Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.65020 * 2 1 4 4 C 1.54931 * 110.87863 * 236.73870 * 2 1 3 5 5 N 1.48537 * 103.22908 * 204.15845 * 4 2 1 6 6 C 1.46902 * 110.99940 * 159.72214 * 5 4 2 7 7 C 1.50697 * 109.47354 * 59.24123 * 6 5 4 8 8 O 1.21292 * 120.00157 * 6.13306 * 7 6 5 9 9 N 1.34783 * 119.99957 * 186.13847 * 7 6 5 10 10 C 1.37102 * 119.99828 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.38945 * 119.99993 * 180.27518 * 10 9 7 13 13 N 1.31407 * 120.00103 * 179.72890 * 12 10 9 14 14 Si 1.86801 * 119.99747 * 359.72243 * 12 10 9 15 15 H 1.48494 * 109.47141 * 90.00487 * 14 12 10 16 16 H 1.48505 * 109.46869 * 210.00313 * 14 12 10 17 17 H 1.48499 * 109.47293 * 330.00016 * 14 12 10 18 18 C 1.47902 * 105.81964 * 39.20723 * 5 4 2 19 19 C 1.53991 * 107.05702 * 334.67101 * 18 5 4 20 20 H 1.09005 * 110.31075 * 120.14400 * 19 18 5 21 21 N 1.46499 * 110.30877 * 242.30989 * 19 18 5 22 22 C 1.34780 * 119.99972 * 273.55200 * 21 19 18 23 23 O 1.21580 * 119.99860 * 359.97438 * 22 21 19 24 24 C 1.47619 * 119.99826 * 180.02562 * 22 21 19 25 25 N 1.31862 * 126.46159 * 0.02562 * 24 22 21 26 26 N 1.28472 * 110.15788 * 180.02562 * 25 24 22 27 27 H 0.96994 * 124.93687 * 179.97438 * 26 25 24 28 28 C 1.35733 * 110.12845 * 0.02562 * 26 25 24 29 29 C 1.35539 * 107.12060 * 359.72491 * 28 26 25 30 30 F 1.35100 * 127.24633 * 180.25935 * 29 28 26 31 31 H 1.09000 * 109.47241 * 296.85190 * 1 2 3 32 32 H 1.09003 * 109.46921 * 56.84588 * 1 2 3 33 33 H 1.09001 * 109.47383 * 176.85246 * 1 2 3 34 34 H 1.08995 * 110.67042 * 85.72187 * 4 2 1 35 35 H 1.09002 * 110.66871 * 322.59046 * 4 2 1 36 36 H 1.09003 * 109.46711 * 299.24409 * 6 5 4 37 37 H 1.08995 * 109.47222 * 179.24675 * 6 5 4 38 38 H 0.96991 * 119.99799 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99927 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.91499 * 94.02437 * 18 5 4 41 41 H 1.08997 * 109.91367 * 215.31511 * 18 5 4 42 42 H 0.96999 * 120.00125 * 93.54301 * 21 19 18 43 43 H 1.08001 * 126.43865 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0822 -0.7939 -1.2104 5 7 3.4360 -1.2051 -0.7583 6 6 3.9294 -2.3449 -1.5427 7 6 3.9846 -1.9656 -3.0001 8 8 3.7536 -0.8241 -3.3388 9 7 4.2905 -2.8948 -3.9272 10 6 4.3402 -2.5498 -5.2531 11 1 4.1338 -1.5335 -5.5548 12 6 4.6500 -3.5090 -6.2095 13 7 4.6925 -3.1795 -7.4808 14 14 5.0064 -5.2669 -5.6877 15 1 3.7421 -6.0457 -5.6759 16 1 5.9590 -5.8840 -6.6455 17 1 5.6016 -5.2685 -4.3272 18 6 3.2921 -1.5662 0.6687 19 6 2.0771 -0.7907 1.2106 20 1 1.3218 -1.4829 1.5830 21 7 2.4931 0.1288 2.2725 22 6 2.5739 -0.3048 3.5461 23 8 2.3010 -1.4589 3.8137 24 6 2.9926 0.6219 4.6161 25 7 3.3147 1.8924 4.4709 26 7 3.6310 2.4016 5.6072 27 1 3.9031 3.3220 5.7469 28 6 3.5301 1.4641 6.5835 29 6 3.1196 0.3153 5.9928 30 9 2.8840 -0.8729 6.5909 31 1 -0.3634 0.4642 0.9169 32 1 -0.3633 0.5620 -0.8604 33 1 -0.3634 -1.0261 -0.0564 34 1 2.1482 -0.1556 -2.0914 35 1 1.4624 -1.6675 -1.4126 36 1 3.2571 -3.1932 -1.4132 37 1 4.9276 -2.6169 -1.1999 38 1 4.4755 -3.8076 -3.6563 39 1 4.9091 -3.8491 -8.1484 40 1 3.1213 -2.6385 0.7650 41 1 4.1898 -1.2799 1.2165 42 1 2.7106 1.0497 2.0590 43 1 3.7343 1.6076 7.6343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208517836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -20.193113 kcal Electronic energy + Delta-G solvation = -28887.132319 eV Core-core repulsion = 24498.179340 eV Total energy + Delta-G solvation = -4388.952979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.99951 -43.16284 -40.19931 -38.90392 -37.69965 -34.62011 -33.85278 -32.87470 -32.16257 -31.63506 -31.06121 -29.05033 -27.27144 -25.63645 -24.66923 -23.49356 -22.34945 -21.39635 -20.49671 -20.17271 -19.36213 -19.28762 -18.26463 -17.44954 -16.90736 -16.75198 -16.32902 -15.93277 -15.50658 -15.34165 -14.96280 -14.86093 -14.82178 -14.66177 -14.44112 -13.89788 -13.41264 -13.17449 -13.12833 -12.98439 -12.66158 -12.53463 -12.33557 -11.93784 -11.80255 -11.57336 -11.49745 -11.31953 -11.08442 -10.79567 -10.63586 -10.55718 -10.34022 -10.12173 -9.96348 -9.52958 -9.47260 -9.23804 -8.51678 -8.18036 -8.03383 -6.29928 -3.81148 0.96301 1.33150 2.10951 2.80081 2.99849 3.04965 3.08677 3.16819 3.69788 3.75418 4.02589 4.07277 4.12114 4.30272 4.45725 4.59699 4.62631 4.79651 4.84333 5.06208 5.20287 5.24890 5.39851 5.44238 5.58427 5.70668 5.73227 5.80259 5.82614 5.83322 5.89223 5.96762 6.05199 6.17985 6.22217 6.40675 6.49360 6.99916 7.11192 7.15306 7.35075 7.59815 7.94686 8.15633 8.61503 8.96420 9.43877 9.84600 10.83118 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.002125 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.316804 B =13170.246593 C =13532.391816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.044 3.956 5 N -0.492 5.492 6 C 0.033 3.967 7 C 0.453 3.547 8 O -0.560 6.560 9 N -0.591 5.591 10 C -0.303 4.303 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.269 1.269 18 C 0.024 3.976 19 C 0.140 3.860 20 H 0.098 0.902 21 N -0.700 5.700 22 C 0.601 3.399 23 O -0.523 6.523 24 C -0.028 4.028 25 N -0.230 5.230 26 N -0.368 5.368 27 H 0.457 0.543 28 C -0.038 4.038 29 C 0.038 3.962 30 F -0.099 7.099 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.409 0.591 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 9.285 28.966 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.084 4.084 5 N -0.216 5.216 6 C -0.099 4.099 7 C 0.239 3.761 8 O -0.442 6.442 9 N -0.230 5.230 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.705 3.295 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.105 4.105 19 C 0.035 3.965 20 H 0.116 0.884 21 N -0.352 5.352 22 C 0.384 3.616 23 O -0.397 6.397 24 C -0.190 4.190 25 N -0.067 5.067 26 N -0.084 5.084 27 H 0.304 0.696 28 C -0.183 4.183 29 C 0.008 3.992 30 F -0.078 7.078 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.245 0.755 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.297 10.300 27.813 29.969 hybrid contribution 0.118 -2.112 1.146 2.406 sum -4.178 8.188 28.960 30.384 Atomic orbital electron populations 1.21768 0.93971 1.02260 1.02007 1.22404 0.95875 1.00267 0.93525 0.89181 1.23427 0.87714 0.99046 0.98208 1.64567 1.24072 1.32498 1.00443 1.22134 1.01491 0.92257 0.93990 1.19597 0.84059 0.86338 0.86142 1.90521 1.52867 1.19543 1.81298 1.42217 1.63479 1.09933 1.07408 1.19419 1.44967 0.99546 0.79277 0.86253 1.25035 0.97675 0.98403 0.95078 1.69620 1.47919 1.34690 0.99934 0.86682 0.79088 0.84958 0.78750 1.19657 1.20179 1.19443 1.23364 0.98420 0.98429 0.90331 1.22017 0.96190 0.91635 0.86655 0.88403 1.45902 1.68106 1.15190 1.05989 1.16732 0.77595 0.85819 0.81432 1.90861 1.49197 1.17178 1.82436 1.22215 1.10467 0.92165 0.94197 1.73650 1.15148 1.09224 1.08661 1.43041 1.48884 1.13088 1.03433 0.69601 1.22707 1.09205 0.89066 0.97292 1.17190 1.08483 0.83501 0.90025 1.91554 1.92408 1.41472 1.82318 0.92564 0.91758 0.92413 0.86991 0.93905 0.93222 0.88988 0.79704 0.91636 0.92995 0.89973 0.75509 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.17 37.16 0.34 -1.09 16 2 C -0.10 -1.19 3.36 -88.76 -0.30 -1.49 16 3 H 0.09 1.03 7.74 -51.93 -0.40 0.63 16 4 C 0.04 0.68 5.04 -1.90 -0.01 0.67 16 5 N -0.49 -8.01 5.11 -231.90 -1.18 -9.20 16 6 C 0.03 0.57 5.30 -4.98 -0.03 0.55 16 7 C 0.45 10.30 7.42 -10.98 -0.08 10.21 16 8 O -0.56 -14.71 13.87 5.55 0.08 -14.63 16 9 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 10 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 14 Si 0.88 19.54 27.73 -169.99 -4.71 14.82 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 18 C 0.02 0.33 6.49 -2.76 -0.02 0.31 16 19 C 0.14 1.68 2.87 -66.57 -0.19 1.49 16 20 H 0.10 1.23 7.36 -51.93 -0.38 0.85 16 21 N -0.70 -7.71 5.02 -53.50 -0.27 -7.98 16 22 C 0.60 7.61 7.81 -12.43 -0.10 7.51 16 23 O -0.52 -8.33 16.37 5.30 0.09 -8.24 16 24 C -0.03 -0.30 7.13 -82.74 -0.59 -0.89 16 25 N -0.23 -1.85 11.91 33.43 0.40 -1.45 16 26 N -0.37 -1.58 6.87 30.64 0.21 -1.37 16 27 H 0.46 0.02 8.96 -190.44 -1.71 -1.68 16 28 C -0.04 -0.18 12.06 -16.79 -0.20 -0.39 16 29 C 0.04 0.36 8.03 -39.26 -0.32 0.05 16 30 F -0.10 -1.15 17.03 2.25 0.04 -1.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.11 2.09 6.43 -51.93 -0.33 1.75 16 35 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 36 H 0.05 0.77 7.98 -51.93 -0.41 0.35 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.37 7.85 5.77 -40.82 -0.24 7.62 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.05 0.69 7.68 -51.93 -0.40 0.30 16 41 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 42 H 0.41 3.89 8.07 -40.82 -0.33 3.56 16 43 H 0.20 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -36.44 366.12 -7.55 -43.99 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.69 Total: 9.65 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -1.74 Total: 9.24 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.13 Total: -59.23 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.16 Total: -22.87 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.44 -7.55 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208517836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.795 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds