Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.87088 * 2 1 4 4 C 1.54324 * 110.01264 * 121.09966 * 2 1 3 5 5 H 1.09002 * 110.72090 * 215.66100 * 4 2 1 6 6 N 1.46894 * 110.72232 * 338.75784 * 4 2 1 7 7 C 1.46896 * 111.00230 * 205.00179 * 6 4 2 8 8 C 1.53004 * 109.47307 * 180.02562 * 7 6 4 9 9 N 1.46501 * 109.46952 * 179.97438 * 8 7 6 10 10 C 1.34431 * 126.81979 * 124.99965 * 9 8 7 11 11 N 1.30826 * 108.07639 * 179.97438 * 10 9 8 12 12 C 1.33241 * 109.82899 * 359.97438 * 11 10 9 13 13 N 1.30716 * 108.94666 * 359.75135 * 12 11 10 14 14 C 1.55155 * 102.93924 * 97.29850 * 4 2 1 15 15 C 1.54689 * 101.67730 * 35.33807 * 14 4 2 16 16 N 1.47017 * 109.88355 * 238.99031 * 2 1 3 17 17 C 1.34775 * 125.64996 * 59.32438 * 16 2 1 18 18 O 1.21284 * 120.00295 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99957 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47052 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.07991 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99653 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48508 * 109.47016 * 299.99635 * 25 23 21 28 28 H 1.48495 * 109.47483 * 59.99992 * 25 23 21 29 29 H 1.09005 * 109.47086 * 179.56150 * 1 2 3 30 30 H 1.08999 * 109.47416 * 299.55842 * 1 2 3 31 31 H 1.09000 * 109.47643 * 59.55592 * 1 2 3 32 32 H 1.00899 * 110.99900 * 81.04212 * 6 4 2 33 33 H 1.09001 * 109.46739 * 299.99909 * 7 6 4 34 34 H 1.09002 * 109.47385 * 59.99727 * 7 6 4 35 35 H 1.09001 * 109.47033 * 299.99590 * 8 7 6 36 36 H 1.09002 * 109.47234 * 59.99496 * 8 7 6 37 37 H 1.08008 * 125.96148 * 359.97438 * 10 9 8 38 38 H 1.08000 * 125.52693 * 180.02562 * 12 11 10 39 39 H 1.09001 * 111.00292 * 153.57485 * 14 4 2 40 40 H 1.08998 * 111.00228 * 277.38888 * 14 4 2 41 41 H 1.09002 * 110.38906 * 204.36355 * 15 14 4 42 42 H 1.08994 * 110.24141 * 82.11486 * 15 14 4 43 43 H 1.09005 * 109.46512 * 60.00633 * 19 17 16 44 44 H 1.08991 * 109.47135 * 300.00153 * 19 17 16 45 45 H 0.97001 * 119.99662 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 2.9684 -0.2808 1.6162 6 7 1.0327 -0.8014 2.2922 7 6 1.6455 -0.9486 3.6191 8 6 0.5487 -1.0000 4.6846 9 7 1.1599 -1.1475 6.0078 10 6 0.9728 -0.3515 7.0749 11 7 1.6936 -0.8191 8.0615 12 6 2.3511 -1.9079 7.6644 13 7 2.0522 -2.1523 6.4156 14 6 2.3575 -2.1680 0.6901 15 6 2.8554 -1.8496 -0.7394 16 7 2.0300 -0.7123 -1.1849 17 6 1.7717 -0.3834 -2.4662 18 8 1.0719 0.5749 -2.7171 19 6 2.3534 -1.2058 -3.5872 20 16 1.8290 -0.5161 -5.1763 21 6 2.6279 -1.6380 -6.2753 22 1 3.2223 -2.4489 -5.8811 23 6 2.4933 -1.4795 -7.6476 24 7 1.7692 -0.4909 -8.1281 25 14 3.3397 -2.6694 -8.8126 26 1 3.0414 -2.2849 -10.2157 27 1 4.8069 -2.6224 -8.5883 28 1 2.8441 -4.0463 -8.5602 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3634 0.5069 0.8939 31 1 -0.3634 0.5207 -0.8859 32 1 0.3712 -1.5424 2.1151 33 1 2.2259 -1.8707 3.6509 34 1 2.3012 -0.0997 3.8128 35 1 -0.0321 -0.0781 4.6529 36 1 -0.1067 -1.8491 4.4908 37 1 0.3382 0.5217 7.1114 38 1 3.0188 -2.4959 8.2766 39 1 3.1345 -2.6589 1.2760 40 1 1.4522 -2.7743 0.6596 41 1 2.7038 -2.7078 -1.3942 42 1 3.9083 -1.5689 -0.7182 43 1 2.0021 -2.2342 -3.5033 44 1 3.4414 -1.1871 -3.5247 45 1 1.3294 0.1268 -7.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178155989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = 63.118093 kcal Electronic energy + Delta-G solvation = -26109.236854 eV Core-core repulsion = 22290.109696 eV Total energy + Delta-G solvation = -3819.127158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51597 -40.36392 -38.11832 -36.28176 -34.11398 -32.54676 -31.73716 -31.65827 -31.07146 -29.18420 -27.84068 -25.50537 -24.86230 -23.82236 -23.07377 -22.46833 -21.81849 -20.79541 -19.03482 -18.26771 -17.82763 -17.06440 -16.58366 -16.21169 -16.11426 -15.47483 -15.38628 -14.89758 -14.65911 -14.57942 -14.32740 -13.86255 -13.85295 -13.37517 -13.31115 -13.06119 -12.93320 -12.63975 -12.55242 -12.37142 -12.30817 -12.03871 -11.89082 -11.85383 -11.56575 -11.08282 -10.97004 -10.93278 -10.50718 -10.28990 -10.19180 -10.19001 -9.59463 -9.44807 -9.03275 -9.00228 -8.60593 -8.24184 -6.69223 -6.63948 -4.01977 1.13542 1.74156 2.50257 2.73157 2.95550 3.29128 3.36196 3.38597 3.54669 3.57474 3.85299 3.96399 4.12699 4.19563 4.25616 4.28731 4.42695 4.57712 4.62660 4.71298 4.85475 4.94741 4.98016 5.13141 5.19655 5.20645 5.29272 5.34656 5.41236 5.43994 5.48514 5.63118 5.73385 5.75970 5.82216 5.93456 5.98593 6.00371 6.25932 6.30198 6.35227 6.51034 6.74039 7.57742 7.59283 7.89612 8.46048 8.48278 9.25218 10.79941 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.036799 B = 0.001711 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.712207 B =16361.660958 C =16936.595686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.076 0.924 4 C 0.085 3.915 5 H 0.094 0.906 6 N -0.672 5.672 7 C 0.049 3.951 8 C 0.130 3.870 9 N -0.378 5.378 10 C 0.257 3.743 11 N -0.549 5.549 12 C 0.198 3.802 13 N -0.319 5.319 14 C -0.162 4.162 15 C 0.103 3.897 16 N -0.623 5.623 17 C 0.549 3.451 18 O -0.512 6.512 19 C -0.125 4.125 20 S -0.115 6.115 21 C -0.608 4.608 22 H 0.065 0.935 23 C 0.036 3.964 24 N -0.883 5.883 25 Si 1.084 2.916 26 H -0.277 1.277 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.349 0.651 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.220 0.780 38 H 0.217 0.783 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -3.351 30.510 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.026 4.026 5 H 0.112 0.888 6 N -0.303 5.303 7 C -0.081 4.081 8 C 0.008 3.992 9 N -0.169 5.169 10 C -0.040 4.040 11 N -0.276 5.276 12 C -0.105 4.105 13 N -0.147 5.147 14 C -0.201 4.201 15 C -0.021 4.021 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.386 6.386 19 C -0.276 4.276 20 S 0.111 5.889 21 C -0.756 4.756 22 H 0.083 0.917 23 C -0.175 4.175 24 N -0.517 5.517 25 Si 0.910 3.090 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.236 0.764 38 H 0.233 0.767 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.011 -1.990 28.334 28.421 hybrid contribution 0.943 -1.829 1.827 2.752 sum -0.069 -3.819 30.161 30.402 Atomic orbital electron populations 1.21945 0.94063 1.01814 1.03188 1.21373 0.95620 0.95686 0.83089 0.90646 1.22574 0.94128 0.94959 0.90911 0.88800 1.60355 1.16885 1.52734 1.00322 1.22159 0.95777 1.02167 0.88030 1.21768 0.95231 1.04671 0.77549 1.50512 1.34445 1.20247 1.11724 1.26145 0.97982 0.97165 0.82668 1.70566 1.13516 1.13115 1.30393 1.26046 0.99071 0.94307 0.91074 1.78054 1.10449 1.11016 1.15203 1.23447 1.02523 0.97709 0.96463 1.22153 0.95170 0.89900 0.94874 1.48570 1.51964 1.30677 1.04921 1.19943 0.80161 0.84753 0.81407 1.90696 1.37184 1.28151 1.82583 1.23302 1.03752 1.02320 0.98223 1.84814 1.68053 1.42176 0.93844 1.23694 1.39394 1.17417 0.95102 0.91663 1.26051 0.96189 0.99299 0.95947 1.70802 1.27957 1.14060 1.38907 0.83335 0.75552 0.74447 0.75702 1.20238 1.21142 1.21146 0.93401 0.90585 0.91336 0.83173 0.93281 0.90215 0.86876 0.89248 0.76386 0.76700 0.89875 0.90268 0.90214 0.91221 0.89180 0.89140 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.27 37.15 0.31 -1.43 16 2 C 0.15 1.65 3.47 -66.96 -0.23 1.42 16 3 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 4 C 0.09 0.63 3.15 -65.88 -0.21 0.43 16 5 H 0.09 0.68 7.82 -51.93 -0.41 0.27 16 6 N -0.67 -3.71 4.80 -104.79 -0.50 -4.22 16 7 C 0.05 0.24 5.77 -3.82 -0.02 0.22 16 8 C 0.13 0.49 6.81 -4.04 -0.03 0.46 16 9 N -0.38 -2.34 3.69 -62.63 -0.23 -2.57 16 10 C 0.26 1.46 12.63 -90.66 -1.14 0.31 16 11 N -0.55 -4.50 11.19 -15.83 -0.18 -4.68 16 12 C 0.20 1.50 13.03 -91.81 -1.20 0.30 16 13 N -0.32 -2.70 12.58 29.29 0.37 -2.33 16 14 C -0.16 -1.15 6.66 -24.70 -0.16 -1.32 16 15 C 0.10 1.03 6.68 -2.65 -0.02 1.01 16 16 N -0.62 -8.56 3.08 -163.16 -0.50 -9.07 16 17 C 0.55 10.36 7.65 -10.98 -0.08 10.28 16 18 O -0.51 -11.53 14.75 5.55 0.08 -11.45 16 19 C -0.12 -2.55 5.17 36.01 0.19 -2.37 16 20 S -0.12 -3.11 19.60 -107.50 -2.11 -5.22 16 21 C -0.61 -17.53 9.50 30.94 0.29 -17.24 16 22 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 23 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 24 N -0.88 -27.47 13.67 55.49 0.76 -26.71 16 25 Si 1.08 24.87 29.92 -169.99 -5.09 19.78 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.05 0.52 7.97 -51.93 -0.41 0.10 16 30 H 0.08 0.72 7.45 -51.93 -0.39 0.33 16 31 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 32 H 0.35 1.73 7.75 -39.29 -0.30 1.43 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.11 0.20 8.09 -51.93 -0.42 -0.22 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.22 0.29 8.06 -52.48 -0.42 -0.13 16 38 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.55 7.78 -51.93 -0.40 0.15 16 41 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.72 7.84 -51.91 -0.41 1.31 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.28 8.83 7.12 -40.82 -0.29 8.54 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -37.65 385.73 -10.77 -48.42 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.78 Total: -0.79 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.41 Total: -6.97 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.29 Total: -49.58 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.65 -10.77 -48.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178155989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.534 kcal (2) G-P(sol) polarization free energy of solvation -37.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds