Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47089 * 240.00425 * 2 1 3 5 5 C 1.50697 * 109.47235 * 120.00206 * 2 1 3 6 6 N 1.31792 * 119.09108 * 179.97438 * 5 2 1 7 7 C 1.32498 * 120.96116 * 180.02562 * 6 5 2 8 8 C 1.50694 * 120.40965 * 180.02562 * 7 6 5 9 9 Cl 1.80306 * 109.46920 * 90.00381 * 8 7 6 10 10 C 1.38230 * 119.17343 * 359.72537 * 7 6 5 11 11 C 1.39377 * 118.35080 * 0.53719 * 10 7 6 12 12 O 1.35523 * 120.50929 * 179.73681 * 11 10 7 13 13 C 1.42897 * 116.99952 * 179.72477 * 12 11 10 14 14 H 1.09004 * 110.91562 * 327.54569 * 13 12 11 15 15 C 1.55448 * 111.11758 * 203.55666 * 13 12 11 16 16 C 1.54321 * 102.96961 * 206.46102 * 15 13 12 17 17 N 1.47026 * 107.26791 * 22.19024 * 16 15 13 18 18 C 1.36941 * 125.64206 * 181.07813 * 17 16 15 19 19 H 1.08004 * 119.99539 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00624 * 359.97438 * 18 17 16 21 21 N 1.31626 * 119.99751 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00379 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46885 * 59.99761 * 22 20 18 24 24 H 1.48501 * 109.47417 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47045 * 300.00177 * 22 20 18 26 26 C 1.47419 * 108.70576 * 1.06162 * 17 16 15 27 27 N 1.31767 * 119.09449 * 359.97438 * 5 2 1 28 28 H 1.09004 * 109.47149 * 299.99588 * 1 2 3 29 29 H 1.09006 * 109.47586 * 59.99753 * 1 2 3 30 30 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47621 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47005 * 300.00602 * 3 2 1 33 33 H 1.09004 * 109.46687 * 60.00129 * 3 2 1 34 34 H 1.09001 * 109.47063 * 299.99760 * 4 2 1 35 35 H 1.08996 * 109.47318 * 59.99953 * 4 2 1 36 36 H 1.09001 * 109.47407 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47257 * 210.00314 * 8 7 6 38 38 H 1.08998 * 109.47593 * 330.00156 * 8 7 6 39 39 H 1.08003 * 120.82220 * 180.26702 * 10 7 6 40 40 H 1.08998 * 110.70855 * 88.08906 * 15 13 12 41 41 H 1.08998 * 110.85957 * 324.90522 * 15 13 12 42 42 H 1.08998 * 109.88101 * 262.77542 * 16 15 13 43 43 H 1.08997 * 110.01327 * 141.67909 * 16 15 13 44 44 H 0.96995 * 120.00037 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.36926 * 94.70918 * 26 17 16 46 46 H 1.08995 * 110.36556 * 216.92202 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 3.3317 -0.8210 1.4209 7 6 3.8139 -1.4385 2.4893 8 6 5.3020 -1.5573 2.6950 9 17 5.8953 -0.1329 3.6278 10 6 2.9350 -1.9670 3.4161 11 6 1.5674 -1.8371 3.1805 12 8 0.6669 -2.3435 4.0575 13 6 -0.7156 -2.1625 3.7450 14 1 -0.8748 -1.2242 3.2134 15 6 -1.5933 -2.2330 5.0260 16 6 -2.9595 -2.7038 4.4843 17 7 -2.7123 -3.3725 3.1985 18 6 -3.6701 -3.9153 2.3842 19 1 -3.3851 -4.3867 1.4551 20 6 -5.0072 -3.8598 2.7526 21 7 -5.3545 -3.2859 3.8851 22 14 -6.3138 -4.5997 1.6414 23 1 -6.0501 -6.0505 1.4652 24 1 -7.6521 -4.4104 2.2567 25 1 -6.2780 -3.9259 0.3186 26 6 -1.2626 -3.3616 2.9310 27 7 1.1603 -1.2040 2.0862 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 5.5206 -2.4706 3.2483 38 1 5.8012 -1.5910 1.7266 39 1 3.2989 -2.4719 4.2988 40 1 -1.6799 -1.2499 5.4886 41 1 -1.1892 -2.9565 5.7340 42 1 -3.6150 -1.8457 4.3359 43 1 -3.4173 -3.4032 5.1839 44 1 -6.2889 -3.2467 4.1424 45 1 -0.8068 -4.2911 3.2721 46 1 -1.0742 -3.2155 1.8674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229822492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = 0.234012 kcal Electronic energy + Delta-G solvation = -27835.064889 eV Core-core repulsion = 23978.874416 eV Total energy + Delta-G solvation = -3856.190473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54965 -40.39886 -38.34603 -37.78163 -36.93932 -34.82157 -34.28376 -32.55911 -31.20342 -29.73191 -28.78864 -28.16961 -28.00794 -26.56796 -25.60899 -23.92720 -22.15413 -22.01091 -20.79194 -19.41250 -18.96092 -18.49434 -17.12227 -16.84477 -16.60483 -16.40953 -16.17212 -15.80623 -15.53965 -15.23468 -15.19131 -14.77899 -14.73756 -14.40884 -14.22222 -14.17208 -13.89866 -13.49212 -13.09321 -13.04854 -12.95858 -12.71276 -12.60040 -12.56723 -12.23703 -12.13357 -12.10230 -11.93278 -11.86498 -11.85695 -11.80477 -11.67031 -11.54533 -11.40758 -11.17744 -10.75125 -10.44401 -10.09704 -8.99790 -7.89842 -5.27488 -0.33456 -0.05512 1.34747 1.44748 1.48364 1.54522 1.66946 2.46558 2.62641 2.66747 2.77253 3.28809 3.36463 3.59514 3.69561 3.74807 3.88662 3.92915 4.00445 4.01971 4.09050 4.09915 4.34778 4.38799 4.48517 4.50772 4.61196 4.72524 4.75434 4.78410 4.82350 4.88518 4.89766 4.97767 4.99418 5.04685 5.15273 5.32535 5.37070 5.37494 5.46152 5.53701 5.65143 5.82327 6.05312 6.14632 6.99013 7.03398 7.67618 8.31519 9.20471 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.003014 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.291944 B = 9286.930303 C =10537.337668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.001 4.001 3 C -0.127 4.127 4 C -0.128 4.128 5 C 0.360 3.640 6 N -0.525 5.525 7 C 0.180 3.820 8 C 0.025 3.975 9 Cl -0.170 7.170 10 C -0.233 4.233 11 C 0.349 3.651 12 O -0.290 6.290 13 C 0.094 3.906 14 H 0.089 0.911 15 C -0.123 4.123 16 C 0.188 3.812 17 N -0.621 5.621 18 C -0.249 4.249 19 H 0.080 0.920 20 C -0.060 4.060 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.130 3.870 27 N -0.578 5.578 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.177 0.823 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.250 0.750 45 H 0.023 0.977 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.229 6.941 -5.021 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.003 4.003 3 C -0.185 4.185 4 C -0.186 4.186 5 C 0.092 3.908 6 N -0.244 5.244 7 C 0.035 3.965 8 C -0.037 4.037 9 Cl -0.144 7.144 10 C -0.256 4.256 11 C 0.163 3.837 12 O -0.193 6.193 13 C 0.037 3.963 14 H 0.107 0.893 15 C -0.161 4.161 16 C 0.063 3.937 17 N -0.348 5.348 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.253 4.253 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.004 3.996 27 N -0.307 5.307 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.194 0.806 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 22.733 7.291 -5.408 24.478 hybrid contribution -1.194 -0.875 0.585 1.591 sum 21.539 6.417 -4.822 22.986 Atomic orbital electron populations 1.21666 0.92964 1.01634 1.01961 1.19558 0.95890 0.95797 0.89081 1.21786 1.01927 0.92152 1.02594 1.21792 1.02025 0.99314 0.95429 1.23221 0.84265 0.89692 0.93578 1.68020 1.15301 1.18681 1.22389 1.21610 0.97140 0.89555 0.88184 1.23274 0.87005 0.91461 1.02007 1.98758 1.89018 1.49349 1.77246 1.21970 0.89738 1.08807 1.05125 1.20477 0.89287 0.87370 0.86611 1.86236 1.17004 1.72254 1.43802 1.23453 0.76116 0.99167 0.97612 0.89282 1.22960 0.94398 1.02980 0.95799 1.20936 0.91686 0.94884 0.86179 1.44567 1.00992 1.67674 1.21608 1.19365 0.86892 1.30495 1.00992 0.90212 1.25666 0.98990 1.01523 0.99122 1.70140 1.16276 1.49467 1.23827 0.85117 0.77765 0.78284 0.77938 1.20272 1.21680 1.20159 1.21802 0.84990 0.95399 0.97397 1.67989 1.41772 1.15816 1.05168 0.93716 0.90240 0.94109 0.91193 0.89449 0.93926 0.94049 0.89509 0.90961 0.83448 0.84753 0.80557 0.88959 0.89813 0.95997 0.96163 0.94065 0.95967 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 7.67 71.98 0.55 -2.62 16 2 C 0.00 -0.03 0.92 -52.93 -0.05 -0.08 16 3 C -0.13 -2.34 8.37 71.98 0.60 -1.74 16 4 C -0.13 -2.38 8.37 71.98 0.60 -1.78 16 5 C 0.36 9.69 6.25 138.76 0.87 10.55 16 6 N -0.52 -12.32 9.74 -176.22 -1.72 -14.04 16 7 C 0.18 3.61 6.19 42.45 0.26 3.87 16 8 C 0.03 0.30 6.98 71.23 0.50 0.80 16 9 Cl -0.17 -2.76 29.13 -2.72 -0.08 -2.84 16 10 C -0.23 -5.31 9.81 22.54 0.22 -5.09 16 11 C 0.35 10.58 7.52 84.82 0.64 11.21 16 12 O -0.29 -9.71 9.95 -88.26 -0.88 -10.59 16 13 C 0.09 3.57 3.25 32.09 0.10 3.67 16 14 H 0.09 3.54 7.20 -2.38 -0.02 3.52 16 15 C -0.12 -4.71 6.70 31.88 0.21 -4.49 16 16 C 0.19 9.43 5.38 86.73 0.47 9.90 16 17 N -0.62 -33.05 3.40 -692.01 -2.35 -35.40 16 18 C -0.25 -14.27 10.28 84.03 0.86 -13.41 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 21 N -0.95 -56.94 10.31 21.65 0.22 -56.72 16 22 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 C 0.13 5.79 6.96 86.85 0.60 6.40 16 27 N -0.58 -18.21 7.47 -300.69 -2.25 -20.45 16 28 H 0.04 1.27 8.04 -2.38 -0.02 1.25 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16 31 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 37 H 0.15 0.87 8.10 -2.39 -0.02 0.85 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.02 1.21 7.38 -2.39 -0.02 1.19 16 43 H 0.02 1.12 7.50 -2.39 -0.02 1.10 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.64 388.90 2.86 -65.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.96 Total: 12.13 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.91 Total: 14.25 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -6.09 Total: -126.61 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.88 Total: -10.59 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.08 Total: -2.84 kcal Total: -68.64 2.86 -65.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229822492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.021 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds