Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30828 * 125.96301 * 2 1 4 4 C 1.33245 * 109.83141 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52688 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47156 * 90.00071 * 5 4 3 7 7 C 1.48188 * 111.07549 * 269.29033 * 6 5 4 8 8 C 1.53940 * 86.22320 * 222.53623 * 7 6 5 9 9 C 1.47957 * 110.99994 * 169.99763 * 6 5 4 10 10 H 1.09002 * 113.76222 * 23.15684 * 9 6 5 11 11 C 1.52996 * 113.76271 * 251.90165 * 9 6 5 12 12 N 1.46502 * 109.47041 * 56.98076 * 11 9 6 13 13 C 1.46499 * 120.00062 * 90.00341 * 12 11 9 14 14 C 1.34779 * 119.99726 * 270.00095 * 12 11 9 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 11 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 11 17 17 S 1.81004 * 109.46790 * 180.02562 * 16 14 12 18 18 C 1.76197 * 99.99958 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99914 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47104 * 89.99919 * 22 20 18 24 24 H 1.48498 * 109.46993 * 210.00231 * 22 20 18 25 25 H 1.48504 * 109.47061 * 330.00171 * 22 20 18 26 26 N 1.30713 * 108.94456 * 0.26417 * 4 3 2 27 27 N 1.34436 * 125.96270 * 180.02562 * 2 1 3 28 28 H 0.97001 * 126.81939 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.47360 * 90.00214 * 1 2 3 30 30 H 1.09007 * 109.47475 * 209.99846 * 1 2 3 31 31 H 1.08996 * 109.47226 * 330.00406 * 1 2 3 32 32 H 1.08999 * 109.46969 * 330.00078 * 5 4 3 33 33 H 1.09005 * 109.47106 * 210.00463 * 5 4 3 34 34 H 1.08998 * 113.82204 * 108.18971 * 7 6 5 35 35 H 1.08992 * 113.75851 * 336.87123 * 7 6 5 36 36 H 1.09001 * 113.73242 * 269.26957 * 8 7 6 37 37 H 1.08998 * 113.82562 * 137.99951 * 8 7 6 38 38 H 1.09002 * 109.47038 * 296.97986 * 11 9 6 39 39 H 1.09006 * 109.47661 * 176.98205 * 11 9 6 40 40 H 1.09002 * 109.47391 * 89.99876 * 13 12 11 41 41 H 1.09001 * 109.46813 * 329.99933 * 13 12 11 42 42 H 1.09004 * 109.47041 * 210.00060 * 13 12 11 43 43 H 1.08996 * 109.47057 * 299.99739 * 16 14 12 44 44 H 1.08996 * 109.47084 * 60.00703 * 16 14 12 45 45 H 0.96994 * 120.00208 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0013 6 7 5.1219 1.9275 1.3834 7 6 4.4164 3.1323 1.8803 8 6 5.7657 3.5434 2.4968 9 6 6.4153 2.6446 1.4291 10 1 6.6604 3.1677 0.5047 11 6 7.5725 1.7956 1.9591 12 7 7.7077 0.5886 1.1400 13 6 8.5770 0.5971 -0.0392 14 6 7.0324 -0.5298 1.4714 15 8 6.3132 -0.5371 2.4478 16 6 7.1711 -1.7713 0.6284 17 16 6.1481 -3.0915 1.3260 18 6 6.4919 -4.3836 0.1784 19 1 7.1665 -4.2079 -0.6465 20 6 5.8965 -5.6276 0.3352 21 7 5.0746 -5.8419 1.3408 22 14 6.2615 -6.9977 -0.8810 23 1 7.4354 -7.7766 -0.4115 24 1 5.0822 -7.8942 -0.9853 25 1 6.5570 -6.4115 -2.2130 26 7 3.6194 -0.6168 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0147 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 4.4698 2.5469 -0.5151 33 1 5.5740 1.1508 -0.5155 34 1 3.6438 2.9169 2.6183 35 1 4.0743 3.7986 1.0885 36 1 5.9089 3.1866 3.5168 37 1 5.9988 4.6018 2.3803 38 1 7.3721 1.5129 2.9926 39 1 8.4968 2.3716 1.9128 40 1 9.5835 0.2938 0.2491 41 1 8.6072 1.6018 -0.4610 42 1 8.1871 -0.0977 -0.7830 43 1 6.8440 -1.5579 -0.3892 44 1 8.2142 -2.0874 0.6161 45 1 4.6588 -6.7113 1.4506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 69.487671 kcal Electronic energy + Delta-G solvation = -28292.770163 eV Core-core repulsion = 24473.919211 eV Total energy + Delta-G solvation = -3818.850952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.99696 -41.25321 -39.91261 -36.27627 -34.55594 -34.53200 -33.20405 -31.92992 -31.08761 -29.17628 -28.70653 -27.64321 -27.13293 -25.92886 -24.28283 -22.25639 -21.25250 -20.70801 -20.30192 -19.43287 -18.73322 -17.83786 -17.25580 -17.04594 -16.89445 -16.85541 -16.25931 -15.94133 -15.79237 -15.48708 -14.94503 -14.53268 -14.45631 -14.27552 -14.04243 -13.86378 -13.66603 -13.60094 -13.34126 -13.15765 -13.08623 -12.91713 -12.76728 -12.66010 -12.53389 -12.50562 -12.26119 -11.91240 -11.68574 -11.62407 -11.12560 -10.96006 -10.93512 -10.57652 -10.34111 -10.13912 -9.78971 -9.29556 -8.51817 -8.31693 -6.03347 0.79078 1.28556 1.38002 1.45713 1.61228 1.83803 1.89472 1.91080 2.24965 2.34614 3.00424 3.00922 3.23865 3.38618 3.56086 3.72827 3.84239 3.92023 4.01442 4.23858 4.28134 4.31586 4.34021 4.39174 4.40822 4.50503 4.53268 4.65095 4.69085 4.74924 4.78010 4.86136 4.95722 5.01680 5.01844 5.03209 5.29805 5.39822 5.41907 5.46900 5.56827 5.82566 6.15320 6.21163 6.26891 6.50968 7.09216 7.21373 7.47849 8.77068 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.004640 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.772924 B = 6033.093690 C = 8178.253975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.272 3.728 3 N -0.562 5.562 4 C 0.214 3.786 5 C 0.129 3.871 6 N -0.483 5.483 7 C 0.008 3.992 8 C -0.117 4.117 9 C 0.019 3.981 10 H 0.106 0.894 11 C 0.136 3.864 12 N -0.615 5.615 13 C 0.074 3.926 14 C 0.539 3.461 15 O -0.537 6.537 16 C -0.118 4.118 17 S -0.121 6.121 18 C -0.544 4.544 19 H 0.070 0.930 20 C 0.018 3.982 21 N -0.910 5.910 22 Si 0.990 3.010 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.263 1.263 26 N -0.308 5.308 27 N -0.484 5.484 28 H 0.445 0.555 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 21.279 -5.577 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.005 4.005 3 N -0.293 5.293 4 C -0.069 4.069 5 C -0.002 4.002 6 N -0.207 5.207 7 C -0.121 4.121 8 C -0.155 4.155 9 C -0.091 4.091 10 H 0.124 0.876 11 C 0.013 3.987 12 N -0.350 5.350 13 C -0.068 4.068 14 C 0.326 3.674 15 O -0.412 6.412 16 C -0.270 4.270 17 S 0.106 5.894 18 C -0.692 4.692 19 H 0.088 0.912 20 C -0.186 4.186 21 N -0.547 5.547 22 Si 0.813 3.187 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.188 1.188 26 N -0.137 5.137 27 N -0.203 5.203 28 H 0.291 0.709 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.458 20.502 -3.742 20.892 hybrid contribution 0.476 -1.435 -2.120 2.604 sum -0.982 19.067 -5.862 19.972 Atomic orbital electron populations 1.20569 0.80257 1.06057 1.05926 1.25282 0.98273 0.82175 0.94801 1.70243 1.01321 1.30458 1.27317 1.24385 0.93695 0.90424 0.98437 1.20720 0.91028 0.95458 0.92984 1.68635 1.04430 1.30652 1.16943 1.23920 0.97478 0.90913 0.99759 1.23218 0.93500 1.00457 0.98345 1.24033 0.90947 0.93951 1.00177 0.87633 1.21531 0.98323 0.84319 0.94544 1.47705 1.46713 1.10873 1.29695 1.21998 0.93872 1.04460 0.86497 1.19716 0.79129 0.83987 0.84570 1.90677 1.37990 1.83683 1.28878 1.23284 1.03799 0.97530 1.02384 1.85433 1.60742 1.04321 1.38890 1.23194 1.32465 0.99039 1.14538 0.91154 1.25970 0.94199 1.00531 0.97926 1.70184 1.29436 1.24189 1.30910 0.85079 0.78154 0.77275 0.78237 1.19332 1.20040 1.18762 1.78374 0.97803 1.12703 1.24838 1.48098 1.04112 1.10828 1.57231 0.70935 0.87104 0.88213 0.87762 0.90019 0.90409 0.92010 0.89650 0.90183 0.87457 0.92269 0.86251 0.91402 0.87891 0.92268 0.89747 0.89277 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.51 71.23 0.75 -0.40 16 2 C 0.27 8.07 8.24 138.22 1.14 9.21 16 3 N -0.56 -19.03 11.19 -179.73 -2.01 -21.04 16 4 C 0.21 7.96 7.70 138.63 1.07 9.03 16 5 C 0.13 3.87 5.42 85.56 0.46 4.34 16 6 N -0.48 -14.08 4.86 -885.16 -4.30 -18.38 16 7 C 0.01 0.18 7.96 86.36 0.69 0.87 16 8 C -0.12 -2.03 7.84 31.24 0.25 -1.78 16 9 C 0.02 0.38 3.55 45.02 0.16 0.54 16 10 H 0.11 1.52 7.92 -2.39 -0.02 1.51 16 11 C 0.14 3.03 5.59 86.38 0.48 3.52 16 12 N -0.61 -17.23 2.83 -846.74 -2.40 -19.63 16 13 C 0.07 1.43 10.24 127.77 1.31 2.74 16 14 C 0.54 21.95 7.23 87.66 0.63 22.58 16 15 O -0.54 -26.66 14.88 -3.02 -0.05 -26.71 16 16 C -0.12 -5.31 4.71 71.24 0.34 -4.97 16 17 S -0.12 -7.08 20.57 -56.49 -1.16 -8.24 16 18 C -0.54 -32.53 9.50 67.95 0.65 -31.89 16 19 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 20 C 0.02 1.07 5.49 84.86 0.47 1.54 16 21 N -0.91 -56.83 13.22 21.65 0.29 -56.54 16 22 Si 0.99 45.01 29.55 68.60 2.03 47.04 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 N -0.31 -13.19 12.80 -51.33 -0.66 -13.85 16 27 N -0.48 -17.21 7.45 -50.71 -0.38 -17.59 16 28 H 0.44 14.37 8.96 -213.10 -1.91 12.46 16 29 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.02 7.38 -2.39 -0.02 2.00 16 33 H 0.08 2.40 8.08 -2.38 -0.02 2.39 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.66 7.48 -2.39 -0.02 1.64 16 36 H 0.08 1.62 7.92 -2.39 -0.02 1.60 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.71 7.15 -2.39 -0.02 1.69 16 39 H 0.12 1.62 8.07 -2.38 -0.02 1.60 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 42 H 0.06 1.31 6.44 -2.38 -0.02 1.30 16 43 H 0.08 3.70 7.40 -2.40 -0.02 3.68 16 44 H 0.09 3.72 8.11 -2.40 -0.02 3.70 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -89.92 390.63 -1.16 -91.08 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.90 Total: 28.55 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 8.38 Total: 15.32 kcal Atomic # 7 Polarization: -137.58 SS G_CDS: -9.46 Total: -147.04 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.16 Total: -8.24 kcal Total: -89.92 -1.16 -91.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.566 kcal (2) G-P(sol) polarization free energy of solvation -89.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds