Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 C 1.53001 * 109.46761 * 239.99884 * 2 1 3 5 5 C 1.50699 * 109.47454 * 120.00539 * 2 1 3 6 6 N 1.31792 * 119.09655 * 59.99240 * 5 2 1 7 7 C 1.32489 * 120.96406 * 179.97438 * 6 5 2 8 8 C 1.50705 * 120.40809 * 179.97438 * 7 6 5 9 9 Cl 1.80300 * 109.46661 * 270.01706 * 8 7 6 10 10 C 1.38224 * 119.17623 * 359.97438 * 7 6 5 11 11 C 1.39376 * 118.35227 * 0.02562 * 10 7 6 12 12 O 1.35525 * 120.51067 * 179.97438 * 11 10 7 13 13 C 1.42901 * 116.99807 * 179.97438 * 12 11 10 14 14 C 1.53928 * 113.73250 * 246.72284 * 13 12 11 15 15 N 1.47957 * 86.18146 * 221.92008 * 14 13 12 16 16 C 1.46907 * 110.99615 * 137.58240 * 15 14 13 17 17 C 1.50703 * 109.46866 * 70.64548 * 16 15 14 18 18 H 1.07996 * 120.00146 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99523 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47492 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47099 * 119.99968 * 21 19 17 24 24 H 1.48503 * 109.47275 * 239.99766 * 21 19 17 25 25 C 1.47957 * 90.76078 * 24.69227 * 15 14 13 26 26 N 1.31770 * 119.09233 * 240.23211 * 5 2 1 27 27 H 1.08999 * 109.46702 * 299.99798 * 1 2 3 28 28 H 1.09001 * 109.47048 * 59.99907 * 1 2 3 29 29 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47056 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47093 * 300.00066 * 3 2 1 32 32 H 1.08999 * 109.47026 * 60.00400 * 3 2 1 33 33 H 1.08998 * 109.47722 * 300.00000 * 4 2 1 34 34 H 1.09001 * 109.47169 * 60.00282 * 4 2 1 35 35 H 1.09005 * 109.47277 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47311 * 30.01571 * 8 7 6 37 37 H 1.08997 * 109.46975 * 150.02230 * 8 7 6 38 38 H 1.08007 * 120.82226 * 180.02562 * 10 7 6 39 39 H 1.08999 * 112.94051 * 18.43306 * 13 12 11 40 40 H 1.09000 * 113.76399 * 336.24073 * 14 13 12 41 41 H 1.09007 * 113.75892 * 107.60171 * 14 13 12 42 42 H 1.08997 * 109.46973 * 190.64217 * 16 15 14 43 43 H 1.08995 * 109.47405 * 310.64290 * 16 15 14 44 44 H 0.97000 * 120.00240 * 180.02562 * 20 19 17 45 45 H 1.09000 * 113.76095 * 220.98979 * 25 15 14 46 46 H 1.09006 * 113.76154 * 89.63066 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7031 -1.9723 1.4212 7 6 2.1246 -2.6327 2.4896 8 6 1.7400 -4.0752 2.6956 9 17 0.1993 -4.1589 3.6283 10 6 2.9215 -1.9823 3.4128 11 6 3.2506 -0.6481 3.1798 12 8 4.0287 0.0319 4.0566 13 6 4.3198 1.3955 3.7435 14 6 5.8035 1.6553 3.4267 15 7 5.6591 2.8846 4.2374 16 6 6.8236 3.0783 5.1118 17 6 8.0206 3.4563 4.2779 18 1 7.9259 3.5436 3.2056 19 6 9.2366 3.6909 4.8840 20 7 9.3520 3.5841 6.1897 21 14 10.7205 4.1588 3.8503 22 1 10.3299 4.2109 2.4185 23 1 11.2196 5.4912 4.2754 24 1 11.7916 3.1469 4.0352 25 6 4.5306 2.2843 4.9825 26 7 2.7850 -0.0517 2.0882 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.6051 -4.5572 1.7272 37 1 2.5280 -4.5858 3.2491 38 1 3.2803 -2.4952 4.2930 39 1 3.6323 1.8193 3.0115 40 1 6.4807 0.9199 3.8610 41 1 6.0005 1.8457 2.3716 42 1 6.6129 3.8737 5.8266 43 1 7.0325 2.1532 5.6490 44 1 10.2074 3.7495 6.6161 45 1 3.7104 2.9771 5.1707 46 1 4.8354 1.7327 5.8720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229823870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = 5.979960 kcal Electronic energy + Delta-G solvation = -27184.096250 eV Core-core repulsion = 23328.154940 eV Total energy + Delta-G solvation = -3855.941310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.59087 -41.14398 -38.94821 -37.83030 -36.95526 -35.08895 -34.69412 -32.62328 -31.17374 -29.42029 -28.15218 -27.98074 -27.45771 -26.92166 -25.62782 -24.39594 -23.02837 -21.16062 -20.79466 -19.39463 -18.58974 -18.58259 -17.18243 -17.04053 -16.69466 -16.43563 -16.29139 -15.96146 -15.77315 -15.27122 -15.16767 -14.93962 -14.73670 -14.55984 -14.29129 -14.02929 -13.85653 -13.78905 -13.37380 -13.06538 -13.02735 -12.85423 -12.62591 -12.58211 -12.53867 -12.28082 -12.00162 -11.89286 -11.83997 -11.80959 -11.67264 -11.59515 -11.43565 -11.25527 -11.16574 -10.70340 -10.48669 -10.11519 -9.75874 -8.27910 -6.38803 -0.36493 -0.07689 1.32162 1.37665 1.38485 1.52083 1.65876 2.35946 2.61073 2.63811 2.73482 3.04748 3.09032 3.31683 3.37697 3.71978 3.91403 3.95372 4.02882 4.05117 4.07516 4.17333 4.34320 4.39768 4.41318 4.49324 4.56660 4.62174 4.73659 4.80526 4.80890 4.84128 4.91740 4.94819 5.02287 5.02742 5.06091 5.16340 5.33729 5.39182 5.44281 5.48970 5.69136 5.77927 6.00701 6.05533 6.27226 6.75292 6.95928 7.31170 8.84155 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002588 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.489298 B =10817.146499 C =11961.652644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.002 4.002 3 C -0.127 4.127 4 C -0.129 4.129 5 C 0.361 3.639 6 N -0.526 5.526 7 C 0.182 3.818 8 C 0.024 3.976 9 Cl -0.170 7.170 10 C -0.238 4.238 11 C 0.351 3.649 12 O -0.296 6.296 13 C 0.076 3.924 14 C 0.012 3.988 15 N -0.482 5.482 16 C 0.178 3.822 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.003 3.997 26 N -0.574 5.574 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.171 0.829 39 H 0.131 0.869 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.009 0.991 43 H -0.023 1.023 44 H 0.266 0.734 45 H 0.111 0.889 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 -15.818 -12.663 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.004 4.004 3 C -0.184 4.184 4 C -0.187 4.187 5 C 0.093 3.907 6 N -0.245 5.245 7 C 0.038 3.962 8 C -0.039 4.039 9 Cl -0.143 7.143 10 C -0.261 4.261 11 C 0.165 3.835 12 O -0.199 6.199 13 C 0.019 3.981 14 C -0.117 4.117 15 N -0.207 5.207 16 C 0.052 3.948 17 C -0.568 4.568 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.126 4.126 26 N -0.304 5.304 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.189 0.811 39 H 0.148 0.852 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.027 0.973 43 H -0.005 1.005 44 H 0.075 0.925 45 H 0.129 0.871 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.788 -14.772 -13.217 28.008 hybrid contribution 1.678 -0.464 1.538 2.324 sum -18.110 -15.236 -11.678 26.391 Atomic orbital electron populations 1.21793 0.91197 1.02929 1.02677 1.19588 0.97131 0.94908 0.88745 1.21702 1.00941 0.93480 1.02308 1.21803 1.00366 1.00995 0.95527 1.23318 0.87080 0.86686 0.93603 1.68025 1.24918 1.09336 1.22196 1.21563 0.89627 0.96859 0.88194 1.23279 0.88683 0.89968 1.01993 1.98759 1.39774 1.98539 1.77266 1.21979 1.05891 0.93133 1.05117 1.20422 0.86562 0.89855 0.86700 1.86375 1.62435 1.26892 1.44244 1.24616 0.96713 0.77753 0.98997 1.24136 0.95033 0.92055 1.00517 1.68491 1.06201 1.29421 1.16560 1.19886 0.88605 0.94324 0.92032 1.21398 0.94232 1.47081 0.94115 0.92140 1.25927 1.02219 0.95124 0.96239 1.70078 1.26334 1.50297 1.10452 0.85311 0.78260 0.78003 0.78930 1.18797 1.20127 1.20186 1.24312 0.96713 0.95819 0.95708 1.67892 1.16740 1.40742 1.04996 0.93786 0.89368 0.91592 0.93413 0.90095 0.93200 0.91389 0.89413 0.93789 0.84673 0.83705 0.81111 0.85156 0.92367 0.89269 0.97281 1.00545 0.92471 0.87083 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.37 71.98 0.60 -1.36 16 2 C 0.00 -0.03 0.92 -52.93 -0.05 -0.08 16 3 C -0.13 -2.43 7.67 71.98 0.55 -1.88 16 4 C -0.13 -1.96 8.37 71.98 0.60 -1.36 16 5 C 0.36 8.52 6.25 138.76 0.87 9.39 16 6 N -0.53 -11.31 9.74 -176.22 -1.72 -13.03 16 7 C 0.18 3.46 6.19 42.46 0.26 3.72 16 8 C 0.02 0.27 6.99 71.24 0.50 0.77 16 9 Cl -0.17 -2.71 29.13 -2.72 -0.08 -2.79 16 10 C -0.24 -5.23 9.81 22.54 0.22 -5.01 16 11 C 0.35 9.83 7.53 84.82 0.64 10.47 16 12 O -0.30 -9.42 10.16 -88.28 -0.90 -10.31 16 13 C 0.08 2.53 4.38 31.24 0.14 2.67 16 14 C 0.01 0.47 7.29 86.40 0.63 1.10 16 15 N -0.48 -21.45 6.25 -916.42 -5.73 -27.18 16 16 C 0.18 9.67 4.58 85.56 0.39 10.06 16 17 C -0.53 -30.52 8.84 25.60 0.23 -30.29 16 18 H 0.06 3.44 7.80 -2.91 -0.02 3.41 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 21 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.00 0.12 7.81 86.40 0.67 0.79 16 26 N -0.57 -15.75 7.33 -300.68 -2.20 -17.95 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.04 8.01 -2.39 -0.02 1.02 16 30 H 0.05 1.07 8.05 -2.38 -0.02 1.05 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 33 H 0.07 1.02 8.01 -2.39 -0.02 1.00 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.14 0.89 8.09 -2.39 -0.02 0.87 16 38 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.13 4.15 6.90 -2.39 -0.02 4.14 16 40 H 0.06 2.51 7.78 -2.39 -0.02 2.49 16 41 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H -0.02 -1.34 7.69 -2.39 -0.02 -1.36 16 44 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.07 2.54 7.79 -2.38 -0.02 2.53 16 Total: -1.00 -67.99 395.01 -0.64 -68.63 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.96 Total: 12.43 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.72 Total: -0.34 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -9.37 Total: -114.09 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.90 Total: -10.31 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.79 kcal Total: -67.99 -0.64 -68.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229823870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds