94136 1.84793 1.68643 1.42843 0.98986 1.22427 1.35678 1.15509 0.93765 0.91772 1.25527 0.95829 0.98255 0.96271 1.70010 1.43239 1.37860 1.04159 0.85896 0.79690 0.81112 0.79863 1.18731 1.16307 1.18282 0.92500 0.90065 0.95337 0.83042 0.89250 0.87609 0.72788 0.88020 0.86734 0.88059 0.89649 0.86020 0.89916 0.89433 0.87182 0.87196 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.19 71.98 0.59 -2.75 16 2 C 0.14 2.89 3.49 45.35 0.16 3.05 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.10 1.01 3.10 46.11 0.14 1.15 16 5 H 0.12 0.90 7.90 -2.39 -0.02 0.89 16 6 N -0.68 -6.72 4.88 -489.45 -2.39 -9.11 16 7 C 0.15 1.16 5.71 85.56 0.49 1.65 16 8 C 0.18 2.49 7.54 137.98 1.04 3.53 16 9 N -0.33 -7.96 12.21 -50.16 -0.61 -8.57 16 10 N -0.36 -8.12 12.21 -59.99 -0.73 -8.85 16 11 C 0.16 1.88 12.74 180.11 2.30 4.17 16 12 N -0.47 -3.78 3.15 -542.09 -1.71 -5.49 16 13 C 0.06 -0.15 10.90 127.77 1.39 1.24 16 14 C -0.15 -0.88 6.63 31.99 0.21 -0.66 16 15 C 0.09 1.23 6.69 86.85 0.58 1.81 16 16 N -0.61 -14.78 3.08 -788.04 -2.43 -17.20 16 17 C 0.55 19.36 7.65 87.66 0.67 20.03 16 18 O -0.56 -24.89 14.75 -3.04 -0.04 -24.94 16 19 C -0.10 -3.79 5.16 71.24 0.37 -3.42 16 20 S -0.18 -9.13 18.54 -56.49 -1.05 -10.17 16 21 C -0.53 -30.44 10.04 67.96 0.68 -29.76 16 22 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.91 -55.24 13.97 21.65 0.30 -54.93 16 25 Si 0.91 45.14 27.74 68.60 1.90 47.05 16 26 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.24 -11.92 6.73 99.48 0.67 -11.25 16 28 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 29 H 0.06 1.17 7.84 -2.39 -0.02 1.15 16 30 H 0.08 1.82 7.45 -2.39 -0.02 1.80 16 31 H 0.03 0.90 6.74 -2.38 -0.02 0.88 16 32 H 0.35 2.99 7.53 -89.69 -0.68 2.31 16 33 H 0.09 0.03 7.85 -2.39 -0.02 0.01 16 34 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.26 0.44 8.06 -2.91 -0.02 0.41 16 36 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.10 -0.47 7.81 -2.38 -0.02 -0.49 16 39 H 0.08 0.44 7.81 -2.39 -0.02 0.42 16 40 H 0.12 -0.04 8.14 -2.39 -0.02 -0.05 16 41 H 0.08 1.18 7.48 -2.39 -0.02 1.16 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 3.80 7.85 -2.39 -0.02 3.78 16 44 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 45 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -89.28 382.42 2.63 -86.66 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 0.29 Total: 2.34 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 9.09 Total: 3.23 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -7.56 Total: -104.16 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.17 kcal Total: -89.28 2.63 -86.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.356 kcal (2) G-P(sol) polarization free energy of solvation -89.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds