Wall clock time and date at job start Sat Apr 11 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31238 * 124.05966 * 2 1 4 4 N 1.27331 * 120.03605 * 180.37380 * 3 2 1 5 5 S 1.56638 * 109.74468 * 359.68995 * 4 3 2 6 6 C 1.38248 * 124.04964 * 179.82161 * 2 1 3 7 7 C 1.47164 * 128.47994 * 359.97089 * 6 2 1 8 8 O 1.21630 * 120.00094 * 5.11928 * 7 6 2 9 9 N 1.34784 * 120.00319 * 185.11453 * 7 6 2 10 10 C 1.46492 * 119.99592 * 4.76472 * 9 7 6 11 11 C 1.46499 * 119.99978 * 184.76739 * 9 7 6 12 12 C 1.53002 * 109.46958 * 270.00131 * 11 9 7 13 13 N 1.46894 * 109.47172 * 180.02562 * 12 11 9 14 14 C 1.46901 * 111.00344 * 169.99558 * 13 12 11 15 15 C 1.53231 * 109.34162 * 172.74438 * 14 13 12 16 16 N 1.47079 * 108.52345 * 53.83624 * 15 14 13 17 17 C 1.36929 * 120.88532 * 128.79282 * 16 15 14 18 18 H 1.08000 * 120.00050 * 333.86811 * 17 16 15 19 19 C 1.38812 * 120.00256 * 153.87938 * 17 16 15 20 20 N 1.31614 * 120.00457 * 163.80765 * 19 17 16 21 21 Si 1.86803 * 119.99711 * 343.80044 * 19 17 16 22 22 H 1.48493 * 109.46900 * 94.15686 * 21 19 17 23 23 H 1.48500 * 109.47285 * 214.15787 * 21 19 17 24 24 H 1.48503 * 109.47264 * 334.15552 * 21 19 17 25 25 C 1.47084 * 118.23136 * 308.81248 * 16 15 14 26 26 C 1.46908 * 111.00107 * 45.69506 * 13 12 11 27 27 H 1.09003 * 109.46881 * 270.18253 * 1 2 3 28 28 H 1.09002 * 109.47343 * 30.17937 * 1 2 3 29 29 H 1.09003 * 109.47628 * 150.18032 * 1 2 3 30 30 H 1.09001 * 109.47497 * 276.07658 * 10 9 7 31 31 H 1.09000 * 109.47544 * 36.08141 * 10 9 7 32 32 H 1.09007 * 109.46986 * 156.07915 * 10 9 7 33 33 H 1.08998 * 109.46979 * 150.00157 * 11 9 7 34 34 H 1.08996 * 109.47074 * 29.99597 * 11 9 7 35 35 H 1.08999 * 109.47676 * 59.99862 * 12 11 9 36 36 H 1.09007 * 109.46740 * 300.00104 * 12 11 9 37 37 H 1.09006 * 109.48728 * 52.78644 * 14 13 12 38 38 H 1.09001 * 109.49559 * 292.71232 * 14 13 12 39 39 H 1.09010 * 109.62855 * 173.54267 * 15 14 13 40 40 H 1.09000 * 109.63022 * 293.92652 * 15 14 13 41 41 H 0.97001 * 120.00373 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.62684 * 170.89515 * 25 16 15 43 43 H 1.08997 * 109.63048 * 291.47411 * 25 16 15 44 44 H 1.09005 * 109.48998 * 67.29747 * 26 13 12 45 45 H 1.08991 * 109.49368 * 307.21677 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5121 0.9979 -0.0072 5 16 3.9365 -0.5099 -0.0070 6 6 2.2810 -1.1455 0.0036 7 6 1.8392 -2.5492 0.0085 8 8 0.6559 -2.8147 -0.0841 9 7 2.7459 -3.5408 0.1156 10 6 4.1590 -3.2208 0.3317 11 6 2.3181 -4.9384 0.0157 12 6 1.9594 -5.4626 1.4076 13 7 1.5311 -6.8642 1.3075 14 6 1.4062 -7.4729 2.6386 15 6 0.7873 -8.8680 2.5027 16 7 1.5844 -9.6408 1.5379 17 6 2.0498 -10.8898 1.8514 18 1 2.2188 -11.1599 2.8834 19 6 2.3047 -11.8089 0.8428 20 7 3.0380 -12.8730 1.0921 21 14 1.6067 -11.5354 -0.8682 22 1 2.6145 -10.8402 -1.7085 23 1 1.2703 -12.8457 -1.4808 24 1 0.3805 -10.7030 -0.7754 25 6 1.8685 -9.0361 0.2276 26 6 2.4449 -7.6343 0.4531 27 1 -0.3633 0.0033 1.0277 28 1 -0.3634 0.8884 -0.5166 29 1 -0.3634 -0.8916 -0.5110 30 1 4.6342 -3.0086 -0.6260 31 1 4.2390 -2.3471 0.9785 32 1 4.6554 -4.0688 0.8036 33 1 3.1281 -5.5373 -0.4006 34 1 1.4454 -5.0057 -0.6339 35 1 1.1495 -4.8637 1.8239 36 1 2.8322 -5.3952 2.0572 37 1 0.7665 -6.8506 3.2645 38 1 2.3927 -7.5554 3.0949 39 1 0.7976 -9.3691 3.4707 40 1 -0.2392 -8.7801 2.1468 41 1 3.2159 -13.5154 0.3874 42 1 2.5938 -9.6482 -0.3086 43 1 0.9471 -8.9645 -0.3502 44 1 3.4170 -7.7146 0.9398 45 1 2.5586 -7.1291 -0.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267573216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:21 Heat of formation + Delta-G solvation = 96.514705 kcal Electronic energy + Delta-G solvation = -27365.828136 eV Core-core repulsion = 23548.149164 eV Total energy + Delta-G solvation = -3817.678972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36594 -40.23230 -38.52450 -36.30706 -34.68997 -33.69701 -31.83760 -30.67018 -30.07803 -28.63135 -27.55910 -27.17026 -26.01214 -23.71071 -23.39664 -22.54664 -21.24747 -19.65302 -19.49169 -19.11161 -17.62795 -17.03959 -16.64471 -16.59062 -15.81756 -15.49043 -14.97491 -14.78100 -14.44551 -14.23377 -14.11160 -13.95012 -13.87453 -13.78425 -13.49580 -13.30637 -13.17743 -12.78079 -12.65886 -12.46643 -12.18871 -11.97480 -11.86023 -11.79253 -11.25914 -10.94466 -10.68386 -10.55823 -10.35706 -10.33129 -10.19165 -10.12344 -10.01757 -9.83832 -9.42913 -9.14977 -8.72139 -8.06690 -6.98287 -5.94507 -3.32681 -0.69733 0.35513 1.06449 1.52826 2.33119 2.53175 3.29019 3.46582 3.48172 3.50387 3.89633 4.13958 4.19413 4.39918 4.50866 4.67449 4.80979 4.89652 4.94907 4.95869 5.05802 5.22238 5.30084 5.33350 5.34619 5.53286 5.64774 5.67952 5.73450 5.80408 5.86643 5.94471 6.01434 6.04932 6.16881 6.31176 6.51110 6.61992 6.73578 6.85270 7.25472 7.32480 7.37252 7.56430 7.91893 8.31017 8.90785 9.69938 10.08531 11.21545 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.002324 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.038074 B =12045.718647 C =12254.044662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.103 3.897 3 N -0.251 5.251 4 N -0.273 5.273 5 S 0.428 5.572 6 C -0.298 4.298 7 C 0.600 3.400 8 O -0.504 6.504 9 N -0.605 5.605 10 C 0.062 3.938 11 C 0.113 3.887 12 C 0.043 3.957 13 N -0.530 5.530 14 C 0.044 3.956 15 C 0.153 3.847 16 N -0.610 5.610 17 C -0.257 4.257 18 H 0.087 0.913 19 C 0.018 3.982 20 N -0.915 5.915 21 Si 0.889 3.111 22 H -0.291 1.291 23 H -0.305 1.305 24 H -0.265 1.265 25 C 0.127 3.873 26 C 0.034 3.966 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 25.792 -2.302 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 N -0.117 5.117 4 N -0.252 5.252 5 S 0.566 5.434 6 C -0.438 4.438 7 C 0.385 3.615 8 O -0.380 6.380 9 N -0.339 5.339 10 C -0.084 4.084 11 C -0.008 4.008 12 C -0.086 4.086 13 N -0.255 5.255 14 C -0.085 4.085 15 C 0.027 3.973 16 N -0.334 5.334 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.558 5.558 21 Si 0.720 3.280 22 H -0.219 1.219 23 H -0.234 1.234 24 H -0.190 1.190 25 C 0.001 3.999 26 C -0.095 4.095 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.753 26.619 -2.623 26.889 hybrid contribution -0.476 -0.445 -0.520 0.834 sum 2.277 26.174 -3.143 26.460 Atomic orbital electron populations 1.20571 0.83687 1.05233 1.04472 1.22994 1.00288 0.85244 0.95888 1.70751 0.97045 1.28048 1.15883 1.78689 1.09454 1.18434 1.18638 1.82908 1.09797 0.99477 1.51204 1.27716 0.98124 0.99942 1.18024 1.16502 0.85706 0.81930 0.77370 1.90854 1.15507 1.82600 1.49015 1.47669 1.07686 1.06804 1.71710 1.22128 0.81598 1.02528 1.02110 1.21858 1.02262 0.78172 0.98539 1.22420 0.99342 0.90913 0.95944 1.61979 1.49277 1.00279 1.13975 1.22632 0.99702 0.97513 0.88632 1.20989 0.93446 0.88952 0.93950 1.44401 1.60062 1.16277 1.12672 1.18956 1.37588 0.87136 0.94870 0.89580 1.25265 0.99068 0.95543 0.98148 1.69785 1.39169 1.13450 1.33444 0.86914 0.80207 0.75825 0.85017 1.21874 1.23380 1.18976 1.21514 0.98277 0.91048 0.89040 1.22802 0.94236 0.96264 0.96241 0.89252 0.89787 0.87813 0.90998 0.91515 0.88414 0.89246 0.88253 0.90468 0.95172 0.91504 0.94876 0.91609 0.95014 0.92790 0.90973 0.94411 0.94591 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 9.95 36.00 0.36 -0.28 16 2 C 0.10 1.01 7.00 -82.84 -0.58 0.43 16 3 N -0.25 -2.75 11.54 33.42 0.39 -2.36 16 4 N -0.27 -2.76 12.51 60.35 0.75 -2.01 16 5 S 0.43 2.97 19.03 -107.50 -2.05 0.93 16 6 C -0.30 -2.76 6.47 -35.96 -0.23 -2.99 16 7 C 0.60 6.37 7.65 -12.63 -0.10 6.27 16 8 O -0.50 -6.79 14.50 5.25 0.08 -6.71 16 9 N -0.60 -5.41 2.87 -182.95 -0.53 -5.94 16 10 C 0.06 0.33 8.95 59.84 0.54 0.87 16 11 C 0.11 1.19 4.60 -4.04 -0.02 1.18 16 12 C 0.04 0.53 5.59 -3.83 -0.02 0.51 16 13 N -0.53 -8.30 4.78 -234.32 -1.12 -9.42 16 14 C 0.04 0.72 5.58 -3.70 -0.02 0.70 16 15 C 0.15 2.99 6.69 -3.61 -0.02 2.97 16 16 N -0.61 -14.37 2.85 -172.01 -0.49 -14.86 16 17 C -0.26 -7.12 10.13 -15.06 -0.15 -7.27 16 18 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 19 C 0.02 0.52 5.33 -17.43 -0.09 0.42 16 20 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 21 Si 0.89 22.22 24.26 -169.99 -4.12 18.09 16 22 H -0.29 -6.93 6.70 56.52 0.38 -6.55 16 23 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.26 -6.50 6.01 56.52 0.34 -6.16 16 25 C 0.13 2.71 4.29 -3.60 -0.02 2.70 16 26 C 0.03 0.57 5.04 -3.70 -0.02 0.55 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.93 6.38 -51.93 -0.33 0.60 16 30 H 0.07 0.27 7.75 -51.93 -0.40 -0.13 16 31 H 0.07 0.31 5.09 -29.96 -0.15 0.16 16 32 H 0.10 0.44 8.03 -51.93 -0.42 0.02 16 33 H 0.09 0.84 6.11 -51.93 -0.32 0.52 16 34 H 0.10 1.21 7.49 -51.93 -0.39 0.83 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.03 0.35 8.08 -51.92 -0.42 -0.07 16 37 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.26 7.95 -51.92 -0.41 0.85 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.66 4.32 -51.93 -0.22 1.44 16 43 H 0.04 0.83 6.63 -51.93 -0.34 0.48 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.96 5.73 -51.93 -0.30 0.66 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -33.73 360.25 -7.57 -41.30 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.31 Total: -3.40 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.38 Total: 6.06 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.22 Total: -61.70 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.08 Total: -6.71 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.12 Total: 18.09 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.05 Total: 0.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.73 -7.57 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267573216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.816 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds