Wall clock time and date at job start Sat Apr 11 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30833 * 125.96030 * 2 1 4 4 C 1.33246 * 109.82808 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52558 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46750 * 90.00049 * 5 4 3 7 7 C 1.48183 * 111.07843 * 70.71092 * 6 5 4 8 8 C 1.53929 * 86.22638 * 137.45871 * 7 6 5 9 9 C 1.47963 * 110.99766 * 170.00050 * 6 5 4 10 10 H 1.09000 * 113.76009 * 336.84480 * 9 6 5 11 11 C 1.52998 * 113.76031 * 108.09744 * 9 6 5 12 12 N 1.46505 * 109.47470 * 303.02187 * 11 9 6 13 13 C 1.46500 * 119.99756 * 270.00188 * 12 11 9 14 14 C 1.34771 * 120.00116 * 89.99486 * 12 11 9 15 15 O 1.21288 * 119.99896 * 0.02562 * 14 12 11 16 16 C 1.50703 * 120.00048 * 180.02562 * 14 12 11 17 17 S 1.81000 * 109.46826 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99509 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00431 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.27840 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72423 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71959 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72080 * 22 20 18 26 26 N 1.30712 * 108.94725 * 0.26370 * 4 3 2 27 27 N 1.34427 * 125.96368 * 180.02562 * 2 1 3 28 28 H 0.97003 * 126.82202 * 359.97337 * 27 2 1 29 29 H 1.09005 * 109.46667 * 90.00227 * 1 2 3 30 30 H 1.08999 * 109.46934 * 209.99387 * 1 2 3 31 31 H 1.08998 * 109.46931 * 330.00206 * 1 2 3 32 32 H 1.08997 * 109.47052 * 330.00032 * 5 4 3 33 33 H 1.08996 * 109.47171 * 210.00072 * 5 4 3 34 34 H 1.08998 * 113.65487 * 23.13361 * 7 6 5 35 35 H 1.09000 * 113.92456 * 251.82256 * 7 6 5 36 36 H 1.09003 * 113.73414 * 222.01137 * 8 7 6 37 37 H 1.08997 * 113.73496 * 90.72772 * 8 7 6 38 38 H 1.09000 * 109.47145 * 183.02022 * 11 9 6 39 39 H 1.09007 * 109.47138 * 63.02086 * 11 9 6 40 40 H 1.08996 * 109.46996 * 269.99683 * 13 12 11 41 41 H 1.09003 * 109.47400 * 29.99677 * 13 12 11 42 42 H 1.09003 * 109.46993 * 149.99446 * 13 12 11 43 43 H 1.09000 * 109.46926 * 60.00592 * 16 14 12 44 44 H 1.09001 * 109.47144 * 300.00330 * 16 14 12 45 45 H 0.97005 * 119.99723 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 7 5.1219 1.9276 1.3835 7 6 5.7334 0.7471 2.0381 8 6 6.7667 1.7304 2.6168 9 6 6.4153 2.6447 1.4292 10 1 7.0390 2.4821 0.5502 11 6 6.2879 4.1223 1.8055 12 7 5.3878 4.7906 0.8624 13 6 5.9252 5.4001 -0.3566 14 6 4.0652 4.8445 1.1161 15 8 3.6203 4.3401 2.1254 16 6 3.1392 5.5314 0.1457 17 16 1.4404 5.4368 0.7630 18 6 0.5980 6.2912 -0.5274 19 1 1.1523 6.6823 -1.3678 20 6 -0.7781 6.4616 -0.4639 21 7 -1.4538 5.9845 0.5601 22 14 -1.6721 7.3605 -1.8357 23 1 -3.1257 7.4024 -1.5350 24 1 -1.1487 8.7462 -1.9428 25 1 -1.4527 6.6479 -3.1199 26 7 3.6195 -0.6168 -0.0066 27 7 2.2965 -1.0880 -0.0005 28 1 2.0094 -2.0146 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 4.4699 2.5469 -0.5151 33 1 5.5741 1.1509 -0.5154 34 1 6.1563 0.0281 1.3364 35 1 5.0990 0.2821 2.7927 36 1 7.7899 1.3554 2.5940 37 1 6.4854 2.1425 3.5858 38 1 7.2702 4.5932 1.7661 39 1 5.8847 4.2068 2.8147 40 1 6.1910 6.4381 -0.1569 41 1 6.8122 4.8529 -0.6758 42 1 5.1723 5.3627 -1.1439 43 1 3.2012 5.0402 -0.8254 44 1 3.4306 6.5768 0.0434 45 1 -2.4155 6.1033 0.6042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:45 Heat of formation + Delta-G solvation = 99.224877 kcal Electronic energy + Delta-G solvation = -28079.243103 eV Core-core repulsion = 24261.681653 eV Total energy + Delta-G solvation = -3817.561450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96156 -40.20179 -38.57308 -34.94250 -33.50850 -32.28515 -32.14574 -30.77027 -29.84608 -27.85349 -27.80458 -26.09743 -25.32374 -24.91889 -23.22996 -21.23434 -20.21421 -19.62991 -18.95031 -17.71921 -17.47688 -16.49754 -16.13841 -15.86122 -15.68644 -15.20317 -14.68882 -14.55830 -14.48101 -14.15001 -13.71642 -13.27800 -13.09464 -12.89468 -12.78863 -12.66292 -12.59810 -12.44448 -12.21681 -11.85835 -11.81703 -11.65266 -11.47888 -11.40438 -10.97008 -10.93530 -10.89553 -10.69353 -10.65458 -9.85609 -9.67198 -9.65819 -9.30760 -8.96714 -8.92270 -8.74656 -8.15114 -7.98966 -6.26534 -6.07491 -3.73086 1.70460 2.72971 3.02701 3.16988 3.30636 3.33905 3.37022 3.46332 3.79049 4.02962 4.15687 4.34533 4.49949 4.65320 4.76134 4.91339 5.03735 5.15577 5.22809 5.26728 5.27992 5.30217 5.37981 5.41128 5.52752 5.56738 5.58309 5.66277 5.74241 5.79385 5.82537 5.83795 6.04223 6.06098 6.14256 6.15778 6.31383 6.35209 6.47587 6.56928 6.92154 7.08482 7.17878 7.72113 7.84556 8.35825 8.48541 8.96152 9.37594 10.99657 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.004468 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.596916 B = 6265.837566 C = 8443.528734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.284 3.716 3 N -0.498 5.498 4 C 0.243 3.757 5 C 0.121 3.879 6 N -0.438 5.438 7 C 0.003 3.997 8 C -0.134 4.134 9 C 0.015 3.985 10 H 0.076 0.924 11 C 0.140 3.860 12 N -0.627 5.627 13 C 0.082 3.918 14 C 0.534 3.466 15 O -0.487 6.487 16 C -0.147 4.147 17 S -0.048 6.048 18 C -0.531 4.531 19 H 0.068 0.932 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.275 1.275 25 H -0.275 1.275 26 N -0.326 5.326 27 N -0.491 5.491 28 H 0.434 0.566 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.471 -12.123 -1.641 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.006 3.994 3 N -0.226 5.226 4 C -0.040 4.040 5 C -0.009 4.009 6 N -0.161 5.161 7 C -0.126 4.126 8 C -0.173 4.173 9 C -0.096 4.096 10 H 0.094 0.906 11 C 0.016 3.984 12 N -0.365 5.365 13 C -0.062 4.062 14 C 0.321 3.679 15 O -0.358 6.358 16 C -0.298 4.298 17 S 0.179 5.821 18 C -0.680 4.680 19 H 0.086 0.914 20 C -0.134 4.134 21 N -0.504 5.504 22 Si 0.739 3.261 23 H -0.209 1.209 24 H -0.201 1.201 25 H -0.201 1.201 26 N -0.157 5.157 27 N -0.209 5.209 28 H 0.279 0.721 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.584 -12.575 0.197 19.258 hybrid contribution 0.223 0.059 -2.812 2.822 sum 14.807 -12.516 -2.615 19.564 Atomic orbital electron populations 1.20427 0.83604 1.05308 1.04523 1.24565 0.96846 0.82454 0.95529 1.70626 1.00873 1.28592 1.22467 1.23824 0.93563 0.89342 0.97245 1.20775 0.90773 0.96559 0.92822 1.68821 1.24008 1.10760 1.12522 1.23868 0.96008 0.93712 0.98981 1.23326 0.98732 0.96401 0.98819 1.23952 0.91150 0.96239 0.98277 0.90575 1.21254 0.93224 0.89087 0.94856 1.47778 1.07182 1.58384 1.23130 1.21710 0.99488 0.97643 0.87365 1.20115 0.81275 0.79381 0.87104 1.90709 1.74570 1.43410 1.27124 1.23521 1.03040 1.01881 1.01316 1.85398 0.91465 1.74549 1.30682 1.22862 0.94989 1.41252 1.08890 0.91391 1.24919 0.96410 0.95721 0.96357 1.70024 1.07906 1.43502 1.29003 0.86324 0.78311 0.79912 0.81519 1.20943 1.20097 1.20090 1.77847 0.97089 1.12490 1.28283 1.47996 1.04300 1.09791 1.58853 0.72077 0.89133 0.90360 0.87356 0.88270 0.92715 0.91366 0.89867 0.91062 0.88761 0.90720 0.89267 0.93017 0.91947 0.91001 0.89952 0.90135 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.51 36.01 0.38 -0.54 16 2 C 0.28 4.32 8.24 -155.69 -1.28 3.04 16 3 N -0.50 -9.66 11.19 -8.16 -0.09 -9.75 16 4 C 0.24 4.22 7.18 -156.85 -1.13 3.10 16 5 C 0.12 1.86 5.45 -4.98 -0.03 1.83 16 6 N -0.44 -6.54 4.97 -231.16 -1.15 -7.69 16 7 C 0.00 0.04 7.49 -2.65 -0.02 0.02 16 8 C -0.13 -1.35 7.84 -25.79 -0.20 -1.55 16 9 C 0.01 0.17 3.58 -66.65 -0.24 -0.07 16 10 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 11 C 0.14 1.70 5.59 -4.04 -0.02 1.68 16 12 N -0.63 -9.12 2.83 -181.56 -0.51 -9.64 16 13 C 0.08 0.89 10.24 59.85 0.61 1.50 16 14 C 0.53 10.62 7.00 -10.99 -0.08 10.54 16 15 O -0.49 -11.56 14.88 5.55 0.08 -11.47 16 16 C -0.15 -3.17 4.71 36.01 0.17 -3.00 16 17 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 18 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 21 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 N -0.33 -5.08 12.80 32.42 0.41 -4.66 16 27 N -0.49 -6.35 7.45 32.62 0.24 -6.11 16 28 H 0.43 3.75 8.96 -182.33 -1.63 2.11 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.10 1.67 7.91 -51.93 -0.41 1.26 16 33 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.09 1.29 7.15 -51.93 -0.37 0.92 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 42 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 43 H 0.08 1.71 7.40 -51.92 -0.38 1.32 16 44 H 0.08 1.63 8.11 -51.91 -0.42 1.21 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -38.83 389.86 -11.37 -50.21 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.09 Total: 2.41 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.64 Total: 3.39 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.36 Total: -63.61 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.83 -11.37 -50.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.431 kcal (2) G-P(sol) polarization free energy of solvation -38.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds