Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.65020 * 2 1 4 4 C 1.54931 * 110.87863 * 236.73870 * 2 1 3 5 5 N 1.48537 * 103.22908 * 204.15845 * 4 2 1 6 6 C 1.46902 * 110.99940 * 159.72214 * 5 4 2 7 7 C 1.50697 * 109.47354 * 59.24123 * 6 5 4 8 8 O 1.21292 * 120.00157 * 6.13306 * 7 6 5 9 9 N 1.34783 * 119.99957 * 186.13847 * 7 6 5 10 10 C 1.37102 * 119.99828 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.38945 * 119.99993 * 180.27518 * 10 9 7 13 13 N 1.31407 * 120.00103 * 179.72890 * 12 10 9 14 14 Si 1.86801 * 119.99747 * 359.72243 * 12 10 9 15 15 H 1.48494 * 109.47141 * 90.00487 * 14 12 10 16 16 H 1.48505 * 109.46869 * 210.00313 * 14 12 10 17 17 H 1.48499 * 109.47293 * 330.00016 * 14 12 10 18 18 C 1.47902 * 105.81964 * 39.20723 * 5 4 2 19 19 C 1.53991 * 107.05702 * 334.67101 * 18 5 4 20 20 H 1.09005 * 110.31075 * 120.14400 * 19 18 5 21 21 N 1.46499 * 110.30877 * 242.30989 * 19 18 5 22 22 C 1.34780 * 119.99972 * 273.55200 * 21 19 18 23 23 O 1.21580 * 119.99860 * 359.97438 * 22 21 19 24 24 C 1.47619 * 119.99826 * 180.02562 * 22 21 19 25 25 N 1.31862 * 126.46159 * 0.02562 * 24 22 21 26 26 N 1.28472 * 110.15788 * 180.02562 * 25 24 22 27 27 H 0.96994 * 124.93687 * 179.97438 * 26 25 24 28 28 C 1.35733 * 110.12845 * 0.02562 * 26 25 24 29 29 C 1.35539 * 107.12060 * 359.72491 * 28 26 25 30 30 F 1.35100 * 127.24633 * 180.25935 * 29 28 26 31 31 H 1.09000 * 109.47241 * 296.85190 * 1 2 3 32 32 H 1.09003 * 109.46921 * 56.84588 * 1 2 3 33 33 H 1.09001 * 109.47383 * 176.85246 * 1 2 3 34 34 H 1.08995 * 110.67042 * 85.72187 * 4 2 1 35 35 H 1.09002 * 110.66871 * 322.59046 * 4 2 1 36 36 H 1.09003 * 109.46711 * 299.24409 * 6 5 4 37 37 H 1.08995 * 109.47222 * 179.24675 * 6 5 4 38 38 H 0.96991 * 119.99799 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99927 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.91499 * 94.02437 * 18 5 4 41 41 H 1.08997 * 109.91367 * 215.31511 * 18 5 4 42 42 H 0.96999 * 120.00125 * 93.54301 * 21 19 18 43 43 H 1.08001 * 126.43865 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0822 -0.7939 -1.2104 5 7 3.4360 -1.2051 -0.7583 6 6 3.9294 -2.3449 -1.5427 7 6 3.9846 -1.9656 -3.0001 8 8 3.7536 -0.8241 -3.3388 9 7 4.2905 -2.8948 -3.9272 10 6 4.3402 -2.5498 -5.2531 11 1 4.1338 -1.5335 -5.5548 12 6 4.6500 -3.5090 -6.2095 13 7 4.6925 -3.1795 -7.4808 14 14 5.0064 -5.2669 -5.6877 15 1 3.7421 -6.0457 -5.6759 16 1 5.9590 -5.8840 -6.6455 17 1 5.6016 -5.2685 -4.3272 18 6 3.2921 -1.5662 0.6687 19 6 2.0771 -0.7907 1.2106 20 1 1.3218 -1.4829 1.5830 21 7 2.4931 0.1288 2.2725 22 6 2.5739 -0.3048 3.5461 23 8 2.3010 -1.4589 3.8137 24 6 2.9926 0.6219 4.6161 25 7 3.3147 1.8924 4.4709 26 7 3.6310 2.4016 5.6072 27 1 3.9031 3.3220 5.7469 28 6 3.5301 1.4641 6.5835 29 6 3.1196 0.3153 5.9928 30 9 2.8840 -0.8729 6.5909 31 1 -0.3634 0.4642 0.9169 32 1 -0.3633 0.5620 -0.8604 33 1 -0.3634 -1.0261 -0.0564 34 1 2.1482 -0.1556 -2.0914 35 1 1.4624 -1.6675 -1.4126 36 1 3.2571 -3.1932 -1.4132 37 1 4.9276 -2.6169 -1.1999 38 1 4.4755 -3.8076 -3.6563 39 1 4.9091 -3.8491 -8.1484 40 1 3.1213 -2.6385 0.7650 41 1 4.1898 -1.2799 1.2165 42 1 2.7106 1.0497 2.0590 43 1 3.7343 1.6076 7.6343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208517836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = -51.906806 kcal Electronic energy + Delta-G solvation = -28888.507528 eV Core-core repulsion = 24498.179340 eV Total energy + Delta-G solvation = -4390.328188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.70706 -43.71244 -41.30580 -40.35520 -39.14107 -36.12353 -35.48600 -33.94855 -33.67028 -32.82544 -31.60714 -30.24970 -28.59490 -26.95118 -25.95058 -24.67811 -22.96825 -22.47286 -21.52060 -21.27519 -21.05311 -20.19875 -19.85459 -18.25920 -18.00440 -17.51549 -17.44356 -16.96890 -16.91382 -16.39516 -16.22884 -16.05418 -15.87561 -15.76015 -15.37691 -15.14227 -15.05195 -14.70659 -14.40990 -14.13326 -13.99293 -13.66000 -13.51045 -13.38897 -13.09490 -12.91584 -12.60235 -12.41982 -12.33578 -12.17209 -11.98631 -11.85881 -11.71440 -11.46315 -11.32940 -10.71827 -10.40917 -10.23989 -10.16906 -10.01347 -9.37547 -8.41192 -6.01492 0.27483 0.80219 1.30443 1.34577 1.43594 1.68972 1.93998 2.02474 2.12545 2.22442 2.62418 3.02198 3.14788 3.18055 3.45508 3.53730 3.61818 3.83851 3.95545 4.01335 4.12091 4.19133 4.31779 4.34922 4.42218 4.49297 4.51750 4.65423 4.78617 4.81532 4.92167 5.03786 5.18336 5.22282 5.27985 5.43791 5.52543 5.84563 5.88075 5.91629 6.00321 6.34281 6.59423 6.62172 6.88169 7.04547 7.39277 7.95502 8.76190 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.002125 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.316804 B =13170.246593 C =13532.391816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.094 0.906 4 C 0.043 3.957 5 N -0.509 5.509 6 C 0.042 3.958 7 C 0.453 3.547 8 O -0.602 6.602 9 N -0.592 5.592 10 C -0.324 4.324 11 H 0.058 0.942 12 C -0.015 4.015 13 N -0.933 5.933 14 Si 0.962 3.038 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.234 1.234 18 C 0.029 3.971 19 C 0.148 3.852 20 H 0.097 0.903 21 N -0.690 5.690 22 C 0.599 3.401 23 O -0.564 6.564 24 C -0.058 4.058 25 N -0.235 5.235 26 N -0.343 5.343 27 H 0.478 0.522 28 C 0.006 3.994 29 C -0.009 4.009 30 F -0.119 7.119 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.388 0.612 39 H 0.279 0.721 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.417 0.583 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 8.690 32.558 33.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.112 0.888 4 C -0.085 4.085 5 N -0.234 5.234 6 C -0.089 4.089 7 C 0.241 3.759 8 O -0.485 6.485 9 N -0.234 5.234 10 C -0.454 4.454 11 H 0.076 0.924 12 C -0.213 4.213 13 N -0.574 5.574 14 Si 0.782 3.218 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.157 1.157 18 C -0.100 4.100 19 C 0.042 3.958 20 H 0.115 0.885 21 N -0.342 5.342 22 C 0.385 3.615 23 O -0.440 6.440 24 C -0.218 4.218 25 N -0.074 5.074 26 N -0.063 5.063 27 H 0.329 0.671 28 C -0.140 4.140 29 C -0.039 4.039 30 F -0.098 7.098 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.254 0.746 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.822 9.765 31.421 33.124 hybrid contribution -0.018 -1.680 0.056 1.681 sum -3.840 8.085 31.476 32.724 Atomic orbital electron populations 1.21746 0.92404 1.02615 1.02817 1.22296 0.97030 0.99777 0.91622 0.88778 1.23298 0.87867 0.98910 0.98389 1.64514 1.24599 1.32541 1.01736 1.22083 1.03737 0.93401 0.89689 1.20688 0.81498 0.85442 0.88271 1.90516 1.53858 1.21546 1.82617 1.42046 1.64312 1.11128 1.05911 1.18992 1.46897 0.97552 0.81919 0.92376 1.26072 0.96510 1.04212 0.94548 1.69795 1.48885 1.37036 1.01665 0.85404 0.79524 0.76869 0.80001 1.18200 1.19975 1.15724 1.23349 0.99039 0.99204 0.88420 1.21866 0.95494 0.91666 0.86765 0.88519 1.45792 1.67568 1.15333 1.05475 1.17041 0.76785 0.85692 0.82012 1.90825 1.51150 1.18956 1.83114 1.21971 1.12698 0.92932 0.94211 1.73596 1.15402 1.08206 1.10186 1.43248 1.46588 1.13987 1.02442 0.67064 1.23322 1.05015 0.86861 0.98800 1.17655 1.11581 0.84383 0.90238 1.91488 1.92931 1.42909 1.82511 0.91095 0.91645 0.92250 0.90783 0.93823 0.90340 0.86612 0.77633 0.91167 0.92148 0.90105 0.74581 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.17 71.98 0.66 -1.97 16 2 C -0.09 -2.02 3.36 -9.59 -0.03 -2.05 16 3 H 0.09 2.09 7.74 -2.39 -0.02 2.07 16 4 C 0.04 1.35 5.04 86.65 0.44 1.79 16 5 N -0.51 -16.22 5.11 -887.58 -4.54 -20.75 16 6 C 0.04 1.40 5.30 85.56 0.45 1.85 16 7 C 0.45 20.81 7.42 87.66 0.65 21.46 16 8 O -0.60 -33.04 13.87 -3.07 -0.04 -33.09 16 9 N -0.59 -28.38 5.09 -306.98 -1.56 -29.94 16 10 C -0.32 -19.09 10.16 84.04 0.85 -18.24 16 11 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 12 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 13 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 14 Si 0.96 39.44 27.73 68.60 1.90 41.35 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.23 -8.20 6.52 99.48 0.65 -7.55 16 18 C 0.03 0.74 6.49 86.45 0.56 1.30 16 19 C 0.15 3.40 2.87 45.87 0.13 3.53 16 20 H 0.10 2.33 7.36 -2.38 -0.02 2.31 16 21 N -0.69 -14.64 5.02 -441.44 -2.22 -16.86 16 22 C 0.60 15.00 7.81 86.72 0.68 15.68 16 23 O -0.56 -18.11 16.37 -3.97 -0.06 -18.17 16 24 C -0.06 -1.17 7.13 42.45 0.30 -0.87 16 25 N -0.24 -3.30 11.91 -48.15 -0.57 -3.88 16 26 N -0.34 -1.75 6.87 -56.99 -0.39 -2.14 16 27 H 0.48 -1.94 8.96 -220.00 -1.97 -3.91 16 28 C 0.01 0.04 12.06 83.47 1.01 1.04 16 29 C -0.01 -0.16 8.03 22.48 0.18 0.02 16 30 F -0.12 -2.77 17.03 44.97 0.77 -2.01 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 34 H 0.07 2.90 6.43 -2.39 -0.02 2.89 16 35 H 0.04 1.33 7.89 -2.39 -0.02 1.31 16 36 H 0.08 2.18 7.98 -2.39 -0.02 2.17 16 37 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.39 15.61 5.77 -92.72 -0.53 15.07 16 39 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.06 1.48 7.68 -2.39 -0.02 1.47 16 41 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 42 H 0.42 7.50 8.07 -92.71 -0.75 6.75 16 43 H 0.25 -1.00 8.06 -2.91 -0.02 -1.02 16 Total: -1.00 -86.88 366.12 -2.28 -89.16 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -2.21 Total: 29.35 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.35 Total: 23.20 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -8.98 Total: -129.79 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.11 Total: -51.26 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.77 Total: -2.01 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.90 Total: 41.35 kcal Total: -86.88 -2.28 -89.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208517836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.253 kcal (2) G-P(sol) polarization free energy of solvation -86.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds