Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 N 1.30828 * 125.96723 * 90.02421 * 7 6 5 9 9 C 1.33236 * 109.83070 * 180.02562 * 8 7 6 10 10 N 1.30712 * 108.94644 * 359.97438 * 9 8 7 11 11 N 1.34428 * 125.95506 * 269.70708 * 7 6 5 12 12 C 1.46503 * 126.82752 * 0.02562 * 11 7 6 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08003 * 125.52610 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47301 * 89.99422 * 12 11 7 38 38 H 1.09001 * 109.46965 * 209.99872 * 12 11 7 39 39 H 1.09000 * 109.46440 * 329.99102 * 12 11 7 40 40 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 41 41 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 42 42 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 7 5.2269 -3.8330 -0.0013 9 6 6.4953 -4.0673 0.3324 10 7 7.2703 -3.2802 -0.3664 11 7 6.4316 -2.5119 -1.1902 12 6 6.8452 -1.4908 -2.1559 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 2.9578 3.0264 10.2612 27 1 4.8354 1.6609 10.9619 28 1 5.0555 3.1358 9.0495 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 6.8290 -4.7904 1.0620 37 1 6.8896 -0.5202 -1.6619 38 1 7.8291 -1.7424 -2.5517 39 1 6.1245 -1.4502 -2.9727 40 1 4.1886 -1.2872 1.2113 41 1 3.1160 -2.6429 0.7605 42 1 2.7560 1.0338 2.0522 43 1 3.9823 0.9803 4.4493 44 1 2.2975 1.5122 4.6663 45 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206089849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = 36.419087 kcal Electronic energy + Delta-G solvation = -26961.173575 eV Core-core repulsion = 23140.888661 eV Total energy + Delta-G solvation = -3820.284913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17321 -41.17753 -39.61431 -35.99391 -35.00330 -34.59981 -34.10093 -32.21874 -31.33526 -29.41829 -28.45214 -27.68068 -27.53939 -25.56581 -23.13587 -22.85177 -21.93281 -21.30122 -20.86894 -19.78743 -18.01690 -17.87152 -17.81793 -17.32899 -16.89412 -16.55812 -16.23671 -16.10028 -15.89035 -15.67697 -15.48028 -14.75626 -14.56462 -14.45708 -14.18993 -14.07118 -14.03986 -13.80065 -13.37223 -13.30458 -13.18185 -13.09167 -12.90041 -12.72778 -12.62562 -12.56743 -12.27522 -11.89973 -11.76099 -11.64570 -11.15484 -11.10902 -10.95026 -10.79342 -10.61919 -10.29447 -10.13614 -9.58430 -8.68550 -8.35854 -6.14368 0.51423 1.25214 1.40276 1.41504 1.45488 1.56073 1.58241 1.82733 2.23984 2.27520 2.87990 2.98119 3.04735 3.30518 3.50805 3.55383 3.58988 3.82012 3.95594 4.03004 4.18695 4.22697 4.27102 4.33060 4.38631 4.45625 4.46920 4.54444 4.61433 4.68031 4.72699 4.82347 4.86332 4.89332 5.08102 5.21138 5.25375 5.36052 5.37285 5.40099 5.51082 5.64712 5.77086 5.88225 6.18360 6.48700 7.04656 7.05089 7.23135 8.73480 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.002681 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.366032 B =10441.262831 C =11899.082102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.105 0.895 4 C 0.045 3.955 5 N -0.507 5.507 6 C 0.124 3.876 7 C 0.275 3.725 8 N -0.573 5.573 9 C 0.187 3.813 10 N -0.348 5.348 11 N -0.370 5.370 12 C 0.088 3.912 13 C 0.040 3.960 14 C 0.137 3.863 15 H 0.073 0.927 16 N -0.703 5.703 17 C 0.533 3.467 18 O -0.564 6.564 19 C -0.129 4.129 20 S -0.151 6.151 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.258 1.258 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.416 0.584 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 3.285 -31.962 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.123 0.877 4 C -0.081 4.081 5 N -0.232 5.232 6 C -0.006 4.006 7 C -0.002 4.002 8 N -0.302 5.302 9 C -0.115 4.115 10 N -0.177 5.177 11 N -0.161 5.161 12 C -0.052 4.052 13 C -0.090 4.090 14 C 0.031 3.969 15 H 0.091 0.909 16 N -0.356 5.356 17 C 0.319 3.681 18 O -0.442 6.442 19 C -0.280 4.280 20 S 0.076 5.924 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.182 1.182 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.589 1.623 -31.353 31.400 hybrid contribution 0.506 1.140 1.153 1.699 sum 1.095 2.764 -30.199 30.345 Atomic orbital electron populations 1.21768 0.92880 1.02485 1.02783 1.22368 0.96708 1.00215 0.91446 0.87675 1.23492 0.86580 0.99709 0.98364 1.64989 1.25684 1.31410 1.01128 1.21010 0.88799 0.92982 0.97828 1.24572 0.89070 0.92523 0.93998 1.70480 1.22903 1.19760 1.17082 1.26377 0.86654 0.98956 0.99509 1.77970 1.18946 1.10736 1.09999 1.50484 1.04311 1.30316 1.30979 1.22342 1.04210 0.88250 0.90378 1.23064 0.97540 0.98438 0.89945 1.21981 0.95143 0.92039 0.87739 0.90891 1.45802 1.68555 1.16615 1.04652 1.20108 0.76472 0.87432 0.84082 1.90698 1.48865 1.21373 1.83265 1.23364 1.05569 1.02146 0.96915 1.85599 1.88142 1.21348 0.97326 1.23202 1.51995 0.99498 0.94780 0.89947 1.26153 0.94773 0.99257 0.99031 1.70190 1.46631 1.24088 1.13884 0.84936 0.78638 0.77280 0.77014 1.19113 1.20293 1.18223 0.93418 0.89523 0.92624 0.91774 0.85733 0.90231 0.84104 0.75166 0.89539 0.88447 0.85554 0.93617 0.93733 0.74680 0.87751 0.86989 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.16 71.98 0.66 -1.00 16 2 C -0.09 -1.12 3.37 -9.59 -0.03 -1.15 16 3 H 0.11 1.09 7.76 -2.39 -0.02 1.08 16 4 C 0.05 0.41 6.00 86.65 0.52 0.93 16 5 N -0.51 -7.51 5.39 -887.55 -4.78 -12.29 16 6 C 0.12 1.59 5.33 85.56 0.46 2.04 16 7 C 0.28 5.87 6.44 138.23 0.89 6.76 16 8 N -0.57 -15.99 10.40 -191.78 -1.99 -17.99 16 9 C 0.19 5.01 13.03 180.77 2.36 7.36 16 10 N -0.35 -9.18 12.70 -61.25 -0.78 -9.96 16 11 N -0.37 -7.52 4.04 -359.87 -1.45 -8.97 16 12 C 0.09 0.84 11.33 127.77 1.45 2.28 16 13 C 0.04 0.98 5.36 86.45 0.46 1.44 16 14 C 0.14 3.17 2.92 45.87 0.13 3.30 16 15 H 0.07 2.11 7.26 -2.38 -0.02 2.09 16 16 N -0.70 -18.53 5.01 -438.36 -2.20 -20.73 16 17 C 0.53 20.54 7.85 87.66 0.69 21.22 16 18 O -0.56 -27.30 15.51 -3.04 -0.05 -27.35 16 19 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -31.89 9.50 67.95 0.65 -31.25 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -57.03 13.22 21.65 0.29 -56.74 16 25 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.06 0.52 7.73 -2.38 -0.02 0.50 16 33 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 1.02 7.89 -2.39 -0.02 1.00 16 35 H 0.14 0.62 7.12 -2.39 -0.02 0.60 16 36 H 0.23 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.13 0.25 7.10 -2.39 -0.02 0.24 16 40 H 0.05 1.45 7.92 -2.39 -0.02 1.43 16 41 H 0.04 1.32 7.08 -2.39 -0.02 1.30 16 42 H 0.42 8.09 8.38 -92.71 -0.78 7.32 16 43 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -88.70 387.16 -0.74 -89.44 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.23 Total: 19.79 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 9.13 Total: 8.29 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -10.92 Total: -126.68 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -88.70 -0.74 -89.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206089849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.858 kcal (2) G-P(sol) polarization free energy of solvation -88.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds