Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47589 * 2 1 4 4 N 1.46501 * 109.46896 * 120.00695 * 2 1 3 5 5 C 1.34770 * 120.00424 * 154.99889 * 4 2 1 6 6 O 1.21580 * 120.00091 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00551 * 179.97438 * 5 4 2 8 8 C 1.38446 * 120.00265 * 186.26857 * 7 5 4 9 9 C 1.38652 * 126.09779 * 29.16158 * 8 7 5 10 10 C 1.43198 * 126.81607 * 0.02562 * 9 8 7 11 11 N 4.21188 * 127.87428 * 357.92403 * 3 1 2 12 12 C 1.47403 * 106.36551 * 180.02562 * 9 8 7 13 13 C 1.40846 * 126.47375 * 180.02562 * 12 9 8 14 14 H 1.08001 * 119.99938 * 5.08724 * 13 12 9 15 15 C 1.40004 * 120.00332 * 185.07868 * 13 12 9 16 16 N 1.30818 * 119.99742 * 354.90576 * 15 13 12 17 17 Si 1.86796 * 120.00446 * 174.91036 * 15 13 12 18 18 H 1.48499 * 109.47190 * 94.99603 * 17 15 13 19 19 H 1.48499 * 109.47383 * 215.00179 * 17 15 13 20 20 H 1.48505 * 109.46885 * 334.99607 * 17 15 13 21 21 N 1.32784 * 107.05275 * 359.74576 * 12 9 8 22 22 N 1.36129 * 126.09856 * 209.19347 * 8 7 5 23 23 C 1.39782 * 125.18224 * 359.94819 * 22 8 7 24 24 C 1.38977 * 120.07756 * 137.42066 * 23 22 8 25 25 C 1.38078 * 119.91911 * 179.97438 * 24 23 22 26 26 C 1.38308 * 120.08238 * 359.97438 * 25 24 23 27 27 C 1.38318 * 120.15544 * 0.02562 * 26 25 24 28 28 C 1.38070 * 120.08111 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.46732 * 300.00096 * 1 2 3 30 30 H 1.09003 * 109.46559 * 59.99775 * 1 2 3 31 31 H 1.08994 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46953 * 239.99855 * 2 1 3 33 33 H 1.09003 * 109.47092 * 59.99939 * 3 2 1 34 34 H 1.09003 * 109.47610 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47456 * 300.00285 * 3 2 1 36 36 H 0.97009 * 119.99789 * 334.98814 * 4 2 1 37 37 H 0.97006 * 119.99264 * 6.27024 * 7 5 4 38 38 H 0.96995 * 120.00047 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.03654 * 0.02562 * 24 23 22 40 40 H 1.08004 * 119.95753 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.92236 * 179.74560 * 26 25 24 42 42 H 1.08004 * 119.95994 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.04470 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 3.2402 -1.2594 1.1944 6 8 3.9371 -1.1995 0.2000 7 7 3.6896 -1.8944 2.2950 8 6 4.9909 -2.3650 2.3398 9 6 6.0782 -1.8254 1.6698 10 6 6.0733 -0.6835 0.8057 11 7 6.0696 0.2222 0.1204 12 6 7.2403 -2.6604 2.0237 13 6 8.5639 -2.4866 1.5748 14 1 8.8209 -1.6294 0.9701 15 6 9.5467 -3.4248 1.9127 16 7 9.2598 -4.4082 2.7263 17 14 11.2674 -3.2723 1.2020 18 1 12.1363 -2.5438 2.1609 19 1 11.8247 -4.6272 0.9596 20 1 11.2090 -2.5246 -0.0798 21 7 6.8046 -3.6037 2.8504 22 7 5.4309 -3.4404 3.0491 23 6 4.6317 -4.2535 3.8578 24 6 4.7873 -5.6342 3.8272 25 6 3.9964 -6.4343 4.6278 26 6 3.0506 -5.8633 5.4599 27 6 2.8930 -4.4895 5.4928 28 6 3.6795 -3.6833 4.6943 29 1 -0.3632 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.4621 -0.7388 1.9895 37 1 3.1012 -2.0218 3.0556 38 1 9.9405 -5.0584 2.9601 39 1 5.5265 -6.0807 3.1787 40 1 4.1171 -7.5073 4.6049 41 1 2.4306 -6.4918 6.0819 42 1 2.1537 -4.0469 6.1440 43 1 3.5562 -2.6106 4.7208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202518320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 86.889078 kcal Electronic energy + Delta-G solvation = -29018.975322 eV Core-core repulsion = 25065.435001 eV Total energy + Delta-G solvation = -3953.540322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31862 -40.91162 -39.56821 -37.40254 -36.87616 -36.15304 -35.40835 -33.70587 -32.51527 -31.87178 -30.31780 -29.58122 -28.11249 -27.79705 -24.89642 -23.64164 -23.27813 -22.28199 -21.87710 -21.67917 -20.02488 -19.55800 -18.52240 -17.83285 -17.22898 -16.96397 -16.88438 -16.61740 -16.20454 -15.89751 -15.54986 -15.17253 -14.99273 -14.95807 -14.59915 -14.33003 -14.03628 -13.90568 -13.64794 -13.46858 -13.38961 -13.16577 -13.08085 -12.98851 -12.84704 -12.72590 -12.40479 -12.34818 -12.06686 -11.98959 -11.94086 -11.78794 -11.40273 -11.21400 -10.70621 -10.31285 -10.26385 -9.92574 -9.18199 -8.85634 -8.52650 -6.58658 0.02133 0.42236 0.81028 1.09962 1.34795 1.42026 1.56347 1.90643 1.99707 2.10027 2.25600 2.27236 2.82020 2.85901 3.00995 3.45291 3.75977 3.90052 3.92590 4.03538 4.11674 4.27145 4.28859 4.38450 4.49568 4.52108 4.56325 4.67903 4.73492 4.80149 4.87279 4.91839 4.99406 5.10657 5.19793 5.23128 5.31998 5.37319 5.46505 5.48007 5.55288 5.59248 5.74023 5.96463 6.19319 6.54525 6.63927 6.82293 6.92929 7.13425 7.34948 7.62094 8.44565 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.004873 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.171626 B = 5743.979762 C = 8891.121059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 C -0.161 4.161 4 N -0.711 5.711 5 C 0.695 3.305 6 O -0.587 6.587 7 N -0.646 5.646 8 C 0.379 3.621 9 C -0.262 4.262 10 C 0.345 3.655 11 N -0.513 5.513 12 C 0.236 3.764 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.036 3.964 16 N -0.787 5.787 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.266 1.266 21 N -0.344 5.344 22 N -0.353 5.353 23 C 0.140 3.860 24 C -0.135 4.135 25 C -0.097 4.097 26 C -0.124 4.124 27 C -0.083 4.083 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.424 0.576 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.913 -0.726 7.343 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.048 3.952 3 C -0.219 4.219 4 N -0.368 5.368 5 C 0.394 3.606 6 O -0.462 6.462 7 N -0.301 5.301 8 C 0.154 3.846 9 C -0.281 4.281 10 C 0.035 3.965 11 N -0.195 5.195 12 C 0.082 3.918 13 C -0.501 4.501 14 H 0.095 0.905 15 C -0.184 4.184 16 N -0.413 5.413 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.190 1.190 21 N -0.172 5.172 22 N -0.129 5.129 23 C 0.048 3.952 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.102 4.102 28 C -0.178 4.178 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.265 0.735 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.098 -0.466 6.219 21.043 hybrid contribution 0.778 0.223 -0.195 0.832 sum -19.320 -0.243 6.024 20.239 Atomic orbital electron populations 1.22006 0.90162 1.03558 1.04615 1.20971 0.96182 0.91814 0.86238 1.22171 0.99796 0.96431 1.03495 1.45020 1.14925 1.58045 1.18838 1.16130 0.83207 0.78856 0.82384 1.91027 1.57018 1.64390 1.33782 1.41672 1.09974 1.59266 1.19179 1.17478 0.83654 0.88234 0.95236 1.16820 0.93945 1.02594 1.14757 1.24129 0.90264 0.90980 0.91116 1.80840 1.11585 1.14424 1.12700 1.20523 0.92423 0.88537 0.90302 1.18870 0.91073 1.09417 1.30733 0.90504 1.26714 1.04526 0.93386 0.93751 1.69949 1.36282 1.10288 1.24774 0.85129 0.75993 0.78973 0.79271 1.18303 1.18643 1.18967 1.78978 0.82590 1.26070 1.29561 1.46406 1.08548 1.19826 1.38071 1.17982 0.93132 0.90283 0.93846 1.21097 1.00884 0.91912 1.01676 1.21345 0.94717 1.00676 0.94827 1.21627 0.98196 0.95548 0.98883 1.21393 0.98228 0.93511 0.97033 1.21212 0.98450 1.00676 0.97475 0.89907 0.89496 0.91345 0.92263 0.90742 0.96291 0.90010 0.74616 0.73503 0.90399 0.88240 0.83386 0.81779 0.81115 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.38 71.98 0.68 -0.97 16 2 C 0.15 3.25 3.18 44.99 0.14 3.39 16 3 C -0.16 -3.69 9.48 71.98 0.68 -3.00 16 4 N -0.71 -15.97 5.08 -457.83 -2.33 -18.30 16 5 C 0.69 24.01 8.13 179.05 1.46 25.46 16 6 O -0.59 -27.01 11.60 -3.97 -0.05 -27.06 16 7 N -0.65 -21.32 5.24 -320.57 -1.68 -23.00 16 8 C 0.38 16.96 7.13 131.99 0.94 17.90 16 9 C -0.26 -13.99 5.90 -19.52 -0.12 -14.11 16 10 C 0.35 18.76 12.04 88.33 1.06 19.82 16 11 N -0.51 -27.93 17.92 19.00 0.34 -27.59 16 12 C 0.24 13.75 6.93 42.05 0.29 14.04 16 13 C -0.46 -26.96 9.26 23.34 0.22 -26.75 16 14 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 15 C 0.04 1.92 5.49 85.27 0.47 2.39 16 16 N -0.79 -43.32 11.97 21.84 0.26 -43.06 16 17 Si 0.99 40.91 29.56 68.60 2.03 42.94 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 N -0.34 -19.22 10.58 -48.34 -0.51 -19.73 16 22 N -0.35 -16.20 3.68 -183.62 -0.68 -16.88 16 23 C 0.14 5.06 6.22 38.23 0.24 5.30 16 24 C -0.14 -4.68 9.83 22.41 0.22 -4.46 16 25 C -0.10 -2.30 10.04 22.25 0.22 -2.08 16 26 C -0.12 -2.13 10.04 22.31 0.22 -1.91 16 27 C -0.08 -1.43 10.04 22.25 0.22 -1.20 16 28 C -0.16 -3.97 8.61 22.41 0.19 -3.78 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.42 5.58 8.63 -92.70 -0.80 4.78 16 37 H 0.42 9.84 6.09 -92.70 -0.56 9.27 16 38 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 39 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.13 2.86 6.48 -2.91 -0.02 2.84 16 Total: -1.00 -84.63 374.68 4.25 -80.38 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.28 Total: 22.26 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 7.14 Total: 30.04 kcal Atomic # 7 Polarization: -143.97 SS G_CDS: -4.59 Total: -148.56 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -84.63 4.25 -80.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202518320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.269 kcal (2) G-P(sol) polarization free energy of solvation -84.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds