Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30828 * 125.96301 * 2 1 4 4 C 1.33245 * 109.83141 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52688 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47156 * 90.00071 * 5 4 3 7 7 C 1.48188 * 111.07549 * 269.29033 * 6 5 4 8 8 C 1.53940 * 86.22320 * 222.53623 * 7 6 5 9 9 C 1.47957 * 110.99994 * 169.99763 * 6 5 4 10 10 H 1.09002 * 113.76222 * 23.15684 * 9 6 5 11 11 C 1.52996 * 113.76271 * 251.90165 * 9 6 5 12 12 N 1.46502 * 109.47041 * 56.98076 * 11 9 6 13 13 C 1.46499 * 120.00062 * 90.00341 * 12 11 9 14 14 C 1.34779 * 119.99726 * 270.00095 * 12 11 9 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 11 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 11 17 17 S 1.81004 * 109.46790 * 180.02562 * 16 14 12 18 18 C 1.76197 * 99.99958 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99914 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47104 * 89.99919 * 22 20 18 24 24 H 1.48498 * 109.46993 * 210.00231 * 22 20 18 25 25 H 1.48504 * 109.47061 * 330.00171 * 22 20 18 26 26 N 1.30713 * 108.94456 * 0.26417 * 4 3 2 27 27 N 1.34436 * 125.96270 * 180.02562 * 2 1 3 28 28 H 0.97001 * 126.81939 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.47360 * 90.00214 * 1 2 3 30 30 H 1.09007 * 109.47475 * 209.99846 * 1 2 3 31 31 H 1.08996 * 109.47226 * 330.00406 * 1 2 3 32 32 H 1.08999 * 109.46969 * 330.00078 * 5 4 3 33 33 H 1.09005 * 109.47106 * 210.00463 * 5 4 3 34 34 H 1.08998 * 113.82204 * 108.18971 * 7 6 5 35 35 H 1.08992 * 113.75851 * 336.87123 * 7 6 5 36 36 H 1.09001 * 113.73242 * 269.26957 * 8 7 6 37 37 H 1.08998 * 113.82562 * 137.99951 * 8 7 6 38 38 H 1.09002 * 109.47038 * 296.97986 * 11 9 6 39 39 H 1.09006 * 109.47661 * 176.98205 * 11 9 6 40 40 H 1.09002 * 109.47391 * 89.99876 * 13 12 11 41 41 H 1.09001 * 109.46813 * 329.99933 * 13 12 11 42 42 H 1.09004 * 109.47041 * 210.00060 * 13 12 11 43 43 H 1.08996 * 109.47057 * 299.99739 * 16 14 12 44 44 H 1.08996 * 109.47084 * 60.00703 * 16 14 12 45 45 H 0.96994 * 120.00208 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0013 6 7 5.1219 1.9275 1.3834 7 6 4.4164 3.1323 1.8803 8 6 5.7657 3.5434 2.4968 9 6 6.4153 2.6446 1.4291 10 1 6.6604 3.1677 0.5047 11 6 7.5725 1.7956 1.9591 12 7 7.7077 0.5886 1.1400 13 6 8.5770 0.5971 -0.0392 14 6 7.0324 -0.5298 1.4714 15 8 6.3132 -0.5371 2.4478 16 6 7.1711 -1.7713 0.6284 17 16 6.1481 -3.0915 1.3260 18 6 6.4919 -4.3836 0.1784 19 1 7.1665 -4.2079 -0.6465 20 6 5.8965 -5.6276 0.3352 21 7 5.0746 -5.8419 1.3408 22 14 6.2615 -6.9977 -0.8810 23 1 7.4354 -7.7766 -0.4115 24 1 5.0822 -7.8942 -0.9853 25 1 6.5570 -6.4115 -2.2130 26 7 3.6194 -0.6168 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0147 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 4.4698 2.5469 -0.5151 33 1 5.5740 1.1508 -0.5155 34 1 3.6438 2.9169 2.6183 35 1 4.0743 3.7986 1.0885 36 1 5.9089 3.1866 3.5168 37 1 5.9988 4.6018 2.3803 38 1 7.3721 1.5129 2.9926 39 1 8.4968 2.3716 1.9128 40 1 9.5835 0.2938 0.2491 41 1 8.6072 1.6018 -0.4610 42 1 8.1871 -0.0977 -0.7830 43 1 6.8440 -1.5579 -0.3892 44 1 8.2142 -2.0874 0.6161 45 1 4.6588 -6.7113 1.4506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 97.982779 kcal Electronic energy + Delta-G solvation = -28291.534523 eV Core-core repulsion = 24473.919211 eV Total energy + Delta-G solvation = -3817.615311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75283 -40.17397 -38.56511 -34.94225 -33.38797 -32.33996 -32.00621 -30.72518 -29.84933 -27.92570 -27.64154 -26.10089 -25.37326 -24.83653 -23.21628 -21.09795 -20.01817 -19.62311 -18.95537 -17.54049 -17.47454 -16.43969 -16.07634 -15.87155 -15.64740 -15.11194 -14.74031 -14.68025 -14.39341 -13.92320 -13.74534 -13.39421 -13.13155 -12.93577 -12.86335 -12.77703 -12.65443 -12.45257 -12.22026 -11.86404 -11.66275 -11.48604 -11.40863 -11.30992 -11.02594 -10.95799 -10.92401 -10.69904 -10.67919 -9.71063 -9.68761 -9.63704 -9.07297 -8.98342 -8.97144 -8.74314 -8.15640 -8.02243 -6.29649 -6.13301 -3.77479 2.01837 3.01391 3.08632 3.16866 3.24426 3.30148 3.34276 3.45973 3.78232 4.05192 4.26700 4.30177 4.49777 4.73727 4.78081 5.01740 5.03941 5.16009 5.20604 5.21074 5.26187 5.31419 5.35516 5.38689 5.42345 5.57199 5.58174 5.68382 5.72665 5.73995 5.79554 5.81628 5.86202 6.05303 6.13580 6.17664 6.33378 6.43936 6.61995 6.80323 6.91881 7.12328 7.44095 7.67264 7.83937 8.43535 8.47979 8.95467 9.32245 10.93851 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.004640 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.772924 B = 6033.093690 C = 8178.253975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.264 3.736 3 N -0.544 5.544 4 C 0.218 3.782 5 C 0.123 3.877 6 N -0.442 5.442 7 C 0.008 3.992 8 C -0.136 4.136 9 C 0.014 3.986 10 H 0.076 0.924 11 C 0.139 3.861 12 N -0.628 5.628 13 C 0.082 3.918 14 C 0.537 3.463 15 O -0.489 6.489 16 C -0.144 4.144 17 S -0.046 6.046 18 C -0.529 4.529 19 H 0.068 0.932 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.246 5.246 27 N -0.471 5.471 28 H 0.442 0.558 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 19.272 -3.802 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 N -0.275 5.275 4 C -0.065 4.065 5 C -0.007 4.007 6 N -0.165 5.165 7 C -0.121 4.121 8 C -0.174 4.174 9 C -0.097 4.097 10 H 0.094 0.906 11 C 0.015 3.985 12 N -0.365 5.365 13 C -0.062 4.062 14 C 0.324 3.676 15 O -0.360 6.360 16 C -0.295 4.295 17 S 0.181 5.819 18 C -0.677 4.677 19 H 0.086 0.914 20 C -0.135 4.135 21 N -0.507 5.507 22 Si 0.739 3.261 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.198 1.198 26 N -0.075 5.075 27 N -0.190 5.190 28 H 0.288 0.712 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.473 18.451 -1.946 18.718 hybrid contribution 0.791 -0.925 -2.684 2.947 sum -1.683 17.526 -4.630 18.205 Atomic orbital electron populations 1.20293 0.84331 1.04616 1.03951 1.24201 0.96301 0.83321 0.97661 1.70188 1.01540 1.29754 1.25972 1.23753 0.92342 0.90558 0.99889 1.20679 0.92341 0.95446 0.92272 1.68639 1.02128 1.28597 1.17180 1.23916 0.97007 0.91457 0.99695 1.23338 0.95672 0.98772 0.99630 1.23926 0.92803 0.94368 0.98568 0.90635 1.21261 0.95650 0.85078 0.96471 1.47774 1.48003 1.11824 1.28882 1.21708 0.94189 1.02126 0.88186 1.20075 0.78834 0.83217 0.85462 1.90695 1.35545 1.82815 1.26982 1.23487 1.05005 0.98516 1.02475 1.85312 1.58125 1.01312 1.37170 1.22922 1.32096 0.98354 1.14366 0.91408 1.24918 0.94778 0.97839 0.95964 1.70029 1.28419 1.23323 1.28928 0.86272 0.77970 0.81044 0.80835 1.20364 1.20927 1.19849 1.78472 0.95654 1.11224 1.22113 1.48101 1.04456 1.10130 1.56320 0.71178 0.89554 0.90034 0.88919 0.92011 0.89418 0.89617 0.91326 0.88885 0.91084 0.89344 0.90767 0.93031 0.91911 0.91075 0.89979 0.90358 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.51 36.00 0.38 -0.27 16 2 C 0.26 3.87 8.24 -155.70 -1.28 2.59 16 3 N -0.54 -9.12 11.19 -8.16 -0.09 -9.21 16 4 C 0.22 3.95 7.70 -156.85 -1.21 2.74 16 5 C 0.12 1.88 5.42 -4.98 -0.03 1.85 16 6 N -0.44 -6.56 4.86 -231.13 -1.12 -7.68 16 7 C 0.01 0.10 7.96 -2.64 -0.02 0.08 16 8 C -0.14 -1.34 7.84 -25.78 -0.20 -1.54 16 9 C 0.01 0.16 3.55 -66.66 -0.24 -0.08 16 10 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 11 C 0.14 1.72 5.59 -4.04 -0.02 1.69 16 12 N -0.63 -9.25 2.83 -181.57 -0.51 -9.77 16 13 C 0.08 0.91 10.24 59.85 0.61 1.52 16 14 C 0.54 10.73 7.23 -10.98 -0.08 10.65 16 15 O -0.49 -11.62 14.88 5.56 0.08 -11.54 16 16 C -0.14 -3.14 4.71 36.01 0.17 -2.97 16 17 S -0.05 -1.29 20.57 -107.50 -2.21 -3.50 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 N -0.25 -5.01 12.80 32.42 0.41 -4.59 16 27 N -0.47 -7.98 7.45 32.62 0.24 -7.74 16 28 H 0.44 6.66 8.96 -182.34 -1.63 5.02 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 33 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 36 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.30 7.15 -51.93 -0.37 0.92 16 39 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 43 H 0.08 1.74 7.40 -51.92 -0.38 1.36 16 44 H 0.08 1.62 8.11 -51.92 -0.42 1.19 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -38.55 390.63 -11.40 -49.96 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.08 Total: 3.96 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.72 Total: 3.17 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.34 Total: -64.69 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.21 Total: -3.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.55 -11.40 -49.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.938 kcal (2) G-P(sol) polarization free energy of solvation -38.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds