Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.64583 * 2 1 4 4 C 1.54940 * 110.87615 * 236.73950 * 2 1 3 5 5 N 1.48532 * 103.22844 * 204.15917 * 4 2 1 6 6 C 1.46891 * 111.00121 * 159.72311 * 5 4 2 7 7 C 1.50701 * 109.47361 * 169.99951 * 6 5 4 8 8 C 1.39681 * 127.05086 * 94.99854 * 7 6 5 9 9 N 1.31374 * 105.89938 * 179.97438 * 8 7 6 10 10 N 1.28605 * 108.72190 * 0.02562 * 9 8 7 11 11 C 1.46490 * 124.62109 * 180.02562 * 10 9 8 12 12 N 1.28603 * 110.75739 * 359.74709 * 10 9 8 13 13 C 1.48121 * 105.82528 * 39.26239 * 5 4 2 14 14 C 1.53999 * 106.94384 * 334.59273 * 13 5 4 15 15 H 1.09005 * 110.30511 * 120.26455 * 14 13 5 16 16 N 1.46499 * 110.30843 * 242.33263 * 14 13 5 17 17 C 1.34778 * 120.00278 * 272.20751 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99873 * 25 23 21 29 29 H 1.08999 * 109.46523 * 296.84777 * 1 2 3 30 30 H 1.08999 * 109.46698 * 56.84515 * 1 2 3 31 31 H 1.08990 * 109.46865 * 176.84740 * 1 2 3 32 32 H 1.08999 * 110.66504 * 322.59681 * 4 2 1 33 33 H 1.08997 * 110.66172 * 85.55491 * 4 2 1 34 34 H 1.09001 * 109.47355 * 290.00129 * 6 5 4 35 35 H 1.09000 * 109.47311 * 49.99983 * 6 5 4 36 36 H 1.07995 * 127.04556 * 359.95734 * 8 7 6 37 37 H 1.09001 * 109.47753 * 89.97036 * 11 10 9 38 38 H 1.09005 * 109.47265 * 209.97371 * 11 10 9 39 39 H 1.08999 * 109.47388 * 329.97398 * 11 10 9 40 40 H 1.08997 * 109.95331 * 215.29016 * 13 5 4 41 41 H 1.09002 * 109.99440 * 93.92107 * 13 5 4 42 42 H 0.97000 * 119.99972 * 92.21106 * 16 14 13 43 43 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 44 44 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 45 45 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0822 -0.7940 -1.2105 5 7 3.4360 -1.2051 -0.7584 6 6 3.9293 -2.3449 -1.5428 7 6 5.3852 -2.5772 -1.2304 8 6 5.9132 -3.4712 -0.2960 9 7 7.2181 -3.3355 -0.3655 10 7 7.4939 -2.4460 -1.2525 11 6 8.8490 -2.0218 -1.6124 12 7 6.4181 -1.9839 -1.7844 13 6 3.2917 -1.5682 0.6703 14 6 2.0771 -0.7907 1.2106 15 1 1.3213 -1.4817 1.5839 16 7 2.4933 0.1287 2.2725 17 6 2.5460 -0.2970 3.5502 18 8 2.2493 -1.4413 3.8207 19 6 2.9735 0.6490 4.6426 20 16 2.9428 -0.2134 6.2336 21 6 3.4709 1.0883 7.2973 22 1 3.6979 2.0617 6.8881 23 6 3.5892 0.8645 8.6621 24 7 3.3121 -0.3217 9.1609 25 14 4.1416 2.2466 9.7908 26 1 2.9544 2.9997 10.2689 27 1 4.8671 1.6758 10.9540 28 1 5.0425 3.1632 9.0467 29 1 -0.3632 0.4641 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3633 -1.0260 -0.0565 32 1 1.4623 -1.6674 -1.4127 33 1 2.1454 -0.1563 -2.0922 34 1 3.3563 -3.2365 -1.2881 35 1 3.8154 -2.1312 -2.6055 36 1 5.3618 -4.1372 0.3510 37 1 9.2226 -2.6478 -2.4228 38 1 8.8301 -0.9812 -1.9363 39 1 9.5029 -2.1208 -0.7460 40 1 4.1892 -1.2827 1.2191 41 1 3.1193 -2.6401 0.7670 42 1 2.7309 1.0439 2.0560 43 1 2.2907 1.4980 4.6758 44 1 3.9844 1.0034 4.4412 45 1 3.3952 -0.4782 10.1146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206089692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = 53.154157 kcal Electronic energy + Delta-G solvation = -26604.454063 eV Core-core repulsion = 22784.894837 eV Total energy + Delta-G solvation = -3819.559226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51919 -41.15438 -39.57753 -36.11712 -34.72258 -34.58463 -33.78552 -33.18899 -31.30717 -29.87744 -28.74605 -27.65047 -27.14411 -25.47185 -23.29721 -22.91808 -22.01682 -21.26295 -21.04289 -19.76726 -18.23183 -17.91498 -17.86535 -17.64514 -16.88595 -16.70760 -16.27755 -16.14733 -15.97258 -15.65570 -15.32467 -14.73335 -14.62559 -14.49491 -14.16229 -13.92184 -13.77253 -13.65655 -13.37757 -13.19414 -13.17434 -13.11595 -12.94115 -12.89409 -12.61459 -12.25808 -12.07587 -11.88136 -11.78481 -11.74734 -11.61154 -11.29059 -11.14822 -10.91479 -10.28594 -10.19803 -10.08409 -9.42848 -8.66860 -8.35343 -6.13142 0.80074 1.26402 1.35457 1.41765 1.46333 1.51516 1.57038 1.61135 2.25389 2.30094 2.98689 3.03267 3.11854 3.31640 3.52142 3.64831 3.81704 3.97527 4.04869 4.16467 4.23616 4.27215 4.28832 4.29247 4.39130 4.47130 4.49705 4.54863 4.57969 4.63605 4.72429 4.85210 4.89721 4.91201 5.08411 5.10054 5.19033 5.23545 5.37529 5.41082 5.56717 5.75537 5.82360 5.99439 6.19158 6.51042 7.05943 7.24876 7.32481 8.73903 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.002606 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.785333 B =10743.575667 C =12612.036063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.097 0.903 4 C 0.046 3.954 5 N -0.518 5.518 6 C 0.137 3.863 7 C 0.004 3.996 8 C -0.033 4.033 9 N -0.314 5.314 10 N -0.163 5.163 11 C 0.096 3.904 12 N -0.290 5.290 13 C 0.035 3.965 14 C 0.138 3.862 15 H 0.080 0.920 16 N -0.704 5.704 17 C 0.536 3.464 18 O -0.562 6.562 19 C -0.130 4.130 20 S -0.148 6.148 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.206 0.794 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 0.586 -29.109 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.081 4.081 5 N -0.243 5.243 6 C 0.007 3.993 7 C -0.159 4.159 8 C -0.215 4.215 9 N -0.156 5.156 10 N -0.066 5.066 11 C -0.042 4.042 12 N -0.133 5.133 13 C -0.094 4.094 14 C 0.032 3.968 15 H 0.098 0.902 16 N -0.358 5.358 17 C 0.322 3.678 18 O -0.440 6.440 19 C -0.282 4.282 20 S 0.079 5.921 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.183 1.183 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.223 0.777 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.278 -0.604 -28.966 29.157 hybrid contribution -0.345 1.039 1.226 1.643 sum 2.934 0.434 -27.740 27.898 Atomic orbital electron populations 1.21756 0.92778 1.02634 1.02626 1.22330 0.96711 0.99992 0.91849 0.88517 1.23355 0.87302 0.99497 0.97930 1.64759 1.24703 1.33526 1.01333 1.20492 0.85471 0.93529 0.99786 1.23258 0.96764 0.97625 0.98219 1.24996 0.89659 1.03921 1.02895 1.74029 1.18756 1.10922 1.11859 1.48419 1.08644 1.25327 1.24172 1.22509 0.73721 1.03650 1.04315 1.73940 0.93613 1.22533 1.23255 1.23228 0.97776 0.98582 0.89853 1.21983 0.95424 0.92010 0.87373 0.90170 1.45851 1.68971 1.15913 1.05018 1.20028 0.76340 0.87592 0.83887 1.90681 1.49324 1.20763 1.83198 1.23375 1.05587 1.02161 0.97048 1.85530 1.88882 1.20164 0.97482 1.23203 1.52601 0.98768 0.94922 0.90061 1.26131 0.94715 0.99280 0.99031 1.70185 1.46912 1.23609 1.14028 0.84956 0.78626 0.77344 0.77069 1.19178 1.20262 1.18303 0.93222 0.90077 0.92212 0.91535 0.87600 0.90355 0.87412 0.77734 0.87366 0.86597 0.87039 0.92864 0.92832 0.74896 0.87212 0.87815 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.17 71.98 0.66 -1.10 16 2 C -0.09 -1.28 3.36 -9.59 -0.03 -1.32 16 3 H 0.10 1.29 7.75 -2.38 -0.02 1.28 16 4 C 0.05 0.56 5.97 86.65 0.52 1.08 16 5 N -0.52 -9.25 5.24 -886.98 -4.65 -13.90 16 6 C 0.14 2.18 5.38 85.56 0.46 2.64 16 7 C 0.00 0.09 6.46 42.98 0.28 0.37 16 8 C -0.03 -0.76 12.14 85.11 1.03 0.27 16 9 N -0.31 -8.01 12.05 -56.87 -0.69 -8.70 16 10 N -0.16 -3.61 4.35 -206.57 -0.90 -4.51 16 11 C 0.10 1.08 11.57 127.77 1.48 2.56 16 12 N -0.29 -6.85 12.05 -47.24 -0.57 -7.42 16 13 C 0.03 0.80 6.05 86.41 0.52 1.32 16 14 C 0.14 3.08 2.89 45.87 0.13 3.21 16 15 H 0.08 2.12 7.31 -2.38 -0.02 2.10 16 16 N -0.70 -18.29 5.02 -438.37 -2.20 -20.49 16 17 C 0.54 19.96 7.85 87.66 0.69 20.65 16 18 O -0.56 -25.87 15.54 -3.02 -0.05 -25.92 16 19 C -0.13 -5.28 6.16 71.23 0.44 -4.84 16 20 S -0.15 -8.30 20.57 -56.49 -1.16 -9.47 16 21 C -0.55 -31.64 9.50 67.96 0.65 -31.00 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 25 Si 1.00 44.03 29.55 68.60 2.03 46.05 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 32 H 0.07 0.65 7.91 -2.39 -0.02 0.63 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.00 7.74 -2.39 -0.02 0.98 16 35 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 1.56 7.92 -2.39 -0.02 1.54 16 41 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 42 H 0.41 8.33 8.36 -92.71 -0.78 7.56 16 43 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 44 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -83.48 390.90 -0.38 -83.87 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.22 Total: 21.55 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 7.29 Total: -4.93 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -8.71 Total: -111.16 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.47 kcal Total: -83.48 -0.38 -83.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206089692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.020 kcal (2) G-P(sol) polarization free energy of solvation -83.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds