Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.46809 * 2 1 4 4 C 1.35631 * 125.67438 * 262.47053 * 3 2 1 5 5 C 1.35520 * 108.85193 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.07598 * 180.02562 * 5 4 3 7 7 C 1.39890 * 107.85326 * 0.02562 * 5 4 3 8 8 C 1.37637 * 125.67946 * 82.43266 * 3 2 1 9 9 C 1.46672 * 126.22013 * 0.03140 * 8 3 2 10 10 O 1.21692 * 120.00071 * 26.76969 * 9 8 3 11 11 N 1.34776 * 119.99963 * 206.76401 * 9 8 3 12 12 C 1.46933 * 120.63129 * 6.78972 * 11 9 8 13 13 C 1.52761 * 109.00856 * 233.58624 * 12 11 9 14 14 C 1.53039 * 109.38324 * 305.58616 * 13 12 11 15 15 C 1.52998 * 109.46326 * 181.26287 * 14 13 12 16 16 N 1.46501 * 109.47044 * 64.93169 * 15 14 13 17 17 C 1.36937 * 120.00195 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99646 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00296 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47165 * 60.00666 * 21 19 17 23 23 H 1.48505 * 109.47245 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47443 * 300.00216 * 21 19 17 25 25 C 1.53039 * 109.53589 * 61.24072 * 14 13 12 26 26 C 1.46923 * 120.63044 * 187.07159 * 11 9 8 27 27 H 1.09003 * 109.47130 * 294.99993 * 1 2 3 28 28 H 1.08993 * 109.47263 * 55.00239 * 1 2 3 29 29 H 1.08998 * 109.46710 * 175.00350 * 1 2 3 30 30 H 1.08998 * 109.46993 * 240.00072 * 2 1 3 31 31 H 1.08997 * 109.47230 * 119.99648 * 2 1 3 32 32 H 1.07996 * 125.57655 * 359.96924 * 4 3 2 33 33 H 1.07994 * 126.45175 * 179.73751 * 7 5 4 34 34 H 1.09001 * 109.58654 * 353.41913 * 12 11 9 35 35 H 1.08998 * 109.58656 * 113.84117 * 12 11 9 36 36 H 1.08999 * 109.55918 * 185.55309 * 13 12 11 37 37 H 1.08996 * 109.36244 * 65.49615 * 13 12 11 38 38 H 1.09004 * 109.45880 * 301.22509 * 14 13 12 39 39 H 1.08997 * 109.47475 * 184.93181 * 15 14 13 40 40 H 1.09004 * 109.46786 * 304.93274 * 15 14 13 41 41 H 0.97003 * 120.00182 * 0.02562 * 16 15 14 42 42 H 0.97003 * 120.00461 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.49590 * 178.68105 * 25 14 13 44 44 H 1.09002 * 109.49938 * 58.58954 * 25 14 13 45 45 H 1.09001 * 109.58403 * 246.15287 * 26 11 9 46 46 H 1.08995 * 109.58524 * 6.43640 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4181 2.0788 -1.0923 5 6 2.8014 3.3192 -0.7035 6 17 3.3914 4.5792 -1.7418 7 6 2.6372 3.4039 0.6831 8 6 2.1471 2.1872 1.1083 9 6 1.8227 1.8185 2.4904 10 8 1.8704 0.6528 2.8363 11 7 1.4720 2.7708 3.3772 12 6 1.2656 4.1591 2.9425 13 6 2.1300 5.0824 3.7993 14 6 1.8258 4.8349 5.2786 15 6 2.6676 5.7807 6.1373 16 7 2.2600 7.1646 5.8826 17 6 2.8786 8.1931 6.5421 18 1 3.6672 7.9839 7.2497 19 6 2.4927 9.5043 6.3004 20 7 1.5319 9.7593 5.4377 21 14 3.3360 10.9071 7.2006 22 1 4.7871 10.8963 6.8851 23 1 2.7448 12.1990 6.7685 24 1 3.1463 10.7413 8.6639 25 6 2.1640 3.3855 5.6350 26 6 1.2947 2.4417 4.7981 27 1 -0.3633 0.4343 0.9314 28 1 -0.3633 0.5894 -0.8418 29 1 -0.3633 -1.0238 -0.0895 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4292 1.7067 -2.1061 33 1 2.8566 4.2598 1.3041 34 1 1.5517 4.2606 1.8956 35 1 0.2164 4.4281 3.0644 36 1 1.9108 6.1211 3.5517 37 1 3.1823 4.8757 3.6047 38 1 0.7679 5.0178 5.4673 39 1 2.5172 5.5458 7.1910 40 1 3.7211 5.6599 5.8849 41 1 1.5519 7.3525 5.2468 42 1 1.2620 10.6756 5.2690 43 1 1.9693 3.2164 6.6940 44 1 3.2161 3.1947 5.4231 45 1 0.2478 2.5679 5.0745 46 1 1.5974 1.4097 4.9746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206930937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = 8.280457 kcal Electronic energy + Delta-G solvation = -27572.531691 eV Core-core repulsion = 23716.690138 eV Total energy + Delta-G solvation = -3855.841553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.75754 -40.79209 -38.86699 -37.37864 -36.63204 -35.20765 -34.37805 -32.75084 -32.02236 -30.35605 -30.20259 -28.22285 -25.78244 -24.68915 -24.28725 -23.92714 -22.37361 -22.08175 -21.01822 -20.03145 -19.11088 -18.45135 -17.63919 -16.79056 -16.62243 -16.48006 -15.99466 -15.67280 -15.59646 -15.41592 -15.38381 -15.21763 -14.93161 -14.37976 -14.29699 -14.18427 -13.95196 -13.71959 -13.64230 -13.23960 -13.07643 -12.97435 -12.86543 -12.70731 -12.38486 -12.23841 -12.23176 -12.12969 -11.94103 -11.82454 -11.67317 -11.46250 -11.32382 -11.00012 -10.88195 -9.82082 -9.65664 -9.22992 -8.95750 -7.92673 -5.20453 0.31596 1.10798 1.39731 1.48447 1.50920 1.57022 1.62498 2.08245 2.25709 2.57906 3.37549 3.40621 3.74792 3.76731 3.80238 3.90278 3.95588 4.05568 4.10472 4.15442 4.30067 4.35553 4.37516 4.38948 4.48986 4.58751 4.66965 4.74190 4.78442 4.82778 4.85967 4.90430 4.96752 5.06860 5.08736 5.13510 5.17795 5.22783 5.38262 5.48669 5.54742 5.55717 5.71675 6.04730 6.26851 6.30070 6.97170 7.36826 8.13449 8.37484 9.30441 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002868 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.198043 B = 9761.078143 C =11503.184430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 N -0.400 5.400 4 C 0.051 3.949 5 C -0.141 4.141 6 Cl -0.050 7.050 7 C -0.143 4.143 8 C -0.052 4.052 9 C 0.589 3.411 10 O -0.574 6.574 11 N -0.592 5.592 12 C 0.082 3.918 13 C -0.118 4.118 14 C -0.084 4.084 15 C 0.157 3.843 16 N -0.742 5.742 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.116 4.116 26 C 0.118 3.882 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.213 0.787 33 H 0.162 0.838 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -22.206 -15.192 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.030 4.030 3 N -0.073 5.073 4 C -0.086 4.086 5 C -0.173 4.173 6 Cl -0.021 7.021 7 C -0.169 4.169 8 C -0.166 4.166 9 C 0.379 3.621 10 O -0.456 6.456 11 N -0.323 5.323 12 C -0.039 4.039 13 C -0.157 4.157 14 C -0.103 4.103 15 C 0.031 3.969 16 N -0.385 5.385 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.154 4.154 26 C -0.003 4.003 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.230 0.770 33 H 0.179 0.821 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.686 -23.025 -14.913 27.484 hybrid contribution 0.303 1.596 0.413 1.677 sum -1.382 -21.429 -14.500 25.910 Atomic orbital electron populations 1.22074 0.93332 1.04400 1.01931 1.22350 0.96368 0.77854 1.06440 1.44238 1.45939 1.12344 1.04802 1.22239 1.02200 0.90729 0.93435 1.20071 1.13294 0.92376 0.91588 1.98338 1.87335 1.50653 1.65785 1.21590 1.04473 0.96719 0.94145 1.19863 1.15526 0.92602 0.88619 1.17087 0.76306 0.84701 0.83972 1.90745 1.55724 1.18941 1.80170 1.47864 1.66752 1.09190 1.08464 1.22510 1.00695 0.79018 1.01685 1.21719 0.99846 0.99386 0.94699 1.21191 0.99870 0.94503 0.94698 1.20811 0.95931 0.83744 0.96417 1.42545 1.43954 1.01210 1.50792 1.19570 1.13715 0.87154 1.17413 0.91061 1.25501 1.00210 0.99654 1.01138 1.69788 1.33288 1.19143 1.39499 0.85264 0.77940 0.78629 0.78241 1.20577 1.22066 1.20523 1.21837 1.00022 0.92878 1.00711 1.21687 1.00620 0.99913 0.78100 0.94456 0.91219 0.88367 0.85219 0.89018 0.77013 0.82088 0.86196 0.90473 0.91486 0.92147 0.91185 0.96294 0.96781 0.79124 0.93992 0.89013 0.91913 0.89947 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.24 71.99 0.74 -1.19 16 2 C 0.09 1.18 6.41 86.38 0.55 1.73 16 3 N -0.40 -7.24 2.76 -510.87 -1.41 -8.65 16 4 C 0.05 0.80 11.35 83.48 0.95 1.75 16 5 C -0.14 -2.87 6.66 22.04 0.15 -2.72 16 6 Cl -0.05 -1.01 29.30 -2.72 -0.08 -1.09 16 7 C -0.14 -3.30 8.57 22.59 0.19 -3.11 16 8 C -0.05 -1.22 6.48 40.35 0.26 -0.96 16 9 C 0.59 15.60 7.51 86.45 0.65 16.25 16 10 O -0.57 -17.31 14.60 -4.32 -0.06 -17.37 16 11 N -0.59 -14.56 2.98 -824.45 -2.46 -17.02 16 12 C 0.08 1.99 5.78 86.22 0.50 2.49 16 13 C -0.12 -3.45 5.02 30.53 0.15 -3.30 16 14 C -0.08 -2.53 2.19 -10.77 -0.02 -2.55 16 15 C 0.16 6.18 5.65 86.38 0.49 6.67 16 16 N -0.74 -37.22 5.32 -343.46 -1.83 -39.04 16 17 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 20 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 21 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.12 -2.81 5.36 30.67 0.16 -2.64 16 26 C 0.12 2.70 6.42 86.36 0.55 3.25 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.13 0.77 8.11 -2.39 -0.02 0.75 16 31 H 0.09 1.62 6.55 -2.39 -0.02 1.60 16 32 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.16 3.81 5.87 -2.91 -0.02 3.79 16 34 H 0.12 2.76 3.16 -2.39 -0.01 2.75 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.30 7.15 -2.39 -0.02 2.28 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.38 19.77 6.84 -92.71 -0.63 19.14 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 2.11 7.05 -2.39 -0.02 2.09 16 Total: -1.00 -69.27 380.50 3.47 -65.80 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.36 Total: 28.52 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.63 Total: -1.01 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.41 Total: -123.10 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.06 Total: -17.37 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -69.27 3.47 -65.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206930937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.085 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds