Wall clock time and date at job start Sat Apr 11 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30826 * 125.96368 * 2 1 4 4 C 1.33237 * 109.83262 * 180.12557 * 3 2 1 5 5 C 1.50699 * 125.53122 * 179.85715 * 4 3 2 6 6 N 1.46906 * 109.46841 * 269.71387 * 5 4 3 7 7 C 1.46896 * 110.99731 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46886 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.99582 * 295.35861 * 8 7 6 10 10 C 1.54340 * 109.98830 * 174.32242 * 8 7 6 11 11 C 1.55158 * 103.01681 * 218.66410 * 10 8 7 12 12 C 1.54904 * 101.58211 * 35.31090 * 11 10 8 13 13 N 1.47014 * 109.88079 * 56.45728 * 8 7 6 14 14 C 1.34777 * 125.64925 * 298.38902 * 13 8 7 15 15 O 1.21278 * 119.99854 * 359.72596 * 14 13 8 16 16 C 1.50703 * 120.00161 * 179.71903 * 14 13 8 17 17 S 1.81002 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00092 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47405 * 90.00153 * 22 20 18 24 24 H 1.48505 * 109.47032 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47409 * 329.99921 * 22 20 18 26 26 N 1.30716 * 108.94707 * 359.58597 * 4 3 2 27 27 N 1.34427 * 125.95851 * 179.66829 * 2 1 3 28 28 H 0.96997 * 126.83042 * 359.97438 * 27 2 1 29 29 H 1.08993 * 109.47021 * 270.32716 * 1 2 3 30 30 H 1.08996 * 109.46727 * 30.33128 * 1 2 3 31 31 H 1.08999 * 109.46825 * 150.33036 * 1 2 3 32 32 H 1.08993 * 109.47440 * 149.71413 * 5 4 3 33 33 H 1.09002 * 109.47072 * 29.70925 * 5 4 3 34 34 H 1.00898 * 110.99589 * 303.94776 * 6 5 4 35 35 H 1.09004 * 109.47509 * 60.00375 * 7 6 5 36 36 H 1.09000 * 109.47686 * 299.99797 * 7 6 5 37 37 H 1.08997 * 110.84748 * 100.20041 * 10 8 7 38 38 H 1.08997 * 110.66777 * 337.04636 * 10 8 7 39 39 H 1.08998 * 111.00899 * 277.23065 * 11 10 8 40 40 H 1.09006 * 111.03474 * 153.39594 * 11 10 8 41 41 H 1.09004 * 110.36409 * 204.15096 * 12 11 10 42 42 H 1.08996 * 110.46297 * 81.87356 * 12 11 10 43 43 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 44 44 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 45 45 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6235 -0.0067 6 7 5.1222 1.9202 -1.3930 7 6 6.2737 2.8314 -1.4361 8 6 6.6446 3.1159 -2.8929 9 1 6.9824 2.1997 -3.3773 10 6 7.7597 4.1812 -2.9550 11 6 7.3536 5.0411 -4.1810 12 6 5.8081 5.0183 -4.0786 13 7 5.4811 3.6600 -3.6080 14 6 4.3077 3.0245 -3.7972 15 8 4.1487 1.9031 -3.3636 16 6 3.1932 3.7074 -4.5473 17 16 1.7598 2.6054 -4.6331 18 6 0.6426 3.6264 -5.5353 19 1 0.9478 4.6129 -5.8516 20 6 -0.6294 3.1623 -5.8404 21 7 -1.0009 1.9594 -5.4563 22 14 -1.8137 4.2445 -6.7975 23 1 -1.6448 3.9974 -8.2521 24 1 -3.2082 3.9245 -6.3998 25 1 -1.5296 5.6717 -6.5016 26 7 3.6195 -0.6168 0.0044 27 7 2.2964 -1.0881 0.0063 28 1 2.0094 -2.0146 0.0120 29 1 -0.3633 0.0059 1.0276 30 1 -0.3632 0.8870 -0.5190 31 1 -0.3633 -0.8929 -0.5087 32 1 5.5740 1.1535 0.5100 33 1 4.4699 2.5496 0.5023 34 1 5.3128 1.0718 -1.9048 35 1 7.1213 2.3701 -0.9292 36 1 6.0166 3.7658 -0.9372 37 1 8.7322 3.7158 -3.1156 38 1 7.7672 4.7837 -2.0467 39 1 7.6905 4.5811 -5.1099 40 1 7.7362 6.0578 -4.0898 41 1 5.3605 5.1993 -5.0559 42 1 5.4628 5.7620 -3.3604 43 1 3.5282 3.9475 -5.5564 44 1 2.9152 4.6250 -4.0288 45 1 -1.8901 1.6353 -5.6692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270007424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:46 Heat of formation + Delta-G solvation = 73.237107 kcal Electronic energy + Delta-G solvation = -27676.251901 eV Core-core repulsion = 23857.563537 eV Total energy + Delta-G solvation = -3818.688364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77712 -39.78691 -36.87750 -35.82871 -32.77573 -32.33483 -32.01822 -31.53973 -30.18592 -28.43862 -27.87411 -26.22219 -25.38407 -23.84321 -22.11965 -21.23102 -20.99399 -20.10060 -18.70484 -17.69280 -17.49003 -16.68037 -16.26353 -15.55643 -15.24458 -14.73442 -14.69299 -14.43641 -14.19503 -14.03115 -13.76278 -13.54419 -13.24361 -13.10394 -12.72283 -12.64897 -12.47019 -12.40962 -12.28733 -11.83048 -11.59876 -11.52513 -11.37661 -11.29159 -11.02602 -11.00067 -10.90845 -10.82357 -10.67915 -9.76883 -9.69158 -9.62826 -9.16979 -8.97393 -8.87030 -8.35294 -8.05472 -7.69885 -6.33265 -6.12661 -3.79003 1.87439 2.89525 3.12896 3.18344 3.27040 3.32430 3.37105 3.54001 3.82754 4.22448 4.30740 4.42063 4.49756 4.74214 4.80566 4.91184 5.05037 5.12688 5.22304 5.31141 5.32673 5.37496 5.46819 5.52285 5.56209 5.59895 5.62203 5.64796 5.75092 5.77464 5.84410 5.95578 6.00863 6.10620 6.14472 6.19837 6.34750 6.53434 6.70983 6.74650 7.25127 7.31658 7.68395 7.76381 8.06935 8.44439 8.46514 9.05049 9.33063 10.94604 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.004974 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.751906 B = 5627.930284 C = 9107.481579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.289 3.711 3 N -0.514 5.514 4 C 0.247 3.753 5 C 0.153 3.847 6 N -0.646 5.646 7 C 0.052 3.948 8 C 0.142 3.858 9 H 0.068 0.932 10 C -0.125 4.125 11 C -0.132 4.132 12 C 0.102 3.898 13 N -0.619 5.619 14 C 0.550 3.450 15 O -0.474 6.474 16 C -0.142 4.142 17 S -0.054 6.054 18 C -0.532 4.532 19 H 0.069 0.931 20 C 0.074 3.926 21 N -0.869 5.869 22 Si 0.915 3.085 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.273 1.273 26 N -0.326 5.326 27 N -0.487 5.487 28 H 0.435 0.565 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.357 0.643 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.204 1.170 10.117 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 N -0.243 5.243 4 C -0.036 4.036 5 C 0.022 3.978 6 N -0.283 5.283 7 C -0.079 4.079 8 C 0.038 3.962 9 H 0.086 0.914 10 C -0.164 4.164 11 C -0.170 4.170 12 C -0.022 4.022 13 N -0.358 5.358 14 C 0.337 3.663 15 O -0.344 6.344 16 C -0.293 4.293 17 S 0.173 5.827 18 C -0.680 4.680 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.156 5.156 27 N -0.205 5.205 28 H 0.280 0.720 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.830 -0.221 10.683 17.477 hybrid contribution -0.289 0.844 -0.972 1.319 sum 13.542 0.622 9.711 16.675 Atomic orbital electron populations 1.20396 0.83791 1.05821 1.03720 1.24398 0.96639 0.82638 0.95211 1.70370 1.01193 1.29088 1.23624 1.23861 0.93459 0.89477 0.96848 1.20059 0.89980 0.95608 0.92177 1.60882 1.37007 1.20649 1.09744 1.22424 0.91632 0.97710 0.96088 1.21460 0.86053 0.96879 0.91856 0.91385 1.22633 0.97633 0.97044 0.99044 1.22757 0.95251 1.00485 0.98504 1.22212 0.94893 0.85197 0.99917 1.48422 1.13489 1.16288 1.57554 1.19656 0.80824 0.86285 0.79537 1.90602 1.79244 1.18440 1.46106 1.23466 0.99872 1.04572 1.01383 1.85334 1.03896 1.20439 1.73058 1.22911 1.00821 1.03786 1.40491 0.91243 1.24935 0.97247 0.95406 0.95889 1.70028 1.19735 1.16507 1.44254 0.86233 0.79593 0.80294 0.79762 1.20423 1.20840 1.19742 1.77843 0.97099 1.12597 1.28051 1.47890 1.04292 1.09804 1.58522 0.72003 0.89590 0.87634 0.89993 0.94046 0.89127 0.82065 0.95169 0.90958 0.90360 0.90508 0.90714 0.90132 0.90751 0.91855 0.90247 0.89980 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.51 36.01 0.38 -0.57 16 2 C 0.29 4.67 8.24 -155.70 -1.28 3.39 16 3 N -0.51 -9.92 11.19 -8.16 -0.09 -10.01 16 4 C 0.25 4.44 7.65 -156.85 -1.20 3.24 16 5 C 0.15 2.32 6.31 -4.97 -0.03 2.29 16 6 N -0.65 -10.37 3.31 -115.05 -0.38 -10.75 16 7 C 0.05 0.64 5.28 -3.82 -0.02 0.62 16 8 C 0.14 1.72 3.28 -66.95 -0.22 1.50 16 9 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.13 -1.03 6.48 -24.89 -0.16 -1.19 16 11 C -0.13 -1.10 7.09 -24.58 -0.17 -1.27 16 12 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 13 N -0.62 -9.24 3.06 -163.01 -0.50 -9.74 16 14 C 0.55 10.93 7.43 -10.98 -0.08 10.84 16 15 O -0.47 -10.72 12.02 5.56 0.07 -10.66 16 16 C -0.14 -3.10 5.16 36.01 0.19 -2.91 16 17 S -0.05 -1.51 20.57 -107.50 -2.21 -3.72 16 18 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 N -0.33 -5.63 12.80 32.42 0.41 -5.22 16 27 N -0.49 -7.18 7.45 32.62 0.24 -6.94 16 28 H 0.44 4.64 8.96 -182.33 -1.63 3.01 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.36 6.32 7.38 -39.29 -0.29 6.03 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.63 7.85 -51.92 -0.41 1.22 16 44 H 0.08 1.74 8.14 -51.91 -0.42 1.31 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -37.63 384.94 -11.53 -49.17 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.16 Total: 7.04 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.43 Total: 3.90 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: 0.42 Total: -68.25 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.63 -11.53 -49.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270007424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.404 kcal (2) G-P(sol) polarization free energy of solvation -37.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds