Wall clock time and date at job start Sat Apr 11 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 C 1.53000 * 109.47133 * 240.00222 * 2 1 3 5 5 N 1.46892 * 109.46869 * 184.99893 * 4 2 1 6 6 C 1.46898 * 111.00093 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47677 * 179.97438 * 6 5 4 8 8 H 1.09001 * 110.21422 * 53.08283 * 7 6 5 9 9 C 1.54430 * 110.24489 * 175.00195 * 7 6 5 10 10 C 1.54584 * 101.66666 * 93.51391 * 9 7 6 11 11 C 1.51477 * 104.21662 * 24.96716 * 10 9 7 12 12 N 1.31165 * 141.94182 * 163.52964 * 11 10 9 13 13 C 1.33155 * 109.83959 * 180.18434 * 12 11 10 14 14 N 1.30649 * 108.94924 * 359.91913 * 13 12 11 15 15 N 1.34116 * 110.05030 * 343.52213 * 11 10 9 16 16 N 1.46504 * 109.47095 * 119.99748 * 2 1 3 17 17 C 1.34771 * 119.99917 * 275.00304 * 16 2 1 18 18 O 1.21281 * 120.00398 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99698 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99786 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00453 * 359.72125 * 21 20 19 23 23 C 1.38805 * 119.99580 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00030 * 359.71792 * 23 21 20 25 25 Si 1.86798 * 119.99665 * 179.72429 * 23 21 20 26 26 H 1.48493 * 109.47326 * 89.99906 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99656 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99367 * 25 23 21 29 29 H 1.08995 * 109.46870 * 299.99855 * 1 2 3 30 30 H 1.08998 * 109.46781 * 60.00058 * 1 2 3 31 31 H 1.08995 * 109.47066 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46619 * 305.00028 * 4 2 1 33 33 H 1.08999 * 109.46964 * 64.99521 * 4 2 1 34 34 H 1.00896 * 111.00431 * 303.95298 * 5 4 2 35 35 H 1.09002 * 109.47206 * 300.00409 * 6 5 4 36 36 H 1.09001 * 109.46817 * 59.99874 * 6 5 4 37 37 H 1.09005 * 110.98571 * 211.60274 * 9 7 6 38 38 H 1.08990 * 110.98894 * 335.37906 * 9 7 6 39 39 H 1.08998 * 110.48050 * 143.64477 * 10 9 7 40 40 H 1.08993 * 110.47765 * 266.15066 * 10 9 7 41 41 H 1.08007 * 125.52813 * 179.97438 * 13 12 11 42 42 H 0.97002 * 119.99546 * 94.99969 * 16 2 1 43 43 H 1.09002 * 109.47315 * 59.99436 * 19 17 16 44 44 H 1.09004 * 109.46949 * 300.00089 * 19 17 16 45 45 H 0.97000 * 119.99668 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0304 -1.5157 -2.3761 7 6 5.5546 -1.6055 -2.2793 8 1 5.8460 -2.0519 -1.3285 9 6 6.1167 -2.4359 -3.4538 10 6 6.4432 -1.3340 -4.4876 11 6 6.6558 -0.0896 -3.6504 12 7 7.1653 1.1178 -3.7058 13 6 7.0082 1.7287 -2.5331 14 7 6.3938 0.9193 -1.7120 15 7 6.1523 -0.2712 -2.4207 16 7 2.0184 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8582 1.1584 2.4117 19 6 2.6489 -0.7288 3.5878 20 16 2.7106 0.4345 4.9731 21 6 3.3137 -0.6309 6.2405 22 1 3.5183 -1.6684 6.0217 23 6 3.5197 -0.1380 7.5216 24 7 3.2699 1.1266 7.7883 25 14 4.1518 -1.2692 8.8670 26 1 5.6363 -1.2371 8.8840 27 1 3.6317 -0.8137 10.1813 28 1 3.6896 -2.6560 8.6054 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9280 0.0826 -1.0823 35 1 3.6095 -2.5198 -2.4295 36 1 3.7558 -0.9586 -3.2719 37 1 7.0181 -2.9719 -3.1567 38 1 5.3651 -3.1242 -3.8402 39 1 7.3508 -1.5835 -5.0372 40 1 5.6082 -1.1960 -5.1744 41 1 7.3348 2.7312 -2.2990 42 1 2.2491 -1.6318 1.1526 43 1 3.6480 -1.1214 3.3986 44 1 1.9759 -1.5506 3.8325 45 1 3.4143 1.4711 8.6835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268638043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:32 Heat of formation + Delta-G solvation = 36.838301 kcal Electronic energy + Delta-G solvation = -26511.775029 eV Core-core repulsion = 22691.508294 eV Total energy + Delta-G solvation = -3820.266735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.47758 -40.74612 -38.90778 -37.53712 -35.21435 -34.59267 -33.03342 -32.55036 -30.74363 -30.08114 -29.61471 -27.66886 -26.67408 -24.26352 -23.62314 -22.70043 -21.72482 -21.47540 -21.36645 -19.84191 -18.02666 -17.89334 -17.28109 -17.10185 -16.88944 -16.45934 -16.22210 -16.08550 -15.92730 -15.63214 -15.34151 -15.11112 -14.77964 -14.65295 -14.45749 -13.99899 -13.86472 -13.40578 -13.28227 -13.19717 -13.17505 -13.01734 -12.90341 -12.87335 -12.58983 -12.52522 -12.28914 -12.09868 -11.86171 -11.71530 -11.15200 -11.02356 -10.89955 -10.78855 -10.44722 -10.27984 -10.03940 -9.51927 -8.67392 -8.35358 -6.13513 0.61818 1.20793 1.26710 1.41552 1.46631 1.57317 1.67808 1.88986 2.26122 2.34029 2.63629 2.96268 2.98478 3.33037 3.44223 3.66039 3.68558 3.74835 3.98711 4.03894 4.11728 4.17108 4.29809 4.32888 4.36143 4.39279 4.49924 4.52945 4.56739 4.69703 4.70893 4.73999 4.85165 4.98486 5.02127 5.05979 5.23811 5.38507 5.40481 5.48005 5.56591 5.68704 5.94458 6.09961 6.18950 6.61065 7.05465 7.11686 7.33704 8.74066 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.002404 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.543341 B =11645.556814 C =12687.137470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.048 0.952 4 C 0.065 3.935 5 N -0.701 5.701 6 C 0.055 3.945 7 C 0.139 3.861 8 H 0.101 0.899 9 C -0.106 4.106 10 C -0.045 4.045 11 C 0.242 3.758 12 N -0.570 5.570 13 C 0.190 3.810 14 N -0.336 5.336 15 N -0.397 5.397 16 N -0.691 5.691 17 C 0.533 3.467 18 O -0.572 6.572 19 C -0.126 4.126 20 S -0.154 6.154 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.257 1.257 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.332 0.668 35 H 0.133 0.867 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.238 0.762 42 H 0.416 0.584 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -14.698 -31.225 34.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.066 0.934 4 C -0.064 4.064 5 N -0.331 5.331 6 C -0.074 4.074 7 C 0.037 3.963 8 H 0.119 0.881 9 C -0.145 4.145 10 C -0.085 4.085 11 C -0.035 4.035 12 N -0.299 5.299 13 C -0.113 4.113 14 N -0.164 5.164 15 N -0.188 5.188 16 N -0.345 5.345 17 C 0.319 3.681 18 O -0.451 6.451 19 C -0.277 4.277 20 S 0.073 5.927 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.180 1.180 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.169 0.831 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.254 0.746 42 H 0.253 0.747 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.551 -12.898 -30.000 32.692 hybrid contribution 0.804 -0.496 0.688 1.169 sum 2.355 -13.394 -29.312 32.313 Atomic orbital electron populations 1.22086 0.93842 1.03393 1.02113 1.20990 0.94674 0.96043 0.84487 0.93405 1.22222 0.87476 1.02168 0.94556 1.60481 1.05682 1.26323 1.40649 1.22505 0.91622 1.02237 0.91053 1.22614 0.93715 0.76318 1.03617 0.88082 1.23007 1.04706 0.96285 0.90505 1.21188 1.06569 0.84158 0.96547 1.26306 0.92560 0.95253 0.89391 1.70074 1.27853 1.06330 1.25676 1.26597 0.96705 1.01437 0.86519 1.78079 1.24128 0.93045 1.21103 1.51941 1.43380 1.12659 1.10805 1.45577 1.66752 1.14435 1.07688 1.20019 0.76726 0.86534 0.84835 1.90676 1.51222 1.17862 1.85343 1.23333 1.05124 1.03071 0.96157 1.85582 1.86622 1.17615 1.02892 1.23197 1.51010 0.98299 0.96795 0.89991 1.26171 0.95054 0.97289 1.00820 1.70196 1.46885 1.15494 1.22313 0.84928 0.78454 0.78196 0.76234 1.19375 1.20174 1.18035 0.94915 0.89863 0.90077 0.87169 0.92782 0.85058 0.84895 0.94234 0.87722 0.83148 0.85887 0.85490 0.74634 0.74726 0.87928 0.87334 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.49 71.99 0.68 -2.46 16 2 C 0.14 3.26 2.81 44.99 0.13 3.39 16 3 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 4 C 0.06 0.90 5.24 86.30 0.45 1.35 16 5 N -0.70 -11.56 6.22 -513.92 -3.20 -14.76 16 6 C 0.06 0.48 5.28 86.30 0.46 0.93 16 7 C 0.14 1.47 3.73 45.40 0.17 1.63 16 8 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 9 C -0.11 -0.09 6.70 31.62 0.21 0.12 16 10 C -0.05 -0.21 6.86 30.63 0.21 0.00 16 11 C 0.24 4.34 8.66 138.47 1.20 5.53 16 12 N -0.57 -13.75 11.20 -191.10 -2.14 -15.88 16 13 C 0.19 4.69 13.03 180.81 2.36 7.04 16 14 N -0.34 -9.30 12.51 -61.33 -0.77 -10.07 16 15 N -0.40 -7.90 4.18 -314.11 -1.31 -9.21 16 16 N -0.69 -18.38 4.80 -442.51 -2.12 -20.50 16 17 C 0.53 20.92 7.81 87.66 0.68 21.60 16 18 O -0.57 -28.08 15.53 -3.03 -0.05 -28.13 16 19 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 20 S -0.15 -8.94 20.57 -56.49 -1.16 -10.10 16 21 C -0.55 -32.12 9.50 67.96 0.65 -31.47 16 22 H 0.08 4.48 7.80 -2.92 -0.02 4.46 16 23 C 0.01 0.65 5.49 84.86 0.47 1.12 16 24 N -0.91 -57.55 13.22 21.65 0.29 -57.26 16 25 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.33 8.04 8.12 -89.70 -0.73 7.31 16 35 H 0.13 0.24 8.09 -2.39 -0.02 0.22 16 36 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H 0.15 -1.00 7.86 -2.39 -0.02 -1.02 16 39 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.24 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.42 8.47 8.60 -92.71 -0.80 7.68 16 43 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -92.12 391.99 -0.85 -92.97 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.51 Total: 22.34 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 8.10 Total: 3.95 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -9.26 Total: -127.69 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.10 kcal Total: -92.12 -0.85 -92.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268638043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.807 kcal (2) G-P(sol) polarization free energy of solvation -92.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds