Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99835 * 2 1 4 4 C 1.54327 * 109.77878 * 121.16737 * 2 1 3 5 5 H 1.09000 * 110.51478 * 215.81021 * 4 2 1 6 6 N 1.46900 * 110.85340 * 339.03020 * 4 2 1 7 7 C 1.46894 * 111.00184 * 200.14891 * 6 4 2 8 8 C 1.50709 * 109.47228 * 179.97438 * 7 6 4 9 9 C 1.35347 * 126.90664 * 94.68621 * 8 7 6 10 10 N 1.33779 * 106.49165 * 179.90922 * 9 8 7 11 11 N 1.28635 * 108.88352 * 0.36504 * 10 9 8 12 12 N 1.28706 * 110.17966 * 359.76773 * 11 10 9 13 13 C 1.46503 * 125.86974 * 180.02562 * 12 11 10 14 14 C 1.55156 * 103.02205 * 97.49766 * 4 2 1 15 15 C 1.54910 * 101.58230 * 35.30766 * 14 4 2 16 16 N 1.47026 * 109.88266 * 238.90853 * 2 1 3 17 17 C 1.34774 * 125.64860 * 59.55827 * 16 2 1 18 18 O 1.21281 * 120.00138 * 359.71638 * 17 16 2 19 19 C 1.50701 * 119.99741 * 179.71935 * 17 16 2 20 20 S 1.81005 * 109.47173 * 179.97438 * 19 17 16 21 21 C 1.76189 * 100.00097 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00127 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00034 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48490 * 109.46901 * 150.00205 * 25 23 21 29 29 H 1.09010 * 109.46959 * 179.63730 * 1 2 3 30 30 H 1.08996 * 109.47747 * 299.64026 * 1 2 3 31 31 H 1.08999 * 109.47521 * 59.64334 * 1 2 3 32 32 H 1.00892 * 111.00268 * 76.18988 * 6 4 2 33 33 H 1.08993 * 109.47162 * 299.99570 * 7 6 4 34 34 H 1.09001 * 109.47289 * 59.99837 * 7 6 4 35 35 H 1.07997 * 126.75606 * 0.03779 * 9 8 7 36 36 H 1.09002 * 109.47057 * 269.98221 * 13 12 11 37 37 H 1.09004 * 109.46993 * 29.97473 * 13 12 11 38 38 H 1.08997 * 109.47584 * 149.97428 * 13 12 11 39 39 H 1.09001 * 111.00606 * 277.22987 * 14 4 2 40 40 H 1.09000 * 111.03758 * 153.39507 * 14 4 2 41 41 H 1.09002 * 110.36663 * 204.15522 * 15 14 4 42 42 H 1.09004 * 110.45957 * 81.87362 * 15 14 4 43 43 H 1.09005 * 109.47318 * 59.99759 * 19 17 16 44 44 H 1.09002 * 109.47150 * 299.99724 * 19 17 16 45 45 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 1 2.9605 -0.2815 1.6196 6 7 1.0230 -0.8104 2.2891 7 6 1.6230 -1.0757 3.6034 8 6 0.5390 -1.1282 4.6491 9 6 -0.0925 -2.2329 5.1104 10 7 -0.9726 -1.8127 6.0261 11 7 -0.8967 -0.5320 6.1196 12 7 -0.0027 -0.0800 5.3115 13 6 0.3655 1.3274 5.1387 14 6 2.3562 -2.1697 0.6913 15 6 2.8613 -1.8465 -0.7370 16 7 2.0300 -0.7140 -1.1840 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2052 -3.5855 20 16 1.8399 -0.5157 -5.1758 21 6 2.6446 -1.6349 -6.2732 22 1 3.2398 -2.4447 -5.8778 23 6 2.5136 -1.4758 -7.6458 24 7 3.1152 -2.3116 -8.4657 25 14 1.4835 -0.0755 -8.3297 26 1 0.0799 -0.5302 -8.4986 27 1 1.5220 1.0727 -7.3887 28 1 2.0297 0.3441 -9.6452 29 1 -0.3633 -1.0277 -0.0065 30 1 -0.3634 0.5082 0.8931 31 1 -0.3634 0.5193 -0.8867 32 1 0.3201 -1.4992 2.0667 33 1 2.1490 -2.0300 3.5767 34 1 2.3262 -0.2800 3.8491 35 1 0.0814 -3.2531 4.8017 36 1 -0.2554 1.7726 4.3614 37 1 0.2116 1.8610 6.0767 38 1 1.4143 1.3958 4.8498 39 1 1.4522 -2.7779 0.6578 40 1 3.1326 -2.6598 1.2788 41 1 2.7178 -2.7048 -1.3934 42 1 3.9126 -1.5593 -0.7134 43 1 2.0109 -2.2342 -3.5036 44 1 3.4491 -1.1855 -3.5197 45 1 3.0233 -2.2006 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178148405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = 76.716763 kcal Electronic energy + Delta-G solvation = -26655.269123 eV Core-core repulsion = 22836.731648 eV Total energy + Delta-G solvation = -3818.537475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.65304 -40.39022 -38.08480 -35.82100 -34.90272 -32.52976 -32.45676 -31.42167 -30.45354 -28.65947 -28.29842 -26.25615 -25.64302 -25.01765 -23.14763 -22.94998 -21.27362 -20.83643 -19.05453 -17.99204 -17.65344 -17.12965 -16.82907 -16.38322 -16.01796 -15.33174 -15.21812 -15.05144 -14.88149 -14.54303 -14.09181 -13.80491 -13.73420 -13.56712 -13.39903 -13.27997 -13.04661 -12.85620 -12.73550 -12.58404 -12.33551 -12.05478 -11.96857 -11.66895 -11.29641 -11.24671 -11.12485 -11.02854 -10.99654 -10.62976 -10.48232 -9.87905 -9.68710 -9.48172 -9.02812 -9.01834 -8.64381 -8.52486 -6.94848 -6.31432 -4.03356 1.11581 1.95877 2.16897 2.62533 2.91748 3.12287 3.31329 3.48450 3.52245 3.61855 3.85728 4.03898 4.14399 4.18307 4.30856 4.39638 4.50494 4.55668 4.59213 4.68055 4.78869 4.85404 4.92060 4.94653 5.03995 5.07637 5.13045 5.26203 5.35639 5.39435 5.40995 5.41501 5.62097 5.73522 5.73919 5.78053 5.95692 5.97174 6.11430 6.27055 6.32140 6.46752 6.71029 7.54059 7.91538 8.11795 8.38676 8.41834 9.14728 10.77702 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001983 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.157669 B =14118.057470 C =14485.458289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.148 3.852 3 H 0.076 0.924 4 C 0.083 3.917 5 H 0.097 0.903 6 N -0.673 5.673 7 C 0.131 3.869 8 C -0.015 4.015 9 C -0.045 4.045 10 N -0.272 5.272 11 N -0.087 5.087 12 N -0.277 5.277 13 C 0.082 3.918 14 C -0.164 4.164 15 C 0.102 3.898 16 N -0.623 5.623 17 C 0.549 3.451 18 O -0.514 6.514 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.235 1.235 28 H -0.274 1.274 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.353 0.647 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.188 0.812 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 2.415 28.555 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.028 4.028 5 H 0.115 0.885 6 N -0.306 5.306 7 C 0.000 4.000 8 C -0.148 4.148 9 C -0.203 4.203 10 N -0.136 5.136 11 N -0.066 5.066 12 N -0.071 5.071 13 C -0.059 4.059 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.388 6.388 19 C -0.269 4.269 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.159 1.159 28 H -0.199 1.199 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.205 0.795 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.639 4.898 29.086 29.540 hybrid contribution 1.617 -1.916 -1.226 2.791 sum -0.022 2.981 27.859 28.018 Atomic orbital electron populations 1.21959 0.94207 1.01891 1.03113 1.21355 0.95489 0.95646 0.83163 0.90575 1.22619 0.94217 0.95015 0.90966 0.88494 1.60489 1.14235 1.55535 1.00292 1.20325 0.91789 1.02132 0.85715 1.22024 1.03298 0.87648 1.01871 1.23424 0.97687 1.00078 0.99155 1.75120 1.19614 1.01774 1.17142 1.78344 1.08863 1.06040 1.13395 1.47192 1.24681 1.09303 1.25907 1.22282 1.03093 0.75404 1.05113 1.23515 1.02554 0.97753 0.96529 1.22222 0.95035 0.89981 0.94952 1.48558 1.51774 1.30896 1.04865 1.19943 0.80189 0.84697 0.81449 1.90695 1.37253 1.28251 1.82578 1.23265 1.04021 1.02399 0.97178 1.84796 1.68521 1.42641 0.95565 1.22300 1.36076 1.15677 0.92836 0.89419 1.24716 0.94734 0.96046 0.95823 1.69939 1.41936 1.36209 1.03548 0.86733 0.81041 0.83963 0.80111 1.19197 1.15922 1.19928 0.93319 0.90841 0.91276 0.82643 0.91624 0.89424 0.79523 0.88486 0.88255 0.88320 0.90203 0.89741 0.90094 0.91082 0.88711 0.88628 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.19 37.16 0.30 -1.37 16 2 C 0.15 1.48 3.49 -66.95 -0.23 1.24 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.08 0.48 3.09 -65.88 -0.20 0.27 16 5 H 0.10 0.46 7.90 -51.93 -0.41 0.05 16 6 N -0.67 -3.33 4.88 -106.05 -0.52 -3.85 16 7 C 0.13 0.48 5.77 -4.97 -0.03 0.45 16 8 C -0.02 -0.10 6.51 -82.09 -0.53 -0.63 16 9 C -0.04 -0.35 11.99 -17.73 -0.21 -0.56 16 10 N -0.27 -3.06 12.41 30.23 0.38 -2.68 16 11 N -0.09 -0.93 13.16 60.35 0.79 -0.13 16 12 N -0.28 -2.03 3.74 -63.78 -0.24 -2.27 16 13 C 0.08 0.28 11.21 59.85 0.67 0.95 16 14 C -0.16 -0.91 6.63 -24.58 -0.16 -1.07 16 15 C 0.10 0.88 6.69 -2.53 -0.02 0.87 16 16 N -0.62 -7.74 3.08 -163.01 -0.50 -8.24 16 17 C 0.55 9.61 7.65 -10.99 -0.08 9.53 16 18 O -0.51 -10.85 14.75 5.56 0.08 -10.76 16 19 C -0.12 -2.25 5.16 36.01 0.19 -2.07 16 20 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 21 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.31 13.97 55.49 0.78 -25.53 16 25 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.05 0.52 7.84 -51.92 -0.41 0.11 16 30 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 31 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 32 H 0.35 1.96 7.53 -39.30 -0.30 1.66 16 33 H 0.07 0.16 8.13 -51.93 -0.42 -0.26 16 34 H 0.09 0.23 7.26 -51.93 -0.38 -0.15 16 35 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.13 7.22 -51.93 -0.38 -0.25 16 39 H 0.08 0.47 7.81 -51.93 -0.41 0.06 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.73 7.48 -51.93 -0.39 0.34 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.70 7.85 -51.91 -0.41 1.29 16 44 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -36.55 381.63 -7.05 -43.61 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.76 Total: -3.00 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.10 Total: -4.26 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.69 Total: -42.71 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.55 -7.05 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.323 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds