Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31245 * 126.68593 * 2 1 4 4 N 1.40110 * 107.17615 * 179.97438 * 3 2 1 5 5 C 1.40138 * 125.56501 * 179.97438 * 4 3 2 6 6 C 1.38858 * 120.06443 * 179.75265 * 5 4 3 7 7 C 1.38116 * 119.92761 * 179.72242 * 6 5 4 8 8 C 1.38277 * 120.07195 * 0.55685 * 7 6 5 9 9 C 1.38290 * 120.13326 * 359.71516 * 8 7 6 10 10 C 1.38114 * 120.06823 * 0.02562 * 9 8 7 11 11 N 1.28709 * 108.86278 * 359.76878 * 4 3 2 12 12 C 1.32052 * 109.42406 * 0.38053 * 11 4 3 13 13 C 1.47763 * 126.04708 * 179.88838 * 12 11 4 14 14 O 1.21566 * 120.00018 * 185.10330 * 13 12 11 15 15 N 1.34767 * 120.00006 * 5.09574 * 13 12 11 16 16 C 1.46505 * 120.00293 * 185.24964 * 15 13 12 17 17 C 1.50696 * 109.46931 * 269.99951 * 16 15 13 18 18 H 1.08003 * 120.00227 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99805 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99621 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99961 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47345 * 89.99932 * 21 19 17 23 23 H 1.48497 * 109.47277 * 209.99681 * 21 19 17 24 24 H 1.48505 * 109.47518 * 329.99683 * 21 19 17 25 25 C 1.46507 * 120.00233 * 5.24733 * 15 13 12 26 26 C 1.52995 * 109.46994 * 271.95729 * 25 15 13 27 27 C 1.47207 * 109.46833 * 179.97438 * 26 25 15 28 28 N 6.43305 * 157.28510 * 193.46430 * 2 1 3 29 29 H 1.09001 * 109.47052 * 270.02235 * 1 2 3 30 30 H 1.08994 * 109.47157 * 30.02371 * 1 2 3 31 31 H 1.09004 * 109.47249 * 150.02725 * 1 2 3 32 32 H 1.08008 * 120.03708 * 359.97438 * 6 5 4 33 33 H 1.08008 * 119.96475 * 180.29781 * 7 6 5 34 34 H 1.07993 * 119.93463 * 179.74647 * 8 7 6 35 35 H 1.07998 * 119.96200 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.02799 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.46823 * 30.00009 * 16 15 13 38 38 H 1.08996 * 109.47021 * 150.00222 * 16 15 13 39 39 H 0.97001 * 119.99324 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.46712 * 31.95768 * 25 15 13 41 41 H 1.08998 * 109.47070 * 151.95303 * 25 15 13 42 42 H 1.08994 * 109.47393 * 299.99804 * 26 25 15 43 43 H 1.09003 * 109.47249 * 60.00189 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2911 1.0525 0.0000 4 7 3.6118 0.5846 0.0006 5 6 4.7608 1.3869 0.0003 6 6 6.0191 0.7998 0.0061 7 6 7.1497 1.5932 0.0000 8 6 7.0294 2.9707 -0.0003 9 6 5.7776 3.5583 -0.0004 10 6 4.6433 2.7704 0.0003 11 7 3.5973 -0.7024 0.0059 12 6 2.3470 -1.1275 0.0005 13 6 1.9084 -2.5385 0.0016 14 8 0.7271 -2.8079 -0.0974 15 7 2.8179 -3.5269 0.1121 16 6 2.3974 -4.9256 -0.0022 17 6 2.0309 -5.4529 1.3611 18 1 2.1036 -4.8103 2.2262 19 6 1.6019 -6.7555 1.5040 20 7 1.2826 -7.2158 2.6939 21 14 1.4756 -7.8666 0.0079 22 1 2.7651 -8.5753 -0.1927 23 1 0.3924 -8.8602 0.2192 24 1 1.1689 -7.0478 -1.1925 25 6 4.2273 -3.2026 0.3465 26 6 4.9323 -2.9933 -0.9951 27 6 6.3483 -2.6669 -0.7595 28 7 7.4411 -2.4158 -0.5784 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8903 -0.5134 32 1 6.1138 -0.2761 0.0114 33 1 8.1288 1.1372 -0.0003 34 1 7.9149 3.5890 -0.0010 35 1 5.6869 4.6345 -0.0011 36 1 3.6660 3.2299 -0.0002 37 1 1.5324 -4.9921 -0.6621 38 1 3.2146 -5.5182 -0.4133 39 1 0.9804 -8.1320 2.7943 40 1 4.2965 -2.2906 0.9395 41 1 4.7042 -4.0223 0.8837 42 1 4.8631 -3.9052 -1.5881 43 1 4.4554 -2.1734 -1.5323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192540049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = 148.028853 kcal Electronic energy + Delta-G solvation = -29053.138185 eV Core-core repulsion = 25102.249083 eV Total energy + Delta-G solvation = -3950.889102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.79084 -39.58244 -39.02082 -36.93716 -35.51750 -34.42852 -33.06570 -32.46440 -31.35433 -31.04755 -30.36428 -28.49056 -27.65461 -25.04859 -23.97452 -23.14237 -22.65527 -21.56124 -20.72780 -19.18036 -18.34286 -17.76313 -16.87826 -16.60528 -16.54483 -16.47056 -15.70652 -15.21058 -14.88653 -14.60586 -14.53466 -13.95095 -13.87784 -13.78294 -13.66598 -13.54630 -13.18142 -12.93037 -12.83668 -12.64126 -12.49029 -12.27663 -12.00503 -11.88070 -11.68037 -11.63716 -11.51469 -11.07502 -11.05740 -10.75896 -10.58745 -10.41778 -10.20604 -10.11790 -9.64895 -9.42867 -9.39570 -8.63944 -8.46845 -7.97212 -6.12688 -4.12723 0.33469 0.95625 1.63567 1.77861 1.85903 2.72614 2.80143 3.23862 3.30673 3.34382 3.38498 3.41244 3.58217 3.65875 4.13298 4.35196 4.51185 4.52963 4.63598 4.73189 4.85350 4.96755 5.07382 5.11614 5.18364 5.20702 5.28873 5.33955 5.53078 5.60261 5.63969 5.68365 5.82144 5.84159 5.93879 5.99841 6.09409 6.11981 6.31026 6.34309 6.51407 6.74483 6.82782 7.10929 7.51855 7.55838 7.69752 7.96437 8.37905 8.65437 8.91682 9.45931 11.00515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003566 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.598463 B = 7849.387624 C = 9301.648360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.107 3.893 3 N -0.284 5.284 4 N -0.171 5.171 5 C 0.163 3.837 6 C -0.115 4.115 7 C -0.095 4.095 8 C -0.121 4.121 9 C -0.100 4.100 10 C -0.111 4.111 11 N -0.206 5.206 12 C -0.039 4.039 13 C 0.596 3.404 14 O -0.512 6.512 15 N -0.574 5.574 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.262 1.262 25 C 0.117 3.883 26 C -0.046 4.046 27 C 0.221 3.779 28 N -0.443 5.443 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 19.230 -8.216 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 N -0.114 5.114 4 N -0.062 5.062 5 C 0.072 3.928 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.132 4.132 11 N -0.049 5.049 12 C -0.207 4.207 13 C 0.380 3.620 14 O -0.385 6.385 15 N -0.304 5.304 16 C 0.096 3.904 17 C -0.570 4.570 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.532 5.532 21 Si 0.699 3.301 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.009 4.009 26 C -0.087 4.087 27 C -0.097 4.097 28 N -0.121 5.121 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.510 20.041 -7.899 23.548 hybrid contribution -1.049 -1.342 -0.598 1.805 sum 8.461 18.699 -8.497 22.214 Atomic orbital electron populations 1.20441 0.83617 1.04918 1.04490 1.23591 0.98834 0.88397 0.95594 1.77948 0.87269 1.22681 1.23467 1.48194 1.04571 1.01084 1.52307 1.17369 0.81893 0.89341 1.04244 1.21030 0.89938 1.01550 1.01112 1.21079 0.98260 0.93558 0.98507 1.21317 0.97868 0.94919 0.99829 1.21053 0.91515 1.00123 0.99201 1.20922 1.00671 0.90515 1.01086 1.73994 1.22664 0.95218 1.13054 1.23284 0.87767 0.97673 1.11931 1.16665 0.85809 0.81346 0.78202 1.90782 1.15644 1.82099 1.50013 1.47732 1.06062 1.07835 1.68804 1.19830 0.96126 0.75444 0.98965 1.21277 1.45394 0.97575 0.92763 0.90524 1.24844 0.94494 0.97742 0.95767 1.69891 1.44625 1.16496 1.22227 0.86903 0.78275 0.81063 0.83840 1.20068 1.20946 1.18652 1.21525 0.81803 1.03376 0.94198 1.19809 0.82909 1.04445 1.01557 1.29015 0.94789 0.92733 0.93153 1.81177 1.12468 1.09740 1.08692 0.89292 0.90492 0.87473 0.84580 0.84743 0.85187 0.84743 0.84125 0.93546 0.94985 0.92478 0.89091 0.88587 0.86996 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.98 36.01 0.36 -0.56 16 2 C 0.11 1.58 7.34 -81.95 -0.60 0.98 16 3 N -0.28 -4.12 11.90 33.88 0.40 -3.72 16 4 N -0.17 -2.46 4.44 32.48 0.14 -2.32 16 5 C 0.16 2.03 6.74 -83.60 -0.56 1.47 16 6 C -0.12 -1.35 9.61 -39.40 -0.38 -1.73 16 7 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 8 C -0.12 -0.93 10.04 -39.55 -0.40 -1.32 16 9 C -0.10 -0.79 10.04 -39.61 -0.40 -1.18 16 10 C -0.11 -1.13 9.65 -39.40 -0.38 -1.52 16 11 N -0.21 -3.07 6.24 33.29 0.21 -2.86 16 12 C -0.04 -0.64 6.66 -82.99 -0.55 -1.19 16 13 C 0.60 11.27 7.66 -12.37 -0.09 11.17 16 14 O -0.51 -11.01 14.54 5.31 0.08 -10.93 16 15 N -0.57 -10.69 2.46 -176.20 -0.43 -11.12 16 16 C 0.22 4.71 4.18 -5.19 -0.02 4.69 16 17 C -0.53 -14.25 9.94 -34.44 -0.34 -14.59 16 18 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 21 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 25 C 0.12 1.76 4.90 -4.04 -0.02 1.74 16 26 C -0.05 -0.55 5.50 -29.52 -0.16 -0.71 16 27 C 0.22 2.82 13.94 -20.76 -0.29 2.53 16 28 N -0.44 -6.36 18.26 42.15 0.77 -5.59 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.42 6.49 -51.93 -0.34 1.09 16 32 H 0.14 1.72 5.77 -52.48 -0.30 1.42 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.37 7.67 -52.49 -0.40 0.97 16 37 H 0.05 1.07 6.56 -51.93 -0.34 0.73 16 38 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.38 5.62 -51.93 -0.29 1.09 16 41 H 0.10 1.46 8.06 -51.93 -0.42 1.04 16 42 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.11 1.24 6.71 -51.93 -0.35 0.89 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -32.53 371.04 -6.43 -38.96 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.96 Total: 1.82 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -4.34 Total: 0.44 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 1.86 Total: -51.39 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.53 -6.43 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192540049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.990 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds