Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47589 * 2 1 4 4 N 1.46501 * 109.46896 * 120.00695 * 2 1 3 5 5 C 1.34770 * 120.00424 * 154.99889 * 4 2 1 6 6 O 1.21580 * 120.00091 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00551 * 179.97438 * 5 4 2 8 8 C 1.38446 * 120.00265 * 186.26857 * 7 5 4 9 9 C 1.38652 * 126.09779 * 29.16158 * 8 7 5 10 10 C 1.43198 * 126.81607 * 0.02562 * 9 8 7 11 11 N 4.21188 * 127.87428 * 357.92403 * 3 1 2 12 12 C 1.47403 * 106.36551 * 180.02562 * 9 8 7 13 13 C 1.40846 * 126.47375 * 180.02562 * 12 9 8 14 14 H 1.08001 * 119.99938 * 5.08724 * 13 12 9 15 15 C 1.40004 * 120.00332 * 185.07868 * 13 12 9 16 16 N 1.30818 * 119.99742 * 354.90576 * 15 13 12 17 17 Si 1.86796 * 120.00446 * 174.91036 * 15 13 12 18 18 H 1.48499 * 109.47190 * 94.99603 * 17 15 13 19 19 H 1.48499 * 109.47383 * 215.00179 * 17 15 13 20 20 H 1.48505 * 109.46885 * 334.99607 * 17 15 13 21 21 N 1.32784 * 107.05275 * 359.74576 * 12 9 8 22 22 N 1.36129 * 126.09856 * 209.19347 * 8 7 5 23 23 C 1.39782 * 125.18224 * 359.94819 * 22 8 7 24 24 C 1.38977 * 120.07756 * 137.42066 * 23 22 8 25 25 C 1.38078 * 119.91911 * 179.97438 * 24 23 22 26 26 C 1.38308 * 120.08238 * 359.97438 * 25 24 23 27 27 C 1.38318 * 120.15544 * 0.02562 * 26 25 24 28 28 C 1.38070 * 120.08111 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.46732 * 300.00096 * 1 2 3 30 30 H 1.09003 * 109.46559 * 59.99775 * 1 2 3 31 31 H 1.08994 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46953 * 239.99855 * 2 1 3 33 33 H 1.09003 * 109.47092 * 59.99939 * 3 2 1 34 34 H 1.09003 * 109.47610 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47456 * 300.00285 * 3 2 1 36 36 H 0.97009 * 119.99789 * 334.98814 * 4 2 1 37 37 H 0.97006 * 119.99264 * 6.27024 * 7 5 4 38 38 H 0.96995 * 120.00047 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.03654 * 0.02562 * 24 23 22 40 40 H 1.08004 * 119.95753 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.92236 * 179.74560 * 26 25 24 42 42 H 1.08004 * 119.95994 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.04470 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 3.2402 -1.2594 1.1944 6 8 3.9371 -1.1995 0.2000 7 7 3.6896 -1.8944 2.2950 8 6 4.9909 -2.3650 2.3398 9 6 6.0782 -1.8254 1.6698 10 6 6.0733 -0.6835 0.8057 11 7 6.0696 0.2222 0.1204 12 6 7.2403 -2.6604 2.0237 13 6 8.5639 -2.4866 1.5748 14 1 8.8209 -1.6294 0.9701 15 6 9.5467 -3.4248 1.9127 16 7 9.2598 -4.4082 2.7263 17 14 11.2674 -3.2723 1.2020 18 1 12.1363 -2.5438 2.1609 19 1 11.8247 -4.6272 0.9596 20 1 11.2090 -2.5246 -0.0798 21 7 6.8046 -3.6037 2.8504 22 7 5.4309 -3.4404 3.0491 23 6 4.6317 -4.2535 3.8578 24 6 4.7873 -5.6342 3.8272 25 6 3.9964 -6.4343 4.6278 26 6 3.0506 -5.8633 5.4599 27 6 2.8930 -4.4895 5.4928 28 6 3.6795 -3.6833 4.6943 29 1 -0.3632 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.4621 -0.7388 1.9895 37 1 3.1012 -2.0218 3.0556 38 1 9.9405 -5.0584 2.9601 39 1 5.5265 -6.0807 3.1787 40 1 4.1171 -7.5073 4.6049 41 1 2.4306 -6.4918 6.0819 42 1 2.1537 -4.0469 6.1440 43 1 3.5562 -2.6106 4.7208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202518320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = 108.946346 kcal Electronic energy + Delta-G solvation = -29018.018848 eV Core-core repulsion = 25065.435001 eV Total energy + Delta-G solvation = -3952.583847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78713 -39.52195 -38.25726 -36.23412 -35.04742 -34.48370 -33.65822 -32.13760 -31.39109 -30.76989 -28.76674 -27.86518 -27.33152 -25.99072 -23.49467 -22.42257 -22.04046 -20.82967 -20.48167 -20.19128 -18.59325 -18.10613 -16.81488 -16.35471 -15.95445 -15.59509 -15.52508 -15.00220 -14.74587 -14.60721 -14.30258 -14.01601 -13.69559 -13.48655 -13.24603 -13.00886 -12.84453 -12.54349 -12.47550 -12.30719 -11.78827 -11.69866 -11.62884 -11.47874 -11.38442 -11.28064 -11.06120 -11.01680 -10.93784 -10.72697 -10.32597 -10.07810 -9.84491 -9.54206 -9.11136 -8.93400 -8.82596 -8.62646 -7.59102 -7.09668 -6.62159 -4.58407 1.29907 1.51925 2.31294 2.55988 3.04398 3.15925 3.22129 3.36336 3.52697 3.83214 3.98819 4.02042 4.12858 4.23336 4.71644 4.79525 4.92378 4.98622 5.03928 5.10563 5.23511 5.43422 5.43929 5.51278 5.55211 5.60465 5.66350 5.68396 5.76579 5.79928 5.91355 6.09307 6.19332 6.22412 6.28978 6.44128 6.50180 6.52110 6.66011 6.79436 6.94825 7.07391 7.12404 7.32804 7.86280 8.10466 8.29008 8.61011 8.64395 8.88580 9.07912 9.52562 10.32868 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.004873 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.171626 B = 5743.979762 C = 8891.121059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.166 4.166 4 N -0.737 5.737 5 C 0.701 3.299 6 O -0.538 6.538 7 N -0.665 5.665 8 C 0.351 3.649 9 C -0.207 4.207 10 C 0.339 3.661 11 N -0.489 5.489 12 C 0.259 3.741 13 C -0.424 4.424 14 H 0.088 0.912 15 C 0.074 3.926 16 N -0.754 5.754 17 Si 0.913 3.087 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.260 1.260 21 N -0.316 5.316 22 N -0.359 5.359 23 C 0.194 3.806 24 C -0.111 4.111 25 C -0.098 4.098 26 C -0.146 4.146 27 C -0.098 4.098 28 C -0.163 4.163 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.403 0.597 38 H 0.278 0.722 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 -0.017 4.694 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 C -0.224 4.224 4 N -0.394 5.394 5 C 0.400 3.600 6 O -0.410 6.410 7 N -0.317 5.317 8 C 0.130 3.870 9 C -0.226 4.226 10 C 0.027 3.973 11 N -0.171 5.171 12 C 0.106 3.894 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.380 5.380 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.184 1.184 21 N -0.145 5.145 22 N -0.134 5.134 23 C 0.099 3.901 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.165 4.165 27 C -0.117 4.117 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.240 0.760 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.150 0.270 3.490 16.525 hybrid contribution -0.106 0.156 0.439 0.478 sum -16.256 0.426 3.928 16.729 Atomic orbital electron populations 1.22078 0.94206 1.02531 1.02833 1.20809 0.93316 0.92854 0.87840 1.22220 1.03126 0.95537 1.01564 1.45146 1.16808 1.59904 1.17535 1.15820 0.82154 0.78913 0.83137 1.91049 1.55296 1.62734 1.31890 1.41842 1.11642 1.59892 1.18307 1.17581 0.82453 0.89317 0.97636 1.16752 0.93003 1.01128 1.11747 1.23982 0.90799 0.91062 0.91415 1.80900 1.10825 1.13576 1.11804 1.20248 0.91616 0.87715 0.89798 1.18671 0.89808 1.08563 1.29228 0.89350 1.25885 1.00859 0.94284 0.93857 1.69879 1.34698 1.09602 1.23822 0.86191 0.81172 0.78492 0.80368 1.19503 1.20140 1.18392 1.79173 0.79729 1.25961 1.29594 1.46345 1.09334 1.19693 1.37993 1.17431 0.91064 0.90061 0.91499 1.21159 1.00021 0.91614 1.00330 1.21042 0.95268 0.99728 0.95644 1.21055 0.99867 0.94891 1.00704 1.20832 0.98881 0.93643 0.98299 1.20958 0.99768 0.99405 0.98347 0.92147 0.90841 0.91998 0.89240 0.92797 0.91303 0.91781 0.77288 0.76035 0.91140 0.84620 0.85764 0.86224 0.85889 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.38 37.16 0.35 -0.82 16 2 C 0.16 1.76 3.18 -67.93 -0.22 1.54 16 3 C -0.17 -1.95 9.48 37.15 0.35 -1.60 16 4 N -0.74 -8.81 5.08 -58.68 -0.30 -9.11 16 5 C 0.70 11.96 8.13 -86.92 -0.71 11.26 16 6 O -0.54 -11.75 11.60 5.30 0.06 -11.69 16 7 N -0.66 -10.99 5.24 -15.30 -0.08 -11.07 16 8 C 0.35 7.52 7.13 -152.45 -1.09 6.43 16 9 C -0.21 -5.16 5.90 -104.09 -0.61 -5.78 16 10 C 0.34 8.58 12.04 -22.48 -0.27 8.30 16 11 N -0.49 -12.47 17.92 41.83 0.75 -11.72 16 12 C 0.26 7.01 6.93 -82.74 -0.57 6.44 16 13 C -0.42 -11.48 9.26 -37.93 -0.35 -11.83 16 14 H 0.09 2.35 7.85 -52.49 -0.41 1.94 16 15 C 0.07 1.88 5.49 -17.32 -0.10 1.79 16 16 N -0.75 -19.76 11.97 55.55 0.67 -19.09 16 17 Si 0.91 19.12 29.56 -169.99 -5.03 14.09 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 N -0.32 -8.29 10.58 33.37 0.35 -7.94 16 22 N -0.36 -7.88 3.68 -9.39 -0.03 -7.91 16 23 C 0.19 3.52 6.22 -83.69 -0.52 3.00 16 24 C -0.11 -1.89 9.83 -39.37 -0.39 -2.28 16 25 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 26 C -0.15 -1.66 10.04 -39.53 -0.40 -2.06 16 27 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 28 C -0.16 -2.30 8.61 -39.37 -0.34 -2.64 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 3.29 8.63 -40.82 -0.35 2.94 16 37 H 0.40 5.07 6.09 -40.82 -0.25 4.82 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.12 1.46 6.48 -52.49 -0.34 1.12 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -33.74 374.68 -8.72 -42.47 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.11 Total: 7.76 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -5.65 Total: 8.56 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 1.35 Total: -66.84 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.69 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.74 -8.72 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202518320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.415 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds