Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 N 1.30828 * 125.96723 * 90.02421 * 7 6 5 9 9 C 1.33236 * 109.83070 * 180.02562 * 8 7 6 10 10 N 1.30712 * 108.94644 * 359.97438 * 9 8 7 11 11 N 1.34428 * 125.95506 * 269.70708 * 7 6 5 12 12 C 1.46503 * 126.82752 * 0.02562 * 11 7 6 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08003 * 125.52610 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47301 * 89.99422 * 12 11 7 38 38 H 1.09001 * 109.46965 * 209.99872 * 12 11 7 39 39 H 1.09000 * 109.46440 * 329.99102 * 12 11 7 40 40 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 41 41 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 42 42 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 7 5.2269 -3.8330 -0.0013 9 6 6.4953 -4.0673 0.3324 10 7 7.2703 -3.2802 -0.3664 11 7 6.4316 -2.5119 -1.1902 12 6 6.8452 -1.4908 -2.1559 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 2.9578 3.0264 10.2612 27 1 4.8354 1.6609 10.9619 28 1 5.0555 3.1358 9.0495 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 6.8290 -4.7904 1.0620 37 1 6.8896 -0.5202 -1.6619 38 1 7.8291 -1.7424 -2.5517 39 1 6.1245 -1.4502 -2.9727 40 1 4.1886 -1.2872 1.2113 41 1 3.1160 -2.6429 0.7605 42 1 2.7560 1.0338 2.0522 43 1 3.9823 0.9803 4.4493 44 1 2.2975 1.5122 4.6663 45 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206089849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = 64.981976 kcal Electronic energy + Delta-G solvation = -26959.934995 eV Core-core repulsion = 23140.888661 eV Total energy + Delta-G solvation = -3819.046334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33208 -40.08449 -38.39803 -35.02194 -34.21133 -33.07889 -32.40615 -31.40133 -29.96611 -28.38511 -27.63447 -26.91881 -25.48165 -24.75455 -22.27360 -21.88961 -21.06427 -20.11005 -19.99571 -17.80101 -17.20177 -16.86749 -16.65777 -16.17513 -15.53271 -15.26715 -15.02367 -14.79274 -14.77173 -14.73068 -13.99519 -13.66513 -13.54047 -13.46541 -13.41387 -13.15157 -12.85760 -12.70402 -12.50481 -12.39700 -12.09777 -11.83420 -11.81203 -11.37352 -11.24795 -11.04615 -11.01105 -10.94958 -10.73579 -10.19512 -9.91862 -9.81367 -9.79220 -9.36016 -9.05012 -8.89698 -8.82756 -8.20769 -6.47251 -6.19503 -3.89768 1.34640 2.07973 2.72704 3.05037 3.11153 3.23730 3.29292 3.33628 3.56726 3.72145 3.81797 4.20439 4.22391 4.23838 4.36110 4.51204 4.71659 4.75723 4.82783 4.96936 5.03982 5.10105 5.14200 5.15563 5.20194 5.22318 5.27706 5.29703 5.46527 5.58086 5.63095 5.77269 5.86581 5.90411 5.95035 5.96705 6.07173 6.16481 6.25459 6.40866 6.48811 6.57706 6.70270 7.61528 7.74115 7.91266 8.37253 8.64783 9.25717 10.87916 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.002681 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.366032 B =10441.262831 C =11899.082102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.041 3.959 5 N -0.513 5.513 6 C 0.123 3.877 7 C 0.279 3.721 8 N -0.535 5.535 9 C 0.204 3.796 10 N -0.321 5.321 11 N -0.371 5.371 12 C 0.099 3.901 13 C 0.026 3.974 14 C 0.142 3.858 15 H 0.098 0.902 16 N -0.729 5.729 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.219 0.781 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 0.232 -28.885 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.007 4.007 7 C 0.002 3.998 8 N -0.263 5.263 9 C -0.099 4.099 10 N -0.149 5.149 11 N -0.162 5.162 12 C -0.043 4.043 13 C -0.103 4.103 14 C 0.036 3.964 15 H 0.116 0.884 16 N -0.383 5.383 17 C 0.318 3.682 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.235 0.765 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.719 -1.483 -28.194 28.242 hybrid contribution 0.474 2.086 0.362 2.170 sum 1.193 0.603 -27.832 27.864 Atomic orbital electron populations 1.21778 0.93600 1.02347 1.02424 1.22357 0.96255 0.99983 0.93325 0.89193 1.23338 0.88116 0.99043 0.98160 1.64972 1.24154 1.31353 1.03353 1.20734 0.90253 0.93144 0.96580 1.24001 0.87916 0.93200 0.94672 1.70509 1.22283 1.17989 1.15507 1.25993 0.86565 0.98390 0.98963 1.78073 1.17728 1.09954 1.09122 1.50190 1.04632 1.30262 1.31087 1.21929 1.02575 0.89440 0.90369 1.23423 0.99351 1.00080 0.87441 1.21806 0.95654 0.91889 0.87056 0.88374 1.46056 1.70499 1.15581 1.06165 1.20339 0.76666 0.88487 0.82712 1.90709 1.46290 1.19529 1.82324 1.23530 1.03936 1.02203 1.00718 1.85402 1.87701 1.18169 0.91965 1.22870 1.51936 0.99376 0.94193 0.90976 1.24991 0.94989 0.96400 0.97215 1.70021 1.45381 1.21516 1.13358 0.86171 0.78792 0.80945 0.79614 1.20280 1.20751 1.19707 0.91811 0.92171 0.92273 0.92673 0.89320 0.90546 0.88387 0.76504 0.89837 0.89183 0.89133 0.90080 0.91177 0.76748 0.89341 0.89272 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.16 37.16 0.34 -0.70 16 2 C -0.10 -0.79 3.37 -88.76 -0.30 -1.09 16 3 H 0.09 0.67 7.76 -51.93 -0.40 0.27 16 4 C 0.04 0.27 6.00 -1.89 -0.01 0.26 16 5 N -0.51 -4.48 5.39 -231.89 -1.25 -5.73 16 6 C 0.12 0.96 5.33 -4.98 -0.03 0.93 16 7 C 0.28 3.08 6.44 -155.70 -1.00 2.08 16 8 N -0.53 -7.19 10.40 -11.97 -0.12 -7.31 16 9 C 0.20 2.58 13.03 -91.82 -1.20 1.38 16 10 N -0.32 -4.16 12.70 29.29 0.37 -3.78 16 11 N -0.37 -3.95 4.04 -65.10 -0.26 -4.21 16 12 C 0.10 0.59 11.33 59.85 0.68 1.27 16 13 C 0.03 0.32 5.36 -2.76 -0.01 0.30 16 14 C 0.14 1.69 2.92 -66.57 -0.19 1.49 16 15 H 0.10 1.37 7.26 -51.93 -0.38 0.99 16 16 N -0.73 -9.86 5.01 -52.49 -0.26 -10.13 16 17 C 0.53 10.06 7.85 -10.98 -0.09 9.97 16 18 O -0.51 -11.84 15.51 5.55 0.09 -11.75 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 25 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.06 0.33 7.73 -51.92 -0.40 -0.07 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.10 0.47 7.12 -51.93 -0.37 0.10 16 36 H 0.22 2.07 8.06 -52.48 -0.42 1.65 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.29 7.10 -51.93 -0.37 -0.08 16 40 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 41 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 42 H 0.40 4.31 8.38 -40.82 -0.34 3.97 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -37.89 387.16 -10.30 -48.19 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.80 Total: 2.00 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.39 Total: -0.16 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.79 Total: -56.89 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.89 -10.30 -48.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206089849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.173 kcal (2) G-P(sol) polarization free energy of solvation -37.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds