Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 5 5 N 1.46895 * 109.47819 * 185.00126 * 4 2 1 6 6 C 1.46890 * 111.00488 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.47277 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.20974 * 304.53185 * 7 6 5 9 9 C 1.54436 * 110.24204 * 182.52198 * 7 6 5 10 10 C 1.54578 * 101.66428 * 266.50009 * 9 7 6 11 11 C 1.51482 * 104.21963 * 335.03772 * 10 9 7 12 12 N 1.31161 * 141.94083 * 196.56870 * 11 10 9 13 13 C 1.33164 * 109.83566 * 179.76536 * 12 11 10 14 14 N 1.30647 * 108.95202 * 0.03810 * 13 12 11 15 15 N 1.34123 * 110.04615 * 16.45596 * 11 10 9 16 16 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 17 17 C 1.34773 * 119.99969 * 274.72265 * 16 2 1 18 18 O 1.21281 * 120.00220 * 0.02562 * 17 16 2 19 19 C 1.50706 * 120.00080 * 180.02562 * 17 16 2 20 20 S 1.80989 * 109.47203 * 180.02562 * 19 17 16 21 21 C 1.76206 * 100.00010 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99621 * 359.97438 * 21 20 19 23 23 C 1.38794 * 119.99924 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46840 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47269 * 119.99682 * 25 23 21 28 28 H 1.48497 * 109.47235 * 239.99840 * 25 23 21 29 29 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 30 30 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47378 * 305.00625 * 4 2 1 33 33 H 1.09004 * 109.46895 * 64.99844 * 4 2 1 34 34 H 1.00900 * 110.99648 * 303.96355 * 5 4 2 35 35 H 1.08996 * 109.47333 * 299.99866 * 6 5 4 36 36 H 1.08997 * 109.47417 * 60.00044 * 6 5 4 37 37 H 1.08994 * 110.98677 * 24.58806 * 9 7 6 38 38 H 1.08994 * 110.98240 * 148.40337 * 9 7 6 39 39 H 1.09001 * 110.47535 * 216.36046 * 10 9 7 40 40 H 1.08993 * 110.48945 * 93.72292 * 10 9 7 41 41 H 1.08000 * 125.52569 * 180.02562 * 13 12 11 42 42 H 0.97005 * 119.99811 * 95.00317 * 16 2 1 43 43 H 1.09004 * 109.46762 * 300.00389 * 19 17 16 44 44 H 1.08998 * 109.46924 * 59.99727 * 19 17 16 45 45 H 0.97004 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5149 -2.3765 7 6 5.5547 -1.6058 -2.2790 8 1 5.9832 -0.6129 -2.1433 9 6 6.1326 -2.2705 -3.5475 10 6 6.2120 -3.7525 -3.1153 11 6 6.3111 -3.6948 -1.6048 12 7 6.6369 -4.4215 -0.5627 13 6 6.4895 -3.7063 0.5509 14 7 6.0662 -2.5114 0.2348 15 7 5.9412 -2.4826 -1.1658 16 7 2.0182 -0.6906 1.1963 17 6 2.1522 -0.0169 2.3558 18 8 1.8681 1.1610 2.4091 19 6 2.6550 -0.7271 3.5862 20 16 2.7227 0.4377 4.9699 21 6 3.3260 -0.6275 6.2373 22 1 3.5314 -1.6649 6.0183 23 6 3.5362 -0.1335 7.5172 24 7 3.2854 1.1308 7.7841 25 14 4.1751 -1.2629 8.8610 26 1 4.3766 -2.6261 8.3076 27 1 5.4677 -0.7411 9.3731 28 1 3.1896 -1.3191 9.9704 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9280 0.0825 -1.0822 35 1 3.6097 -2.5189 -2.4307 36 1 3.7560 -0.9571 -3.2718 37 1 5.4582 -2.1467 -4.3948 38 1 7.1227 -1.8773 -3.7777 39 1 7.0983 -4.2259 -3.5378 40 1 5.3118 -4.2871 -3.4182 41 1 6.6876 -4.0572 1.5529 42 1 2.2489 -1.6318 1.1527 43 1 1.9800 -1.5464 3.8341 44 1 3.6523 -1.1232 3.3951 45 1 3.4327 1.4761 8.6786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268638044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = 38.485006 kcal Electronic energy + Delta-G solvation = -26868.607506 eV Core-core repulsion = 23048.412177 eV Total energy + Delta-G solvation = -3820.195328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.33472 -40.73580 -38.86066 -37.49631 -35.18725 -34.60036 -32.93719 -32.51072 -30.63761 -30.06522 -29.56495 -27.67507 -26.62682 -24.25302 -23.52555 -22.68814 -21.68155 -21.42300 -21.28064 -19.83960 -17.93099 -17.85845 -17.32605 -16.99901 -16.89456 -16.44583 -16.17472 -15.99464 -15.88433 -15.43829 -15.25122 -15.12163 -14.78564 -14.59783 -14.52524 -14.01868 -13.89647 -13.36023 -13.26671 -13.17683 -13.11398 -13.03190 -12.92668 -12.87158 -12.58774 -12.43903 -12.21711 -12.05108 -11.82557 -11.70427 -11.17098 -10.90746 -10.88296 -10.64632 -10.32347 -10.29898 -10.02320 -9.35077 -8.67462 -8.36260 -6.13903 0.76946 1.26288 1.34176 1.39551 1.45481 1.57857 1.66986 2.00528 2.25309 2.35299 2.69998 2.97513 3.03264 3.32128 3.47020 3.65425 3.75073 3.81467 4.02454 4.04141 4.13525 4.20284 4.27743 4.35794 4.41076 4.46537 4.48991 4.51264 4.60578 4.70631 4.73769 4.74955 4.87767 4.99336 5.03919 5.08264 5.24936 5.40194 5.50240 5.58662 5.61162 5.79755 6.01383 6.18634 6.29612 6.56534 7.04908 7.25250 7.30677 8.73410 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.002970 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.499247 B = 9426.257104 C =11597.422837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.062 0.938 4 C 0.069 3.931 5 N -0.704 5.704 6 C 0.057 3.943 7 C 0.140 3.860 8 H 0.097 0.903 9 C -0.107 4.107 10 C -0.043 4.043 11 C 0.233 3.767 12 N -0.572 5.572 13 C 0.179 3.821 14 N -0.314 5.314 15 N -0.378 5.378 16 N -0.693 5.693 17 C 0.537 3.463 18 O -0.569 6.569 19 C -0.126 4.126 20 S -0.145 6.145 21 C -0.546 4.546 22 H 0.078 0.922 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.259 1.259 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.340 0.660 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.228 0.772 42 H 0.409 0.591 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -10.793 -33.042 34.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.060 4.060 5 N -0.335 5.335 6 C -0.073 4.073 7 C 0.038 3.962 8 H 0.115 0.885 9 C -0.146 4.146 10 C -0.083 4.083 11 C -0.043 4.043 12 N -0.301 5.301 13 C -0.124 4.124 14 N -0.141 5.141 15 N -0.169 5.169 16 N -0.345 5.345 17 C 0.323 3.677 18 O -0.448 6.448 19 C -0.278 4.278 20 S 0.082 5.918 21 C -0.694 4.694 22 H 0.096 0.904 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.166 0.834 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.244 0.756 42 H 0.245 0.755 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.795 -8.855 -31.894 33.149 hybrid contribution 0.706 -1.227 0.998 1.732 sum 2.500 -10.082 -30.896 32.595 Atomic orbital electron populations 1.22092 0.94206 1.02871 1.02348 1.21068 0.94432 0.96524 0.84205 0.91988 1.22145 0.87531 1.01193 0.95125 1.60261 1.05503 1.26376 1.41402 1.22401 0.91534 1.00745 0.92574 1.22534 0.96518 0.94677 0.82442 0.88514 1.22990 1.04825 0.91566 0.95183 1.21141 1.07165 0.99350 0.80644 1.26207 0.94518 0.84492 0.99128 1.70031 1.27927 1.34815 0.97362 1.26436 0.98360 0.87901 0.99677 1.78125 1.24570 1.22141 0.89307 1.51654 1.47675 1.13859 1.03710 1.45647 1.66556 1.14134 1.08139 1.19895 0.76646 0.86521 0.84687 1.90661 1.51400 1.17431 1.85287 1.23321 1.04698 1.03085 0.96663 1.85434 1.86570 1.17174 1.02635 1.23216 1.50963 0.98227 0.96989 0.90391 1.26127 0.95033 0.97273 1.00668 1.70187 1.46899 1.15348 1.22308 0.84907 0.77959 0.78140 0.76950 1.18259 1.19756 1.19613 0.94951 0.89232 0.91104 0.89608 0.90978 0.84165 0.90203 0.89227 0.83395 0.87768 0.86202 0.85690 0.75598 0.75536 0.88098 0.88532 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.49 71.98 0.68 -2.45 16 2 C 0.14 3.12 2.82 44.99 0.13 3.25 16 3 H 0.06 1.68 7.57 -2.39 -0.02 1.66 16 4 C 0.07 0.89 5.24 86.30 0.45 1.35 16 5 N -0.70 -10.52 6.19 -513.92 -3.18 -13.70 16 6 C 0.06 0.44 5.25 86.31 0.45 0.89 16 7 C 0.14 1.37 3.69 45.41 0.17 1.53 16 8 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 9 C -0.11 -0.07 6.70 31.62 0.21 0.14 16 10 C -0.04 -0.23 6.86 30.63 0.21 -0.02 16 11 C 0.23 4.45 8.66 138.47 1.20 5.65 16 12 N -0.57 -14.98 11.20 -191.09 -2.14 -17.12 16 13 C 0.18 4.91 13.03 180.81 2.36 7.27 16 14 N -0.31 -9.19 12.80 -61.33 -0.79 -9.98 16 15 N -0.38 -7.72 4.49 -314.10 -1.41 -9.13 16 16 N -0.69 -19.64 4.80 -442.54 -2.12 -21.77 16 17 C 0.54 21.66 7.82 87.66 0.69 22.35 16 18 O -0.57 -27.67 15.52 -3.03 -0.05 -27.72 16 19 C -0.13 -5.62 6.16 71.24 0.44 -5.18 16 20 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 21 C -0.55 -32.93 9.50 67.95 0.65 -32.28 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.81 5.49 84.86 0.47 1.27 16 24 N -0.91 -57.75 13.22 21.65 0.29 -57.46 16 25 Si 1.00 45.57 29.55 68.60 2.03 47.60 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.34 5.85 8.73 -89.69 -0.78 5.07 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.15 -0.99 7.89 -2.39 -0.02 -1.01 16 38 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.23 5.19 8.06 -2.91 -0.02 5.17 16 42 H 0.41 10.36 8.60 -92.70 -0.80 9.56 16 43 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 44 H 0.10 4.15 8.14 -2.40 -0.02 4.13 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -91.87 393.16 -1.01 -92.88 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.57 Total: 22.34 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 8.09 Total: 3.76 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -9.35 Total: -129.15 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -91.87 -1.01 -92.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268638044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.362 kcal (2) G-P(sol) polarization free energy of solvation -91.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds