Wall clock time and date at job start Sat Apr 11 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99835 * 2 1 4 4 C 1.54327 * 109.77878 * 121.16737 * 2 1 3 5 5 H 1.09000 * 110.51478 * 215.81021 * 4 2 1 6 6 N 1.46900 * 110.85340 * 339.03020 * 4 2 1 7 7 C 1.46894 * 111.00184 * 200.14891 * 6 4 2 8 8 C 1.50709 * 109.47228 * 179.97438 * 7 6 4 9 9 C 1.35347 * 126.90664 * 94.68621 * 8 7 6 10 10 N 1.33779 * 106.49165 * 179.90922 * 9 8 7 11 11 N 1.28635 * 108.88352 * 0.36504 * 10 9 8 12 12 N 1.28706 * 110.17966 * 359.76773 * 11 10 9 13 13 C 1.46503 * 125.86974 * 180.02562 * 12 11 10 14 14 C 1.55156 * 103.02205 * 97.49766 * 4 2 1 15 15 C 1.54910 * 101.58230 * 35.30766 * 14 4 2 16 16 N 1.47026 * 109.88266 * 238.90853 * 2 1 3 17 17 C 1.34774 * 125.64860 * 59.55827 * 16 2 1 18 18 O 1.21281 * 120.00138 * 359.71638 * 17 16 2 19 19 C 1.50701 * 119.99741 * 179.71935 * 17 16 2 20 20 S 1.81005 * 109.47173 * 179.97438 * 19 17 16 21 21 C 1.76189 * 100.00097 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00127 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00034 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48490 * 109.46901 * 150.00205 * 25 23 21 29 29 H 1.09010 * 109.46959 * 179.63730 * 1 2 3 30 30 H 1.08996 * 109.47747 * 299.64026 * 1 2 3 31 31 H 1.08999 * 109.47521 * 59.64334 * 1 2 3 32 32 H 1.00892 * 111.00268 * 76.18988 * 6 4 2 33 33 H 1.08993 * 109.47162 * 299.99570 * 7 6 4 34 34 H 1.09001 * 109.47289 * 59.99837 * 7 6 4 35 35 H 1.07997 * 126.75606 * 0.03779 * 9 8 7 36 36 H 1.09002 * 109.47057 * 269.98221 * 13 12 11 37 37 H 1.09004 * 109.46993 * 29.97473 * 13 12 11 38 38 H 1.08997 * 109.47584 * 149.97428 * 13 12 11 39 39 H 1.09001 * 111.00606 * 277.22987 * 14 4 2 40 40 H 1.09000 * 111.03758 * 153.39507 * 14 4 2 41 41 H 1.09002 * 110.36663 * 204.15522 * 15 14 4 42 42 H 1.09004 * 110.45957 * 81.87362 * 15 14 4 43 43 H 1.09005 * 109.47318 * 59.99759 * 19 17 16 44 44 H 1.09002 * 109.47150 * 299.99724 * 19 17 16 45 45 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 1 2.9605 -0.2815 1.6196 6 7 1.0230 -0.8104 2.2891 7 6 1.6230 -1.0757 3.6034 8 6 0.5390 -1.1282 4.6491 9 6 -0.0925 -2.2329 5.1104 10 7 -0.9726 -1.8127 6.0261 11 7 -0.8967 -0.5320 6.1196 12 7 -0.0027 -0.0800 5.3115 13 6 0.3655 1.3274 5.1387 14 6 2.3562 -2.1697 0.6913 15 6 2.8613 -1.8465 -0.7370 16 7 2.0300 -0.7140 -1.1840 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2052 -3.5855 20 16 1.8399 -0.5157 -5.1758 21 6 2.6446 -1.6349 -6.2732 22 1 3.2398 -2.4447 -5.8778 23 6 2.5136 -1.4758 -7.6458 24 7 3.1152 -2.3116 -8.4657 25 14 1.4835 -0.0755 -8.3297 26 1 0.0799 -0.5302 -8.4986 27 1 1.5220 1.0727 -7.3887 28 1 2.0297 0.3441 -9.6452 29 1 -0.3633 -1.0277 -0.0065 30 1 -0.3634 0.5082 0.8931 31 1 -0.3634 0.5193 -0.8867 32 1 0.3201 -1.4992 2.0667 33 1 2.1490 -2.0300 3.5767 34 1 2.3262 -0.2800 3.8491 35 1 0.0814 -3.2531 4.8017 36 1 -0.2554 1.7726 4.3614 37 1 0.2116 1.8610 6.0767 38 1 1.4143 1.3958 4.8498 39 1 1.4522 -2.7779 0.6578 40 1 3.1326 -2.6598 1.2788 41 1 2.7178 -2.7048 -1.3934 42 1 3.9126 -1.5593 -0.7134 43 1 2.0109 -2.2342 -3.5036 44 1 3.4491 -1.1855 -3.5197 45 1 3.0233 -2.2006 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178148405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:05 Heat of formation + Delta-G solvation = 49.318173 kcal Electronic energy + Delta-G solvation = -26656.457215 eV Core-core repulsion = 22836.731648 eV Total energy + Delta-G solvation = -3819.725567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.19928 -41.33445 -39.10353 -36.48379 -35.41872 -34.68090 -33.32497 -32.16025 -31.37242 -29.75133 -28.74183 -27.85581 -26.85321 -25.59215 -23.96587 -23.50714 -21.73524 -21.60038 -20.25019 -19.55377 -18.37239 -18.01645 -17.63245 -17.22354 -17.09941 -16.84340 -16.21177 -16.02588 -15.72181 -15.56585 -15.09558 -14.93586 -14.55252 -14.49033 -14.11903 -14.07139 -13.75717 -13.75183 -13.60933 -13.43531 -13.32868 -13.10402 -13.01879 -12.82798 -12.67235 -12.58632 -12.47779 -11.88334 -11.82381 -11.74818 -11.63617 -11.18151 -11.01022 -10.87173 -10.54267 -10.22444 -9.68969 -9.38418 -9.01338 -8.52495 -6.23422 0.60614 0.96409 1.30430 1.44747 1.52233 1.55936 1.56798 1.60603 2.06625 2.24076 2.67965 2.85673 3.11018 3.43522 3.48669 3.61564 3.76733 3.87252 4.00837 4.11229 4.16794 4.20054 4.23184 4.33829 4.38728 4.39988 4.45975 4.60073 4.62441 4.69471 4.73282 4.77746 4.84140 4.97926 5.05163 5.10866 5.15130 5.25751 5.38348 5.52446 5.67590 5.69856 5.96040 6.10219 6.29805 6.41252 6.92731 7.12374 7.53279 8.59714 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001983 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.157669 B =14118.057470 C =14485.458289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.140 3.860 3 H 0.067 0.933 4 C 0.102 3.898 5 H 0.122 0.878 6 N -0.678 5.678 7 C 0.137 3.863 8 C -0.004 4.004 9 C -0.057 4.057 10 N -0.315 5.315 11 N -0.128 5.128 12 N -0.274 5.274 13 C 0.072 3.928 14 C -0.151 4.151 15 C 0.088 3.912 16 N -0.613 5.613 17 C 0.547 3.453 18 O -0.560 6.560 19 C -0.102 4.102 20 S -0.177 6.177 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.263 1.263 27 H -0.238 1.238 28 H -0.258 1.258 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.351 0.649 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.211 0.789 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 2.439 30.454 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.008 4.008 5 H 0.140 0.860 6 N -0.310 5.310 7 C 0.007 3.993 8 C -0.138 4.138 9 C -0.217 4.217 10 N -0.179 5.179 11 N -0.108 5.108 12 N -0.068 5.068 13 C -0.067 4.067 14 C -0.190 4.190 15 C -0.035 4.035 16 N -0.348 5.348 17 C 0.335 3.665 18 O -0.439 6.439 19 C -0.253 4.253 20 S 0.050 5.950 21 C -0.675 4.675 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.188 1.188 27 H -0.162 1.162 28 H -0.183 1.183 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.227 0.773 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.242 4.907 31.050 31.437 hybrid contribution 1.255 -1.979 -1.684 2.886 sum 1.013 2.927 29.366 29.529 Atomic orbital electron populations 1.21839 0.95094 1.01506 1.01702 1.21601 0.94794 0.95870 0.84118 0.91537 1.22458 0.94719 0.94554 0.89109 0.85999 1.60379 1.14150 1.55859 1.00652 1.20465 0.90835 1.04239 0.83754 1.22449 1.03001 0.86813 1.01554 1.23954 0.97253 1.01779 0.98671 1.75050 1.21447 1.02419 1.19003 1.78273 1.10870 1.06158 1.15453 1.47529 1.23614 1.10727 1.24932 1.22622 1.04715 0.73675 1.05733 1.23524 1.03514 0.97639 0.94353 1.22619 0.95494 0.88392 0.96946 1.48503 1.50901 1.31640 1.03753 1.19587 0.80055 0.84052 0.82850 1.90679 1.39475 1.30125 1.83595 1.23213 1.04886 1.02857 0.94323 1.84734 1.68683 1.42714 0.98912 1.22434 1.35702 1.15562 0.93815 0.91905 1.25550 0.95843 0.98304 0.96257 1.70012 1.43295 1.37842 1.04165 0.85880 0.79634 0.81065 0.79874 1.18797 1.16155 1.18257 0.93101 0.89334 0.95524 0.82879 0.89237 0.87418 0.77276 0.88217 0.87614 0.85583 0.90277 0.86321 0.90526 0.89310 0.87504 0.87230 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.19 71.98 0.59 -2.38 16 2 C 0.14 2.47 3.49 45.34 0.16 2.63 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 4 C 0.10 0.71 3.09 46.10 0.14 0.85 16 5 H 0.12 0.38 7.90 -2.39 -0.02 0.36 16 6 N -0.68 -3.81 4.88 -489.45 -2.39 -6.19 16 7 C 0.14 0.32 5.77 85.56 0.49 0.81 16 8 C 0.00 -0.04 6.51 41.36 0.27 0.23 16 9 C -0.06 -0.79 11.99 83.73 1.00 0.22 16 10 N -0.32 -7.03 12.41 -58.26 -0.72 -7.75 16 11 N -0.13 -2.72 13.16 37.02 0.49 -2.23 16 12 N -0.27 -3.51 3.74 -355.71 -1.33 -4.84 16 13 C 0.07 0.32 11.21 127.77 1.43 1.75 16 14 C -0.15 -0.92 6.63 31.99 0.21 -0.71 16 15 C 0.09 1.21 6.69 86.85 0.58 1.79 16 16 N -0.61 -14.06 3.08 -788.02 -2.43 -16.48 16 17 C 0.55 18.89 7.65 87.66 0.67 19.56 16 18 O -0.56 -24.05 14.75 -3.03 -0.04 -24.09 16 19 C -0.10 -3.84 5.16 71.24 0.37 -3.48 16 20 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 21 C -0.53 -30.54 10.04 67.96 0.68 -29.86 16 22 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 23 C 0.05 2.69 5.50 84.86 0.47 3.15 16 24 N -0.92 -55.33 13.97 21.65 0.30 -55.03 16 25 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 26 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 27 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 28 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 29 H 0.05 1.01 7.84 -2.38 -0.02 0.99 16 30 H 0.09 1.53 7.45 -2.39 -0.02 1.52 16 31 H 0.03 0.78 6.74 -2.39 -0.02 0.76 16 32 H 0.35 2.55 7.53 -89.70 -0.68 1.87 16 33 H 0.09 -0.11 8.13 -2.39 -0.02 -0.13 16 34 H 0.11 -0.09 7.26 -2.39 -0.02 -0.11 16 35 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.13 -0.16 7.22 -2.39 -0.02 -0.18 16 39 H 0.08 0.57 7.81 -2.39 -0.02 0.55 16 40 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.08 1.16 7.48 -2.39 -0.02 1.15 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.11 3.75 7.85 -2.39 -0.02 3.73 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -84.14 381.63 2.10 -82.04 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.29 Total: 3.18 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 7.07 Total: -5.43 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -6.08 Total: -92.53 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -84.14 2.10 -82.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.362 kcal (2) G-P(sol) polarization free energy of solvation -84.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds