Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.46809 * 2 1 4 4 C 1.35631 * 125.67438 * 262.47053 * 3 2 1 5 5 C 1.35520 * 108.85193 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.07598 * 180.02562 * 5 4 3 7 7 C 1.39890 * 107.85326 * 0.02562 * 5 4 3 8 8 C 1.37637 * 125.67946 * 82.43266 * 3 2 1 9 9 C 1.46672 * 126.22013 * 0.03140 * 8 3 2 10 10 O 1.21692 * 120.00071 * 26.76969 * 9 8 3 11 11 N 1.34776 * 119.99963 * 206.76401 * 9 8 3 12 12 C 1.46933 * 120.63129 * 6.78972 * 11 9 8 13 13 C 1.52761 * 109.00856 * 233.58624 * 12 11 9 14 14 C 1.53039 * 109.38324 * 305.58616 * 13 12 11 15 15 C 1.52998 * 109.46326 * 181.26287 * 14 13 12 16 16 N 1.46501 * 109.47044 * 64.93169 * 15 14 13 17 17 C 1.36937 * 120.00195 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99646 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00296 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47165 * 60.00666 * 21 19 17 23 23 H 1.48505 * 109.47245 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47443 * 300.00216 * 21 19 17 25 25 C 1.53039 * 109.53589 * 61.24072 * 14 13 12 26 26 C 1.46923 * 120.63044 * 187.07159 * 11 9 8 27 27 H 1.09003 * 109.47130 * 294.99993 * 1 2 3 28 28 H 1.08993 * 109.47263 * 55.00239 * 1 2 3 29 29 H 1.08998 * 109.46710 * 175.00350 * 1 2 3 30 30 H 1.08998 * 109.46993 * 240.00072 * 2 1 3 31 31 H 1.08997 * 109.47230 * 119.99648 * 2 1 3 32 32 H 1.07996 * 125.57655 * 359.96924 * 4 3 2 33 33 H 1.07994 * 126.45175 * 179.73751 * 7 5 4 34 34 H 1.09001 * 109.58654 * 353.41913 * 12 11 9 35 35 H 1.08998 * 109.58656 * 113.84117 * 12 11 9 36 36 H 1.08999 * 109.55918 * 185.55309 * 13 12 11 37 37 H 1.08996 * 109.36244 * 65.49615 * 13 12 11 38 38 H 1.09004 * 109.45880 * 301.22509 * 14 13 12 39 39 H 1.08997 * 109.47475 * 184.93181 * 15 14 13 40 40 H 1.09004 * 109.46786 * 304.93274 * 15 14 13 41 41 H 0.97003 * 120.00182 * 0.02562 * 16 15 14 42 42 H 0.97003 * 120.00461 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.49590 * 178.68105 * 25 14 13 44 44 H 1.09002 * 109.49938 * 58.58954 * 25 14 13 45 45 H 1.09001 * 109.58403 * 246.15287 * 26 11 9 46 46 H 1.08995 * 109.58524 * 6.43640 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4181 2.0788 -1.0923 5 6 2.8014 3.3192 -0.7035 6 17 3.3914 4.5792 -1.7418 7 6 2.6372 3.4039 0.6831 8 6 2.1471 2.1872 1.1083 9 6 1.8227 1.8185 2.4904 10 8 1.8704 0.6528 2.8363 11 7 1.4720 2.7708 3.3772 12 6 1.2656 4.1591 2.9425 13 6 2.1300 5.0824 3.7993 14 6 1.8258 4.8349 5.2786 15 6 2.6676 5.7807 6.1373 16 7 2.2600 7.1646 5.8826 17 6 2.8786 8.1931 6.5421 18 1 3.6672 7.9839 7.2497 19 6 2.4927 9.5043 6.3004 20 7 1.5319 9.7593 5.4377 21 14 3.3360 10.9071 7.2006 22 1 4.7871 10.8963 6.8851 23 1 2.7448 12.1990 6.7685 24 1 3.1463 10.7413 8.6639 25 6 2.1640 3.3855 5.6350 26 6 1.2947 2.4417 4.7981 27 1 -0.3633 0.4343 0.9314 28 1 -0.3633 0.5894 -0.8418 29 1 -0.3633 -1.0238 -0.0895 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4292 1.7067 -2.1061 33 1 2.8566 4.2598 1.3041 34 1 1.5517 4.2606 1.8956 35 1 0.2164 4.4281 3.0644 36 1 1.9108 6.1211 3.5517 37 1 3.1823 4.8757 3.6047 38 1 0.7679 5.0178 5.4673 39 1 2.5172 5.5458 7.1910 40 1 3.7211 5.6599 5.8849 41 1 1.5519 7.3525 5.2468 42 1 1.2620 10.6756 5.2690 43 1 1.9693 3.2164 6.6940 44 1 3.2161 3.1947 5.4231 45 1 0.2478 2.5679 5.0745 46 1 1.5974 1.4097 4.9746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206930937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 26.077153 kcal Electronic energy + Delta-G solvation = -27571.759969 eV Core-core repulsion = 23716.690138 eV Total energy + Delta-G solvation = -3855.069831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92490 -39.77171 -37.68429 -36.55894 -35.13099 -34.31894 -32.88366 -31.55589 -30.34270 -29.56925 -29.33082 -26.76141 -24.28111 -23.83904 -23.21632 -22.56775 -21.28673 -21.03560 -19.95788 -19.03544 -17.59924 -17.11554 -16.59245 -15.80550 -15.61127 -15.18591 -14.83260 -14.69523 -14.57118 -14.26261 -14.10218 -13.73953 -13.66022 -13.41053 -13.31207 -12.98789 -12.95390 -12.58846 -12.49598 -12.32771 -11.94504 -11.79274 -11.67494 -11.56496 -11.12975 -10.97914 -10.97326 -10.80833 -10.42599 -10.32134 -10.29316 -10.03874 -9.91996 -9.63218 -8.88032 -8.83172 -8.73741 -8.39587 -6.89620 -5.74926 -3.02994 1.19423 1.88142 2.20526 2.49647 3.05519 3.11959 3.45584 3.50018 3.50881 4.29057 4.33518 4.57840 4.60462 4.62477 4.88384 4.89651 4.96239 5.01416 5.08043 5.17764 5.20243 5.28313 5.37694 5.44413 5.52758 5.57884 5.64655 5.67622 5.68507 5.81637 5.94930 5.97129 6.11607 6.17821 6.19245 6.29172 6.42307 6.47806 6.53026 6.64346 6.75895 6.82000 6.93358 7.28569 7.71603 7.98434 8.44464 9.55563 10.13700 10.48411 11.47956 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002868 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.198043 B = 9761.078143 C =11503.184430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.402 5.402 4 C 0.029 3.971 5 C -0.120 4.120 6 Cl -0.047 7.047 7 C -0.137 4.137 8 C -0.029 4.029 9 C 0.591 3.409 10 O -0.552 6.552 11 N -0.591 5.591 12 C 0.072 3.928 13 C -0.126 4.126 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.127 4.127 26 C 0.116 3.884 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -20.775 -14.268 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.075 5.075 4 C -0.108 4.108 5 C -0.153 4.153 6 Cl -0.019 7.019 7 C -0.163 4.163 8 C -0.143 4.143 9 C 0.379 3.621 10 O -0.432 6.432 11 N -0.322 5.322 12 C -0.050 4.050 13 C -0.164 4.164 14 C -0.113 4.113 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.165 4.165 26 C -0.006 4.006 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.194 0.806 33 H 0.186 0.814 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.803 -21.558 -14.016 25.777 hybrid contribution 0.303 1.221 0.149 1.267 sum -1.499 -20.337 -13.866 24.660 Atomic orbital electron populations 1.22116 0.93856 1.03236 1.03164 1.22154 0.95985 0.79015 1.05600 1.43987 1.46563 1.11716 1.05246 1.21686 1.04996 0.91714 0.92387 1.19960 1.11952 0.91469 0.91917 1.98341 1.87226 1.50357 1.65938 1.21587 1.04391 0.96893 0.93448 1.20015 1.13850 0.91858 0.88557 1.16887 0.76814 0.84998 0.83353 1.90763 1.54625 1.18156 1.79649 1.47824 1.66944 1.09299 1.08176 1.22623 1.00971 0.79652 1.01742 1.21860 0.99647 1.00231 0.94703 1.21305 1.00974 0.93878 0.95098 1.20665 0.95486 0.85232 0.95552 1.42362 1.44315 0.99667 1.51248 1.19181 1.13970 0.86106 1.17747 0.91350 1.24715 0.99131 0.97244 0.99863 1.69638 1.31713 1.19090 1.37853 0.86280 0.78847 0.81935 0.79203 1.21298 1.21704 1.21344 1.21930 1.00116 0.94835 0.99636 1.21669 1.00069 1.00261 0.78568 0.91755 0.91905 0.90384 0.88817 0.87125 0.80641 0.81411 0.87024 0.91092 0.89083 0.91676 0.90944 0.96419 0.96400 0.78253 0.93492 0.90475 0.91490 0.91253 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.09 0.71 6.41 -4.04 -0.03 0.69 16 3 N -0.40 -4.00 2.76 -112.83 -0.31 -4.32 16 4 C 0.03 0.26 11.35 -16.84 -0.19 0.07 16 5 C -0.12 -1.30 6.66 -39.93 -0.27 -1.57 16 6 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.02 16 7 C -0.14 -1.62 8.57 -39.09 -0.33 -1.95 16 8 C -0.03 -0.35 6.48 -81.98 -0.53 -0.88 16 9 C 0.59 7.93 7.51 -12.86 -0.10 7.83 16 10 O -0.55 -8.39 14.60 5.20 0.08 -8.32 16 11 N -0.59 -7.42 2.98 -174.57 -0.52 -7.94 16 12 C 0.07 0.87 5.78 -3.93 -0.02 0.85 16 13 C -0.13 -1.81 5.02 -26.83 -0.13 -1.95 16 14 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 15 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 16 N -0.73 -18.09 5.32 -59.91 -0.32 -18.41 16 17 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.13 -1.60 5.36 -26.61 -0.14 -1.74 16 26 C 0.12 1.38 6.42 -3.71 -0.02 1.36 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.11 1.04 6.55 -51.93 -0.34 0.70 16 32 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.17 1.95 5.87 -52.49 -0.31 1.64 16 34 H 0.11 1.28 3.16 -51.93 -0.16 1.12 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.38 9.83 6.84 -40.82 -0.28 9.55 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.10 7.05 -51.93 -0.37 0.73 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -32.12 380.50 -9.89 -42.00 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.87 Total: 7.00 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.86 Total: -3.91 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.43 Total: -57.87 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.12 -9.89 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206930937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.081 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds