Wall clock time and date at job start Sat Apr 11 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49767 * 2 1 4 4 C 1.52759 * 109.56320 * 240.03129 * 2 1 3 5 5 N 1.46924 * 109.01038 * 185.55308 * 4 2 1 6 6 C 1.34782 * 120.63166 * 233.58294 * 5 4 2 7 7 O 1.21699 * 119.99759 * 6.15452 * 6 5 4 8 8 C 1.46667 * 119.99820 * 186.15159 * 6 5 4 9 9 C 1.37893 * 126.22922 * 21.25991 * 8 6 5 10 10 C 1.39890 * 107.09876 * 179.71352 * 9 8 6 11 11 Cl 1.73589 * 126.07450 * 180.26589 * 10 9 8 12 12 C 1.35526 * 107.84934 * 0.26583 * 10 9 8 13 13 N 1.35632 * 108.84961 * 359.97438 * 12 10 9 14 14 C 1.46496 * 125.67103 * 180.02562 * 13 12 10 15 15 C 1.46926 * 118.74088 * 53.30072 * 5 4 2 16 16 C 1.53188 * 108.77698 * 306.65007 * 15 5 4 17 17 C 1.53039 * 109.31326 * 54.63264 * 16 15 5 18 18 H 1.08996 * 109.46309 * 58.65535 * 17 16 15 19 19 C 1.52999 * 109.45923 * 178.61635 * 17 16 15 20 20 N 1.46502 * 109.47076 * 294.99262 * 19 17 16 21 21 C 1.36943 * 120.00192 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99390 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99806 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00466 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99716 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47137 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47029 * 119.99942 * 25 23 21 28 28 H 1.48493 * 109.46988 * 240.00157 * 25 23 21 29 29 H 1.09010 * 109.46931 * 299.93581 * 1 2 3 30 30 H 1.08999 * 109.47495 * 59.93336 * 1 2 3 31 31 H 1.09000 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.51343 * 65.66958 * 4 2 1 33 33 H 1.09003 * 109.43159 * 305.38454 * 4 2 1 34 34 H 1.07999 * 126.44698 * 359.97438 * 9 8 6 35 35 H 1.07991 * 125.56977 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47236 * 95.46126 * 14 13 12 37 37 H 1.09005 * 109.47123 * 215.46189 * 14 13 12 38 38 H 1.09000 * 109.47742 * 335.46365 * 14 13 12 39 39 H 1.09010 * 109.58248 * 66.43590 * 15 5 4 40 40 H 1.08997 * 109.59000 * 186.85640 * 15 5 4 41 41 H 1.09009 * 109.49549 * 174.58071 * 16 15 5 42 42 H 1.08998 * 109.49727 * 294.64409 * 16 15 5 43 43 H 1.08998 * 109.47336 * 54.99915 * 19 17 16 44 44 H 1.09005 * 109.47221 * 174.99958 * 19 17 16 45 45 H 0.97000 * 119.99942 * 0.02562 * 20 19 17 46 46 H 0.96994 * 120.00239 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7190 -1.2470 5 7 3.5045 -0.8295 -1.1694 6 6 4.2811 -0.3862 -2.1779 7 8 3.7816 0.2113 -3.1131 8 6 5.7280 -0.6240 -2.1483 9 6 6.3794 -1.5960 -1.4186 10 6 7.7456 -1.4684 -1.6910 11 17 9.0152 -2.4534 -1.0342 12 6 7.9018 -0.4391 -2.5586 13 7 6.6830 0.0842 -2.8418 14 6 6.4254 1.2118 -3.7408 15 6 4.1053 -1.4266 0.0311 16 6 3.5709 -0.6945 1.2661 17 6 2.0409 -0.7227 1.2485 18 1 1.6968 -1.7568 1.2358 19 6 1.5038 -0.0224 2.4984 20 7 1.8918 -0.7828 3.6889 21 6 1.5210 -0.3446 4.9323 22 1 0.9423 0.5614 5.0350 23 6 1.8891 -1.0648 6.0603 24 7 2.5949 -2.1687 5.9350 25 14 1.3827 -0.4674 7.7562 26 1 0.6002 0.7879 7.6256 27 1 0.5490 -1.5033 8.4174 28 1 2.5958 -0.2123 8.5737 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7646 -0.1502 -2.1346 33 1 1.6020 -1.7153 -1.2970 34 1 5.9207 -2.3221 -0.7638 35 1 8.8429 -0.0924 -2.9591 36 1 6.1698 0.8357 -4.7314 37 1 5.5971 1.8044 -3.3523 38 1 7.3175 1.8345 -3.8077 39 1 3.8375 -2.4818 0.0874 40 1 5.1896 -1.3245 -0.0135 41 1 3.9335 -1.1890 2.1674 42 1 3.9165 0.3392 1.2542 43 1 1.9195 0.9835 2.5582 44 1 0.4168 0.0364 2.4432 45 1 2.4120 -1.5963 3.5966 46 1 2.8524 -2.6718 6.7233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184770347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:59 Heat of formation + Delta-G solvation = 29.328940 kcal Electronic energy + Delta-G solvation = -27639.208902 eV Core-core repulsion = 23784.280080 eV Total energy + Delta-G solvation = -3854.928823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88940 -39.90684 -37.91754 -36.57684 -35.17484 -33.86983 -32.83795 -32.01435 -30.33678 -29.85824 -27.15762 -26.64782 -26.51239 -24.05601 -22.86128 -22.01591 -21.17066 -21.03982 -19.82150 -19.26314 -17.38691 -17.12320 -16.52422 -16.01330 -15.91596 -15.06459 -14.79542 -14.49767 -14.43038 -14.26482 -13.87895 -13.85120 -13.48051 -13.42974 -13.21491 -13.11786 -12.77585 -12.67426 -12.56254 -12.16379 -11.93631 -11.76427 -11.66617 -11.51360 -11.03053 -10.98752 -10.88079 -10.81687 -10.37893 -10.31003 -10.17432 -10.00465 -9.86085 -9.62546 -8.89127 -8.84731 -8.74027 -8.42152 -6.88980 -5.75735 -3.03536 1.16613 1.86183 2.17483 2.46199 3.05204 3.14103 3.43805 3.49701 3.51687 4.28481 4.47223 4.58769 4.59494 4.83575 4.88395 4.92991 4.95933 4.98885 5.15524 5.19003 5.28667 5.34845 5.44240 5.54311 5.59080 5.63343 5.68144 5.78264 5.86393 5.93156 5.98980 6.06034 6.13910 6.23767 6.29832 6.34340 6.42743 6.49761 6.51143 6.64856 6.71101 6.84407 6.94623 7.27502 7.71810 7.97811 8.43715 9.54945 10.13409 10.47989 11.47285 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002972 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.173429 B = 9418.083912 C =11330.700379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.589 3.411 7 O -0.553 6.553 8 C -0.029 4.029 9 C -0.139 4.139 10 C -0.121 4.121 11 Cl -0.047 7.047 12 C 0.029 3.971 13 N -0.405 5.405 14 C 0.075 3.925 15 C 0.074 3.926 16 C -0.124 4.124 17 C -0.090 4.090 18 H 0.073 0.927 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.024 0.976 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.066 3.010 -21.463 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.378 3.622 7 O -0.433 6.433 8 C -0.144 4.144 9 C -0.165 4.165 10 C -0.154 4.154 11 Cl -0.019 7.019 12 C -0.108 4.108 13 N -0.078 5.078 14 C -0.066 4.066 15 C -0.047 4.047 16 C -0.162 4.162 17 C -0.109 4.109 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.186 0.814 35 H 0.195 0.805 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.042 0.958 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.715 3.656 -22.004 23.947 hybrid contribution 0.144 -0.115 1.157 1.172 sum 8.859 3.541 -20.846 22.926 Atomic orbital electron populations 1.21830 0.94284 1.02238 1.02078 1.21377 0.96158 0.99968 0.94170 0.90943 1.21666 0.77918 1.01141 0.99429 1.47788 1.06959 1.59939 1.17494 1.16876 0.84177 0.78738 0.82435 1.90789 1.75055 1.42349 1.35107 1.20033 0.90290 1.00250 1.03777 1.21691 0.91614 1.01142 1.02078 1.19962 0.90166 0.99870 1.05394 1.98337 1.49751 1.68798 1.84997 1.21708 0.89154 0.97639 1.02254 1.43762 1.05115 1.25177 1.33725 1.22216 1.03744 0.86964 0.93685 1.22790 1.00448 0.97537 0.83966 1.21931 0.95905 1.01146 0.97267 1.21354 0.94852 1.00185 0.94471 0.90899 1.20750 0.96631 0.94034 0.85665 1.42383 1.65446 1.28932 1.00841 1.19267 1.27563 1.06143 0.83851 0.91277 1.24714 1.00977 0.97553 0.97764 1.69656 1.42850 1.17303 1.28409 0.86144 0.77654 0.77744 0.84827 1.20624 1.21915 1.21898 0.91257 0.93010 0.92447 0.89120 0.91184 0.81370 0.80501 0.89907 0.88754 0.89451 0.90746 0.87155 0.89103 0.91853 0.96647 0.95834 0.78293 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.82 37.16 0.33 -1.41 16 2 C -0.10 -1.25 2.40 -90.72 -0.22 -1.47 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.46 5.70 -3.93 -0.02 1.44 16 5 N -0.59 -7.45 2.98 -174.58 -0.52 -7.97 16 6 C 0.59 7.95 7.53 -12.86 -0.10 7.85 16 7 O -0.55 -8.52 14.82 5.19 0.08 -8.44 16 8 C -0.03 -0.35 6.54 -81.98 -0.54 -0.89 16 9 C -0.14 -1.56 8.54 -39.09 -0.33 -1.89 16 10 C -0.12 -1.27 6.66 -39.93 -0.27 -1.54 16 11 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 12 C 0.03 0.26 11.35 -16.84 -0.19 0.07 16 13 N -0.40 -4.06 3.16 -120.19 -0.38 -4.44 16 14 C 0.07 0.55 10.28 59.84 0.61 1.17 16 15 C 0.07 0.89 5.15 -3.71 -0.02 0.87 16 16 C -0.12 -1.82 5.25 -26.61 -0.14 -1.96 16 17 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 20 N -0.73 -18.02 5.32 -59.91 -0.32 -18.33 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 25 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.07 0.89 6.29 -51.92 -0.33 0.57 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.17 1.72 5.68 -52.49 -0.30 1.42 16 35 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.83 7.27 -51.93 -0.38 0.45 16 38 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.11 1.25 3.66 -51.93 -0.19 1.06 16 41 H 0.09 1.52 7.15 -51.92 -0.37 1.15 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 45 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.37 376.00 -9.32 -41.69 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.72 Total: 7.11 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.31 Total: -3.48 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.49 Total: -57.85 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.37 -9.32 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184770347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.015 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds