Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47298 * 2 1 4 4 N 1.46493 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99792 * 180.02562 * 4 3 2 6 6 O 1.21583 * 120.00098 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00323 * 180.02562 * 5 4 3 8 8 C 1.38449 * 120.00623 * 186.26776 * 7 5 4 9 9 C 1.38651 * 126.09566 * 29.14826 * 8 7 5 10 10 C 1.43199 * 126.81640 * 0.02562 * 9 8 7 11 11 N 5.95288 * 109.80202 * 21.34980 * 2 1 3 12 12 C 1.47403 * 106.36998 * 180.02562 * 9 8 7 13 13 C 1.40841 * 126.47477 * 180.02562 * 12 9 8 14 14 H 1.07999 * 120.00713 * 359.97438 * 13 12 9 15 15 C 1.40012 * 119.99748 * 180.02562 * 13 12 9 16 16 N 1.30812 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47428 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47442 * 120.00082 * 17 15 13 20 20 H 1.48500 * 109.47541 * 239.99834 * 17 15 13 21 21 N 1.32792 * 107.04543 * 359.74902 * 12 9 8 22 22 N 1.36124 * 126.10313 * 209.19289 * 8 7 5 23 23 C 1.39788 * 125.18249 * 359.94189 * 22 8 7 24 24 C 1.38975 * 120.08088 * 137.43024 * 23 22 8 25 25 C 1.38071 * 119.92271 * 179.97438 * 24 23 22 26 26 C 1.38315 * 120.07841 * 359.97438 * 25 24 23 27 27 C 1.38312 * 120.16104 * 0.02562 * 26 25 24 28 28 C 1.38080 * 120.07403 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47558 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46620 * 299.99590 * 1 2 3 31 31 H 1.09005 * 109.47256 * 59.99397 * 1 2 3 32 32 H 1.08997 * 109.46954 * 240.00227 * 2 1 3 33 33 H 1.08998 * 109.47368 * 120.00217 * 2 1 3 34 34 H 1.08997 * 109.46933 * 60.00214 * 3 2 1 35 35 H 1.09004 * 109.46720 * 300.00560 * 3 2 1 36 36 H 0.96995 * 120.00482 * 0.02562 * 4 3 2 37 37 H 0.97001 * 119.99689 * 6.26175 * 7 5 4 38 38 H 0.97001 * 120.00312 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.03330 * 359.97438 * 24 23 22 40 40 H 1.07994 * 119.96284 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.92029 * 179.75195 * 26 25 24 42 42 H 1.07991 * 119.96188 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.03551 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5710 3.6626 0.0002 7 7 5.5266 2.6097 -0.0013 8 6 6.2190 3.8014 0.1300 9 6 5.7807 4.9308 0.8044 10 6 4.5358 5.0893 1.4941 11 7 3.5467 5.2165 2.0391 12 6 6.8505 5.9360 0.6704 13 6 6.8437 7.2414 1.1990 14 1 5.9935 7.5899 1.7667 15 6 7.9388 8.0879 0.9878 16 7 8.9679 7.6665 0.2990 17 14 7.9295 9.8195 1.6883 18 1 6.6590 10.0502 2.4215 19 1 9.0746 9.9829 2.6197 20 1 8.0481 10.8021 0.5812 21 7 7.8243 5.3761 -0.0378 22 7 7.4512 4.0736 -0.3806 23 6 8.2277 3.1838 -1.1284 24 6 8.9045 3.6290 -2.2576 25 6 9.6710 2.7474 -2.9935 26 6 9.7662 1.4225 -2.6078 27 6 9.0940 0.9758 -1.4845 28 6 8.3248 1.8516 -0.7444 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9900 0.6025 -0.0013 37 1 6.0115 1.7748 -0.0940 38 1 9.7268 8.2528 0.1529 39 1 8.8309 4.6635 -2.5590 40 1 10.1969 3.0926 -3.8713 41 1 10.3632 0.7342 -3.1876 42 1 9.1702 -0.0594 -1.1865 43 1 7.8005 1.5022 0.1328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202584367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 105.694831 kcal Electronic energy + Delta-G solvation = -28640.336616 eV Core-core repulsion = 24687.611773 eV Total energy + Delta-G solvation = -3952.724843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76877 -39.46277 -38.23859 -36.06562 -35.03962 -34.51224 -33.66835 -32.59597 -32.13437 -30.79629 -28.80904 -28.16028 -26.27678 -25.88115 -23.22444 -22.38846 -21.91573 -21.36774 -20.43496 -20.21048 -18.49688 -18.12850 -16.82327 -16.36108 -16.07134 -15.80343 -15.53112 -15.10877 -14.96701 -14.62558 -14.58164 -14.15607 -13.68042 -13.49524 -13.24048 -13.15197 -12.86491 -12.69998 -12.50660 -12.29835 -11.79362 -11.70144 -11.59653 -11.38926 -11.38022 -11.28242 -11.15742 -11.02785 -10.94433 -10.72132 -10.29702 -10.07281 -9.90725 -9.57491 -9.09131 -8.92221 -8.82666 -8.63477 -7.59717 -7.10127 -6.62017 -4.58772 1.29604 1.51661 2.30642 2.54857 3.03155 3.16228 3.23053 3.35867 3.51735 3.82832 3.98285 4.02284 4.12228 4.22606 4.59117 4.71927 4.79105 4.96626 4.98552 5.03746 5.23265 5.37390 5.40755 5.44388 5.50764 5.51390 5.60275 5.68165 5.75580 5.80416 5.88400 5.92873 6.07986 6.17416 6.21755 6.39351 6.43761 6.51453 6.65711 6.78683 6.93491 7.06413 7.12123 7.32344 7.84599 8.09567 8.29036 8.60527 8.62673 8.88516 9.07422 9.52444 10.32836 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008266 B = 0.004359 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.650376 B = 6421.961713 C = 9541.790375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.137 3.863 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.538 6.538 7 N -0.664 5.664 8 C 0.351 3.649 9 C -0.207 4.207 10 C 0.338 3.662 11 N -0.490 5.490 12 C 0.259 3.741 13 C -0.423 4.423 14 H 0.089 0.911 15 C 0.073 3.927 16 N -0.754 5.754 17 Si 0.914 3.086 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.273 1.273 21 N -0.316 5.316 22 N -0.358 5.358 23 C 0.194 3.806 24 C -0.111 4.111 25 C -0.098 4.098 26 C -0.146 4.146 27 C -0.098 4.098 28 C -0.164 4.164 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.395 0.605 37 H 0.403 0.597 38 H 0.278 0.722 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -17.294 -5.378 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.014 3.986 4 N -0.399 5.399 5 C 0.399 3.601 6 O -0.410 6.410 7 N -0.316 5.316 8 C 0.130 3.870 9 C -0.226 4.226 10 C 0.027 3.973 11 N -0.172 5.172 12 C 0.106 3.894 13 C -0.462 4.462 14 H 0.107 0.893 15 C -0.150 4.150 16 N -0.380 5.380 17 Si 0.738 3.262 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.144 5.144 22 N -0.133 5.133 23 C 0.100 3.900 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.165 4.165 27 C -0.117 4.117 28 C -0.185 4.185 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.228 0.772 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.965 -16.002 -5.156 17.071 hybrid contribution 0.282 -0.346 0.259 0.515 sum -2.683 -16.347 -4.898 17.275 Atomic orbital electron populations 1.21671 0.94463 1.02028 1.02555 1.21733 0.97021 0.95861 1.02621 1.21289 0.77619 0.96868 1.02871 1.44995 1.07417 1.06578 1.80878 1.15799 0.80891 0.84812 0.78623 1.91058 1.66632 1.29357 1.53929 1.41817 1.05306 1.07746 1.76773 1.17580 0.86904 0.86483 0.96046 1.16752 0.94609 0.96872 1.14409 1.24021 0.90676 0.91828 0.90762 1.80936 1.11164 1.10314 1.14747 1.20254 0.85784 0.92286 0.91034 1.18716 1.03295 0.93735 1.30467 0.89289 1.25895 0.94597 1.00486 0.93989 1.69878 1.04347 1.36187 1.27569 0.86142 0.79444 0.81248 0.79334 1.18302 1.19886 1.19869 1.79176 1.19986 0.84465 1.30807 1.46352 1.11052 1.13505 1.42438 1.17429 0.93820 0.87916 0.90880 1.21159 0.97802 1.01119 0.93033 1.21042 0.97961 0.93226 0.99456 1.21057 1.01437 0.95978 0.98030 1.20832 0.96645 0.98978 0.95204 1.20965 1.03571 0.93009 1.00944 0.92237 0.92211 0.92274 0.91349 0.91308 0.91255 0.91446 0.77180 0.76006 0.91168 0.84607 0.85750 0.86216 0.85879 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.99 6.05 -26.73 -0.16 -1.15 16 3 C 0.14 1.54 5.67 -4.04 -0.02 1.52 16 4 N -0.74 -8.92 5.56 -65.23 -0.36 -9.28 16 5 C 0.70 12.11 8.17 -86.92 -0.71 11.40 16 6 O -0.54 -11.98 11.94 5.29 0.06 -11.92 16 7 N -0.66 -11.05 5.24 -15.30 -0.08 -11.13 16 8 C 0.35 7.55 7.13 -152.45 -1.09 6.47 16 9 C -0.21 -5.20 5.90 -104.09 -0.61 -5.81 16 10 C 0.34 8.65 12.05 -22.46 -0.27 8.38 16 11 N -0.49 -12.66 17.92 41.86 0.75 -11.91 16 12 C 0.26 7.03 6.94 -82.74 -0.57 6.46 16 13 C -0.42 -11.48 9.26 -37.93 -0.35 -11.83 16 14 H 0.09 2.38 7.85 -52.49 -0.41 1.97 16 15 C 0.07 1.86 5.50 -17.32 -0.10 1.77 16 16 N -0.75 -19.76 11.95 55.55 0.66 -19.10 16 17 Si 0.91 19.13 29.56 -169.99 -5.02 14.10 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 N -0.32 -8.30 10.56 33.37 0.35 -7.95 16 22 N -0.36 -7.89 3.68 -9.39 -0.03 -7.93 16 23 C 0.19 3.52 6.22 -83.68 -0.52 3.00 16 24 C -0.11 -1.89 9.83 -39.37 -0.39 -2.27 16 25 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 26 C -0.15 -1.66 10.04 -39.53 -0.40 -2.05 16 27 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 28 C -0.16 -2.30 8.61 -39.37 -0.34 -2.64 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.39 3.26 8.50 -40.82 -0.35 2.91 16 37 H 0.40 5.08 6.09 -40.82 -0.25 4.83 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 39 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.46 6.48 -52.49 -0.34 1.12 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -34.25 375.52 -9.10 -43.35 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.13 Total: 6.74 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -5.96 Total: 9.37 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: 1.29 Total: -67.30 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.06 Total: -11.92 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.25 -9.10 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202584367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.043 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds