Wall clock time and date at job start Sat Apr 11 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31238 * 124.05966 * 2 1 4 4 N 1.27331 * 120.03605 * 180.37380 * 3 2 1 5 5 S 1.56638 * 109.74468 * 359.68995 * 4 3 2 6 6 C 1.38248 * 124.04964 * 179.82161 * 2 1 3 7 7 C 1.47164 * 128.47994 * 359.97089 * 6 2 1 8 8 O 1.21630 * 120.00094 * 5.11928 * 7 6 2 9 9 N 1.34784 * 120.00319 * 185.11453 * 7 6 2 10 10 C 1.46492 * 119.99592 * 4.76472 * 9 7 6 11 11 C 1.46499 * 119.99978 * 184.76739 * 9 7 6 12 12 C 1.53002 * 109.46958 * 270.00131 * 11 9 7 13 13 N 1.46894 * 109.47172 * 180.02562 * 12 11 9 14 14 C 1.46901 * 111.00344 * 169.99558 * 13 12 11 15 15 C 1.53231 * 109.34162 * 172.74438 * 14 13 12 16 16 N 1.47079 * 108.52345 * 53.83624 * 15 14 13 17 17 C 1.36929 * 120.88532 * 128.79282 * 16 15 14 18 18 H 1.08000 * 120.00050 * 333.86811 * 17 16 15 19 19 C 1.38812 * 120.00256 * 153.87938 * 17 16 15 20 20 N 1.31614 * 120.00457 * 163.80765 * 19 17 16 21 21 Si 1.86803 * 119.99711 * 343.80044 * 19 17 16 22 22 H 1.48493 * 109.46900 * 94.15686 * 21 19 17 23 23 H 1.48500 * 109.47285 * 214.15787 * 21 19 17 24 24 H 1.48503 * 109.47264 * 334.15552 * 21 19 17 25 25 C 1.47084 * 118.23136 * 308.81248 * 16 15 14 26 26 C 1.46908 * 111.00107 * 45.69506 * 13 12 11 27 27 H 1.09003 * 109.46881 * 270.18253 * 1 2 3 28 28 H 1.09002 * 109.47343 * 30.17937 * 1 2 3 29 29 H 1.09003 * 109.47628 * 150.18032 * 1 2 3 30 30 H 1.09001 * 109.47497 * 276.07658 * 10 9 7 31 31 H 1.09000 * 109.47544 * 36.08141 * 10 9 7 32 32 H 1.09007 * 109.46986 * 156.07915 * 10 9 7 33 33 H 1.08998 * 109.46979 * 150.00157 * 11 9 7 34 34 H 1.08996 * 109.47074 * 29.99597 * 11 9 7 35 35 H 1.08999 * 109.47676 * 59.99862 * 12 11 9 36 36 H 1.09007 * 109.46740 * 300.00104 * 12 11 9 37 37 H 1.09006 * 109.48728 * 52.78644 * 14 13 12 38 38 H 1.09001 * 109.49559 * 292.71232 * 14 13 12 39 39 H 1.09010 * 109.62855 * 173.54267 * 15 14 13 40 40 H 1.09000 * 109.63022 * 293.92652 * 15 14 13 41 41 H 0.97001 * 120.00373 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.62684 * 170.89515 * 25 16 15 43 43 H 1.08997 * 109.63048 * 291.47411 * 25 16 15 44 44 H 1.09005 * 109.48998 * 67.29747 * 26 13 12 45 45 H 1.08991 * 109.49368 * 307.21677 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5121 0.9979 -0.0072 5 16 3.9365 -0.5099 -0.0070 6 6 2.2810 -1.1455 0.0036 7 6 1.8392 -2.5492 0.0085 8 8 0.6559 -2.8147 -0.0841 9 7 2.7459 -3.5408 0.1156 10 6 4.1590 -3.2208 0.3317 11 6 2.3181 -4.9384 0.0157 12 6 1.9594 -5.4626 1.4076 13 7 1.5311 -6.8642 1.3075 14 6 1.4062 -7.4729 2.6386 15 6 0.7873 -8.8680 2.5027 16 7 1.5844 -9.6408 1.5379 17 6 2.0498 -10.8898 1.8514 18 1 2.2188 -11.1599 2.8834 19 6 2.3047 -11.8089 0.8428 20 7 3.0380 -12.8730 1.0921 21 14 1.6067 -11.5354 -0.8682 22 1 2.6145 -10.8402 -1.7085 23 1 1.2703 -12.8457 -1.4808 24 1 0.3805 -10.7030 -0.7754 25 6 1.8685 -9.0361 0.2276 26 6 2.4449 -7.6343 0.4531 27 1 -0.3633 0.0033 1.0277 28 1 -0.3634 0.8884 -0.5166 29 1 -0.3634 -0.8916 -0.5110 30 1 4.6342 -3.0086 -0.6260 31 1 4.2390 -2.3471 0.9785 32 1 4.6554 -4.0688 0.8036 33 1 3.1281 -5.5373 -0.4006 34 1 1.4454 -5.0057 -0.6339 35 1 1.1495 -4.8637 1.8239 36 1 2.8322 -5.3952 2.0572 37 1 0.7665 -6.8506 3.2645 38 1 2.3927 -7.5554 3.0949 39 1 0.7976 -9.3691 3.4707 40 1 -0.2392 -8.7801 2.1468 41 1 3.2159 -13.5154 0.3874 42 1 2.5938 -9.6482 -0.3086 43 1 0.9471 -8.9645 -0.3502 44 1 3.4170 -7.7146 0.9398 45 1 2.5586 -7.1291 -0.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267573216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:20 Heat of formation + Delta-G solvation = 70.673052 kcal Electronic energy + Delta-G solvation = -27366.948714 eV Core-core repulsion = 23548.149164 eV Total energy + Delta-G solvation = -3818.799550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05943 -41.02544 -39.86779 -37.28739 -36.10616 -34.41487 -33.70503 -32.15558 -31.20644 -29.44943 -28.38741 -28.02552 -27.10669 -25.13670 -24.85763 -23.69920 -22.29841 -21.03931 -20.38522 -19.75310 -18.81716 -18.32651 -17.74646 -17.35306 -17.15241 -16.43018 -16.10679 -16.05031 -15.78478 -15.51834 -15.37492 -15.28775 -14.83142 -14.38747 -14.33963 -14.26424 -14.06363 -13.87582 -13.77168 -13.60316 -13.48658 -13.23672 -13.14676 -12.76910 -12.58659 -12.27370 -12.15311 -12.03431 -11.73651 -11.55597 -11.38133 -11.30725 -11.03913 -10.87660 -10.76781 -10.74195 -9.88293 -9.35109 -8.88385 -8.14222 -5.48595 -1.37500 -0.27321 0.43213 0.81523 1.29906 1.44804 1.52961 1.61801 1.78706 2.42225 2.79672 2.93734 3.12039 3.27272 3.35196 3.51139 3.88379 3.94497 3.99478 4.14355 4.23841 4.24262 4.38281 4.40284 4.50039 4.54031 4.54791 4.64721 4.69070 4.70445 4.75126 4.79482 4.83910 4.93979 4.95178 5.03824 5.15916 5.28536 5.30001 5.82839 6.02511 6.08342 6.09810 6.20544 6.58801 6.81677 6.90048 7.61473 8.03410 9.05553 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.002324 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.038074 B =12045.718647 C =12254.044662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.094 3.906 3 N -0.278 5.278 4 N -0.309 5.309 5 S 0.525 5.475 6 C -0.318 4.318 7 C 0.598 3.402 8 O -0.541 6.541 9 N -0.600 5.600 10 C 0.050 3.950 11 C 0.119 3.881 12 C 0.051 3.949 13 N -0.540 5.540 14 C 0.056 3.944 15 C 0.147 3.853 16 N -0.625 5.625 17 C -0.245 4.245 18 H 0.053 0.947 19 C -0.041 4.041 20 N -0.963 5.963 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.316 1.316 24 H -0.258 1.258 25 C 0.119 3.881 26 C 0.046 3.954 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.033 0.967 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 28.086 -3.231 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 N -0.143 5.143 4 N -0.289 5.289 5 S 0.663 5.337 6 C -0.459 4.459 7 C 0.384 3.616 8 O -0.419 6.419 9 N -0.333 5.333 10 C -0.094 4.094 11 C -0.004 4.004 12 C -0.078 4.078 13 N -0.265 5.265 14 C -0.073 4.073 15 C 0.022 3.978 16 N -0.350 5.350 17 C -0.375 4.375 18 H 0.071 0.929 19 C -0.235 4.235 20 N -0.610 5.610 21 Si 0.783 3.217 22 H -0.197 1.197 23 H -0.246 1.246 24 H -0.183 1.183 25 C -0.006 4.006 26 C -0.083 4.083 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.760 28.996 -3.547 29.453 hybrid contribution -0.709 -1.165 -0.116 1.369 sum 3.052 27.830 -3.663 28.236 Atomic orbital electron populations 1.20568 0.83142 1.05163 1.04871 1.23222 1.00973 0.85393 0.95805 1.70804 0.97385 1.28791 1.17292 1.78407 1.09494 1.21232 1.19735 1.82465 1.06784 0.96576 1.47912 1.27687 1.00076 0.99261 1.18834 1.16665 0.85447 0.82556 0.76893 1.90835 1.17071 1.83216 1.50764 1.47685 1.08908 1.05822 1.70854 1.22456 0.79608 1.03595 1.03738 1.21713 1.02376 0.79227 0.97050 1.22369 0.99561 0.88425 0.97417 1.61900 1.49541 1.01751 1.13343 1.22445 0.99593 0.95749 0.89559 1.21151 0.93339 0.90509 0.92834 1.44551 1.60849 1.15381 1.14244 1.18892 1.36125 0.89012 0.93468 0.92920 1.25920 0.99810 0.95560 1.02237 1.69923 1.41316 1.14948 1.34782 0.85870 0.79975 0.75229 0.80618 1.19654 1.24580 1.18279 1.21563 0.97915 0.93441 0.87643 1.22616 0.93596 0.93892 0.98230 0.88626 0.88705 0.88906 0.88727 0.90817 0.86712 0.87411 0.89911 0.91194 0.93773 0.88941 0.95394 0.92103 0.94839 0.92992 0.92718 0.94613 0.94847 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.95 71.23 0.71 -0.50 16 2 C 0.09 1.76 7.00 42.65 0.30 2.06 16 3 N -0.28 -5.80 11.54 -48.19 -0.56 -6.36 16 4 N -0.31 -5.72 12.51 37.02 0.46 -5.26 16 5 S 0.53 5.72 19.03 -56.49 -1.07 4.64 16 6 C -0.32 -5.28 6.47 24.62 0.16 -5.12 16 7 C 0.60 11.53 7.65 86.59 0.66 12.19 16 8 O -0.54 -14.06 14.50 -4.13 -0.06 -14.12 16 9 N -0.60 -8.78 2.87 -850.98 -2.44 -11.22 16 10 C 0.05 0.32 8.95 127.77 1.14 1.46 16 11 C 0.12 2.09 4.60 86.38 0.40 2.49 16 12 C 0.05 1.09 5.59 86.31 0.48 1.57 16 13 N -0.54 -15.34 4.78 -895.25 -4.28 -19.61 16 14 C 0.06 1.69 5.58 86.38 0.48 2.17 16 15 C 0.15 5.62 6.69 86.35 0.58 6.20 16 16 N -0.62 -29.12 2.85 -698.13 -1.99 -31.11 16 17 C -0.25 -13.84 10.13 84.03 0.85 -12.99 16 18 H 0.05 3.25 8.05 -2.91 -0.02 3.23 16 19 C -0.04 -2.40 5.33 84.86 0.45 -1.95 16 20 N -0.96 -60.28 13.97 21.65 0.30 -59.98 16 21 Si 0.95 46.22 24.26 68.60 1.66 47.89 16 22 H -0.27 -12.05 6.70 99.48 0.67 -11.38 16 23 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 24 H -0.26 -12.08 6.01 99.48 0.60 -11.48 16 25 C 0.12 4.87 4.29 86.35 0.37 5.24 16 26 C 0.05 1.39 5.04 86.38 0.44 1.82 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.67 6.38 -2.39 -0.02 1.66 16 30 H 0.09 0.24 7.75 -2.39 -0.02 0.22 16 31 H 0.07 0.37 5.09 -16.35 -0.08 0.28 16 32 H 0.11 0.45 8.03 -2.38 -0.02 0.43 16 33 H 0.11 1.52 6.11 -2.39 -0.01 1.50 16 34 H 0.08 1.81 7.49 -2.39 -0.02 1.79 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 0.85 8.08 -2.38 -0.02 0.83 16 37 H 0.09 2.34 8.11 -2.38 -0.02 2.32 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 2.33 7.95 -2.38 -0.02 2.31 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.05 2.42 4.32 -2.38 -0.01 2.41 16 43 H 0.04 1.48 6.63 -2.39 -0.02 1.47 16 44 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.10 2.43 5.73 -2.39 -0.01 2.42 16 Total: -1.00 -75.37 360.25 -0.16 -75.53 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.79 Total: 4.97 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.02 Total: 14.64 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -8.50 Total: -133.55 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.06 Total: -14.12 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.66 Total: 47.89 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.07 Total: 4.64 kcal Total: -75.37 -0.16 -75.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267573216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.199 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds