Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 C 1.53001 * 109.46761 * 239.99884 * 2 1 3 5 5 C 1.50699 * 109.47454 * 120.00539 * 2 1 3 6 6 N 1.31792 * 119.09655 * 59.99240 * 5 2 1 7 7 C 1.32489 * 120.96406 * 179.97438 * 6 5 2 8 8 C 1.50705 * 120.40809 * 179.97438 * 7 6 5 9 9 Cl 1.80300 * 109.46661 * 270.01706 * 8 7 6 10 10 C 1.38224 * 119.17623 * 359.97438 * 7 6 5 11 11 C 1.39376 * 118.35227 * 0.02562 * 10 7 6 12 12 O 1.35525 * 120.51067 * 179.97438 * 11 10 7 13 13 C 1.42901 * 116.99807 * 179.97438 * 12 11 10 14 14 C 1.53928 * 113.73250 * 246.72284 * 13 12 11 15 15 N 1.47957 * 86.18146 * 221.92008 * 14 13 12 16 16 C 1.46907 * 110.99615 * 137.58240 * 15 14 13 17 17 C 1.50703 * 109.46866 * 70.64548 * 16 15 14 18 18 H 1.07996 * 120.00146 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99523 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47492 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47099 * 119.99968 * 21 19 17 24 24 H 1.48503 * 109.47275 * 239.99766 * 21 19 17 25 25 C 1.47957 * 90.76078 * 24.69227 * 15 14 13 26 26 N 1.31770 * 119.09233 * 240.23211 * 5 2 1 27 27 H 1.08999 * 109.46702 * 299.99798 * 1 2 3 28 28 H 1.09001 * 109.47048 * 59.99907 * 1 2 3 29 29 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47056 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47093 * 300.00066 * 3 2 1 32 32 H 1.08999 * 109.47026 * 60.00400 * 3 2 1 33 33 H 1.08998 * 109.47722 * 300.00000 * 4 2 1 34 34 H 1.09001 * 109.47169 * 60.00282 * 4 2 1 35 35 H 1.09005 * 109.47277 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47311 * 30.01571 * 8 7 6 37 37 H 1.08997 * 109.46975 * 150.02230 * 8 7 6 38 38 H 1.08007 * 120.82226 * 180.02562 * 10 7 6 39 39 H 1.08999 * 112.94051 * 18.43306 * 13 12 11 40 40 H 1.09000 * 113.76399 * 336.24073 * 14 13 12 41 41 H 1.09007 * 113.75892 * 107.60171 * 14 13 12 42 42 H 1.08997 * 109.46973 * 190.64217 * 16 15 14 43 43 H 1.08995 * 109.47405 * 310.64290 * 16 15 14 44 44 H 0.97000 * 120.00240 * 180.02562 * 20 19 17 45 45 H 1.09000 * 113.76095 * 220.98979 * 25 15 14 46 46 H 1.09006 * 113.76154 * 89.63066 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7031 -1.9723 1.4212 7 6 2.1246 -2.6327 2.4896 8 6 1.7400 -4.0752 2.6956 9 17 0.1993 -4.1589 3.6283 10 6 2.9215 -1.9823 3.4128 11 6 3.2506 -0.6481 3.1798 12 8 4.0287 0.0319 4.0566 13 6 4.3198 1.3955 3.7435 14 6 5.8035 1.6553 3.4267 15 7 5.6591 2.8846 4.2374 16 6 6.8236 3.0783 5.1118 17 6 8.0206 3.4563 4.2779 18 1 7.9259 3.5436 3.2056 19 6 9.2366 3.6909 4.8840 20 7 9.3520 3.5841 6.1897 21 14 10.7205 4.1588 3.8503 22 1 10.3299 4.2109 2.4185 23 1 11.2196 5.4912 4.2754 24 1 11.7916 3.1469 4.0352 25 6 4.5306 2.2843 4.9825 26 7 2.7850 -0.0517 2.0882 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.6051 -4.5572 1.7272 37 1 2.5280 -4.5858 3.2491 38 1 3.2803 -2.4952 4.2930 39 1 3.6323 1.8193 3.0115 40 1 6.4807 0.9199 3.8610 41 1 6.0005 1.8457 2.3716 42 1 6.6129 3.8737 5.8266 43 1 7.0325 2.1532 5.6490 44 1 10.2074 3.7495 6.6161 45 1 3.7104 2.9771 5.1707 46 1 4.8354 1.7327 5.8720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229823870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = 26.219006 kcal Electronic energy + Delta-G solvation = -27183.218619 eV Core-core repulsion = 23328.154940 eV Total energy + Delta-G solvation = -3855.063680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61465 -39.73555 -37.68071 -37.02441 -36.23010 -33.81334 -32.91491 -31.66133 -29.44043 -28.47923 -27.48136 -27.22314 -25.79091 -25.20160 -24.71443 -23.06553 -21.49736 -20.01824 -19.60354 -18.19305 -17.60736 -16.51071 -16.06036 -15.78937 -15.56593 -15.35516 -14.90086 -14.56950 -14.52013 -14.43408 -14.22064 -13.98864 -13.85337 -13.58531 -12.96893 -12.54458 -12.36239 -12.34632 -12.16318 -11.99705 -11.79814 -11.79536 -11.63525 -11.16964 -11.12071 -11.08762 -10.98398 -10.87905 -10.77327 -10.72535 -10.60402 -10.33543 -10.08901 -9.77637 -9.52239 -9.21727 -9.06185 -8.55549 -7.94520 -6.10386 -4.12613 0.49754 0.91159 1.98990 2.79368 3.26754 3.34223 3.39265 3.43468 3.55225 3.64227 4.25411 4.37487 4.46116 4.64087 4.72323 4.75266 4.77440 4.81170 4.82553 4.97741 5.15076 5.25692 5.25988 5.38693 5.43807 5.48298 5.62043 5.62477 5.70617 5.77728 5.79551 5.88974 5.96285 6.03164 6.09252 6.13190 6.28538 6.29250 6.34235 6.54834 6.75946 7.11671 7.22612 7.54863 7.79405 7.90829 8.01300 8.32749 8.94601 9.52169 11.00899 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002588 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.489298 B =10817.146499 C =11961.652644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.001 3.999 3 C -0.131 4.131 4 C -0.135 4.135 5 C 0.373 3.627 6 N -0.527 5.527 7 C 0.180 3.820 8 C 0.019 3.981 9 Cl -0.156 7.156 10 C -0.238 4.238 11 C 0.378 3.622 12 O -0.286 6.286 13 C 0.047 3.953 14 C 0.014 3.986 15 N -0.470 5.470 16 C 0.163 3.837 17 C -0.512 4.512 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.003 3.997 26 N -0.559 5.559 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.001 0.999 44 H 0.262 0.738 45 H 0.088 0.912 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -14.732 -10.800 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 C -0.189 4.189 4 C -0.193 4.193 5 C 0.105 3.895 6 N -0.247 5.247 7 C 0.036 3.964 8 C -0.045 4.045 9 Cl -0.130 7.130 10 C -0.262 4.262 11 C 0.190 3.810 12 O -0.188 6.188 13 C -0.009 4.009 14 C -0.115 4.115 15 N -0.195 5.195 16 C 0.037 3.963 17 C -0.550 4.550 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.126 4.126 26 N -0.288 5.288 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.939 -13.671 -11.335 25.963 hybrid contribution 1.516 -0.715 0.983 1.943 sum -17.423 -14.386 -10.352 24.853 Atomic orbital electron populations 1.21833 0.92388 1.02898 1.02129 1.19431 0.96289 0.95254 0.89143 1.21744 1.02121 0.93068 1.01919 1.21835 1.01153 1.00835 0.95462 1.22773 0.87351 0.86190 0.93183 1.67921 1.25247 1.09643 1.21855 1.21025 0.90723 0.95537 0.89113 1.23035 0.88721 0.92046 1.00680 1.98753 1.38713 1.98626 1.76885 1.21711 1.06079 0.94127 1.04253 1.20134 0.85642 0.88907 0.86272 1.86419 1.61395 1.27597 1.43414 1.25128 0.98732 0.76916 1.00159 1.24168 0.93006 0.93349 1.00955 1.68612 1.06899 1.27529 1.16420 1.20238 0.87189 0.96595 0.92289 1.21107 0.93078 1.46775 0.94048 0.91872 1.24995 0.99057 0.95465 0.95011 1.69962 1.25292 1.49623 1.08718 0.86422 0.82313 0.78113 0.80489 1.19611 1.20879 1.21022 1.24258 0.97650 0.95183 0.95527 1.67926 1.16148 1.40060 1.04710 0.92717 0.91536 0.91415 0.91682 0.92227 0.91883 0.91479 0.91499 0.92625 0.86427 0.86538 0.82910 0.86009 0.90652 0.89669 0.94634 0.98096 0.92847 0.89336 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.37 37.16 0.31 -0.84 16 2 C 0.00 0.01 0.92 -155.66 -0.14 -0.13 16 3 C -0.13 -1.32 7.67 37.16 0.28 -1.03 16 4 C -0.13 -1.15 8.37 37.16 0.31 -0.84 16 5 C 0.37 4.58 6.25 -157.22 -0.98 3.60 16 6 N -0.53 -6.09 9.74 -7.05 -0.07 -6.16 16 7 C 0.18 1.88 6.19 -82.31 -0.51 1.37 16 8 C 0.02 0.13 6.99 36.01 0.25 0.38 16 9 Cl -0.16 -1.40 29.13 -51.86 -1.51 -2.91 16 10 C -0.24 -2.77 9.81 -39.16 -0.38 -3.15 16 11 C 0.38 5.37 7.53 -16.70 -0.13 5.24 16 12 O -0.29 -4.54 10.16 -18.27 -0.19 -4.72 16 13 C 0.05 0.78 4.38 -25.80 -0.11 0.66 16 14 C 0.01 0.28 7.29 -2.77 -0.02 0.26 16 15 N -0.47 -10.18 6.25 -240.00 -1.50 -11.68 16 16 C 0.16 4.24 4.58 -4.97 -0.02 4.21 16 17 C -0.51 -14.40 8.84 -34.44 -0.30 -14.70 16 18 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.00 0.05 7.81 -2.77 -0.02 0.03 16 26 N -0.56 -7.76 7.33 -10.78 -0.08 -7.84 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 30 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 33 H 0.07 0.57 8.01 -51.93 -0.42 0.16 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 39 H 0.12 1.95 6.90 -51.93 -0.36 1.59 16 40 H 0.08 1.56 7.78 -51.93 -0.40 1.15 16 41 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.00 0.03 7.69 -51.93 -0.40 -0.37 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -30.97 395.01 -10.67 -41.64 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.43 Total: -1.60 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.57 Total: -3.45 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.91 Total: -51.49 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.51 Total: -2.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.97 -10.67 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229823870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.858 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds