Wall clock time and date at job start Sat Apr 11 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30826 * 125.96368 * 2 1 4 4 C 1.33237 * 109.83262 * 180.12557 * 3 2 1 5 5 C 1.50699 * 125.53122 * 179.85715 * 4 3 2 6 6 N 1.46906 * 109.46841 * 269.71387 * 5 4 3 7 7 C 1.46896 * 110.99731 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46886 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.99582 * 295.35861 * 8 7 6 10 10 C 1.54340 * 109.98830 * 174.32242 * 8 7 6 11 11 C 1.55158 * 103.01681 * 218.66410 * 10 8 7 12 12 C 1.54904 * 101.58211 * 35.31090 * 11 10 8 13 13 N 1.47014 * 109.88079 * 56.45728 * 8 7 6 14 14 C 1.34777 * 125.64925 * 298.38902 * 13 8 7 15 15 O 1.21278 * 119.99854 * 359.72596 * 14 13 8 16 16 C 1.50703 * 120.00161 * 179.71903 * 14 13 8 17 17 S 1.81002 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00092 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47405 * 90.00153 * 22 20 18 24 24 H 1.48505 * 109.47032 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47409 * 329.99921 * 22 20 18 26 26 N 1.30716 * 108.94707 * 359.58597 * 4 3 2 27 27 N 1.34427 * 125.95851 * 179.66829 * 2 1 3 28 28 H 0.96997 * 126.83042 * 359.97438 * 27 2 1 29 29 H 1.08993 * 109.47021 * 270.32716 * 1 2 3 30 30 H 1.08996 * 109.46727 * 30.33128 * 1 2 3 31 31 H 1.08999 * 109.46825 * 150.33036 * 1 2 3 32 32 H 1.08993 * 109.47440 * 149.71413 * 5 4 3 33 33 H 1.09002 * 109.47072 * 29.70925 * 5 4 3 34 34 H 1.00898 * 110.99589 * 303.94776 * 6 5 4 35 35 H 1.09004 * 109.47509 * 60.00375 * 7 6 5 36 36 H 1.09000 * 109.47686 * 299.99797 * 7 6 5 37 37 H 1.08997 * 110.84748 * 100.20041 * 10 8 7 38 38 H 1.08997 * 110.66777 * 337.04636 * 10 8 7 39 39 H 1.08998 * 111.00899 * 277.23065 * 11 10 8 40 40 H 1.09006 * 111.03474 * 153.39594 * 11 10 8 41 41 H 1.09004 * 110.36409 * 204.15096 * 12 11 10 42 42 H 1.08996 * 110.46297 * 81.87356 * 12 11 10 43 43 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 44 44 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 45 45 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6235 -0.0067 6 7 5.1222 1.9202 -1.3930 7 6 6.2737 2.8314 -1.4361 8 6 6.6446 3.1159 -2.8929 9 1 6.9824 2.1997 -3.3773 10 6 7.7597 4.1812 -2.9550 11 6 7.3536 5.0411 -4.1810 12 6 5.8081 5.0183 -4.0786 13 7 5.4811 3.6600 -3.6080 14 6 4.3077 3.0245 -3.7972 15 8 4.1487 1.9031 -3.3636 16 6 3.1932 3.7074 -4.5473 17 16 1.7598 2.6054 -4.6331 18 6 0.6426 3.6264 -5.5353 19 1 0.9478 4.6129 -5.8516 20 6 -0.6294 3.1623 -5.8404 21 7 -1.0009 1.9594 -5.4563 22 14 -1.8137 4.2445 -6.7975 23 1 -1.6448 3.9974 -8.2521 24 1 -3.2082 3.9245 -6.3998 25 1 -1.5296 5.6717 -6.5016 26 7 3.6195 -0.6168 0.0044 27 7 2.2964 -1.0881 0.0063 28 1 2.0094 -2.0146 0.0120 29 1 -0.3633 0.0059 1.0276 30 1 -0.3632 0.8870 -0.5190 31 1 -0.3633 -0.8929 -0.5087 32 1 5.5740 1.1535 0.5100 33 1 4.4699 2.5496 0.5023 34 1 5.3128 1.0718 -1.9048 35 1 7.1213 2.3701 -0.9292 36 1 6.0166 3.7658 -0.9372 37 1 8.7322 3.7158 -3.1156 38 1 7.7672 4.7837 -2.0467 39 1 7.6905 4.5811 -5.1099 40 1 7.7362 6.0578 -4.0898 41 1 5.3605 5.1993 -5.0559 42 1 5.4628 5.7620 -3.3604 43 1 3.5282 3.9475 -5.5564 44 1 2.9152 4.6250 -4.0288 45 1 -1.8901 1.6353 -5.6692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270007424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:46 Heat of formation + Delta-G solvation = 46.869958 kcal Electronic energy + Delta-G solvation = -27677.395266 eV Core-core repulsion = 23857.563537 eV Total energy + Delta-G solvation = -3819.831730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.04677 -40.97395 -38.20524 -36.94537 -34.54606 -33.95868 -33.27930 -32.74475 -31.20520 -29.98939 -28.99341 -27.61386 -27.30709 -24.90717 -23.25299 -22.36335 -21.95967 -21.35010 -20.15551 -19.37317 -18.86178 -18.02413 -17.41348 -16.85106 -16.79096 -16.49668 -16.12260 -15.73457 -15.68040 -15.31104 -14.97373 -14.78811 -14.58616 -14.19061 -14.00029 -13.84935 -13.63547 -13.55949 -13.46051 -13.14301 -13.01617 -12.93743 -12.84252 -12.75224 -12.57349 -12.44854 -12.04231 -11.90161 -11.66058 -11.53443 -11.10859 -11.07009 -10.95974 -10.45962 -10.38250 -10.18020 -9.53874 -8.86151 -8.56530 -8.30561 -6.05521 0.61048 1.30654 1.42176 1.48580 1.61233 1.76446 1.87897 2.00010 2.28213 2.37170 3.02481 3.10220 3.34368 3.42303 3.65471 3.70267 3.83545 3.92037 4.01229 4.16222 4.28546 4.33110 4.38209 4.43727 4.47701 4.52274 4.59712 4.66749 4.67241 4.77177 4.83341 4.91197 5.03354 5.06199 5.15515 5.20486 5.28905 5.42707 5.43907 5.45086 5.65316 6.18458 6.22861 6.24028 6.51977 6.73589 7.10319 7.19006 7.57679 8.78435 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.004974 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.751906 B = 5627.930284 C = 9107.481579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.562 5.562 4 C 0.233 3.767 5 C 0.157 3.843 6 N -0.668 5.668 7 C 0.054 3.946 8 C 0.136 3.864 9 H 0.057 0.943 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.089 3.911 13 N -0.613 5.613 14 C 0.546 3.454 15 O -0.509 6.509 16 C -0.118 4.118 17 S -0.133 6.133 18 C -0.549 4.549 19 H 0.074 0.926 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 0.994 3.006 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.262 1.262 26 N -0.343 5.343 27 N -0.476 5.476 28 H 0.452 0.548 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.343 0.657 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.571 2.929 10.068 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.292 5.292 4 C -0.051 4.051 5 C 0.026 3.974 6 N -0.304 5.304 7 C -0.076 4.076 8 C 0.032 3.968 9 H 0.075 0.925 10 C -0.150 4.150 11 C -0.158 4.158 12 C -0.033 4.033 13 N -0.350 5.350 14 C 0.332 3.668 15 O -0.382 6.382 16 C -0.270 4.270 17 S 0.094 5.906 18 C -0.697 4.697 19 H 0.092 0.908 20 C -0.187 4.187 21 N -0.544 5.544 22 Si 0.816 3.184 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.186 1.186 26 N -0.174 5.174 27 N -0.196 5.196 28 H 0.300 0.700 29 H 0.138 0.862 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.246 1.554 10.643 18.658 hybrid contribution -0.636 0.289 -0.934 1.166 sum 14.609 1.844 9.710 17.638 Atomic orbital electron populations 1.20540 0.81302 1.05581 1.05836 1.25024 0.97981 0.82430 0.94052 1.70346 1.02269 1.31052 1.25529 1.24393 0.93928 0.90066 0.96673 1.20115 0.89801 0.95344 0.92147 1.60803 1.39151 1.20449 1.09955 1.22495 0.91391 0.97174 0.96497 1.21762 0.85962 0.97916 0.91176 0.92497 1.22647 0.96792 0.95835 0.99762 1.22747 0.92180 1.02245 0.98608 1.22533 0.97734 0.83309 0.99766 1.48322 1.12544 1.17422 1.56703 1.19291 0.81915 0.86028 0.79578 1.90606 1.80227 1.19803 1.47592 1.23283 0.98027 1.03025 1.02616 1.85446 1.07667 1.23944 1.73508 1.23201 1.01576 1.03972 1.40972 0.90826 1.26028 0.99084 0.96915 0.96701 1.70179 1.20450 1.18463 1.45334 0.85027 0.76830 0.78385 0.78177 1.19357 1.19935 1.18588 1.77741 0.98437 1.12548 1.28635 1.47808 1.03475 1.10581 1.57770 0.69989 0.86172 0.90207 0.87752 0.91921 0.89100 0.83628 0.92487 0.90626 0.88049 0.88829 0.90646 0.87203 0.91267 0.90976 0.89150 0.89581 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 10.51 71.24 0.75 -1.05 16 2 C 0.28 9.40 8.24 138.23 1.14 10.54 16 3 N -0.56 -22.60 11.19 -179.73 -2.01 -24.61 16 4 C 0.23 8.66 7.65 138.63 1.06 9.72 16 5 C 0.16 4.83 6.31 85.56 0.54 5.37 16 6 N -0.67 -21.77 3.31 -517.92 -1.71 -23.48 16 7 C 0.05 1.25 5.28 86.31 0.46 1.70 16 8 C 0.14 3.04 3.28 45.35 0.15 3.19 16 9 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 10 C -0.11 -1.41 6.48 31.79 0.21 -1.21 16 11 C -0.12 -1.55 7.09 31.98 0.23 -1.33 16 12 C 0.09 1.87 6.69 86.85 0.58 2.45 16 13 N -0.61 -17.82 3.06 -788.04 -2.41 -20.23 16 14 C 0.55 22.15 7.43 87.66 0.65 22.80 16 15 O -0.51 -24.01 12.02 -3.02 -0.04 -24.05 16 16 C -0.12 -5.27 5.16 71.24 0.37 -4.90 16 17 S -0.13 -7.74 20.57 -56.49 -1.16 -8.91 16 18 C -0.55 -32.74 9.50 67.95 0.65 -32.09 16 19 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 20 C 0.02 1.03 5.49 84.86 0.47 1.49 16 21 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 22 Si 0.99 44.65 29.55 68.60 2.03 46.68 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 N -0.34 -12.16 12.80 -51.34 -0.66 -12.82 16 27 N -0.48 -14.29 7.45 -50.71 -0.38 -14.66 16 28 H 0.45 9.60 8.96 -213.10 -1.91 7.69 16 29 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.34 12.62 7.38 -89.70 -0.66 11.96 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.69 8.06 -2.39 -0.02 1.67 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.94 7.79 -2.39 -0.02 0.92 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 1.52 7.48 -2.38 -0.02 1.50 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 3.76 7.85 -2.39 -0.02 3.74 16 44 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 45 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -86.16 384.94 -0.37 -86.54 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -1.55 Total: 34.77 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 7.24 Total: 16.68 kcal Atomic # 7 Polarization: -144.84 SS G_CDS: -6.89 Total: -151.72 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.04 Total: -24.05 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.91 kcal Total: -86.16 -0.37 -86.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270007424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.406 kcal (2) G-P(sol) polarization free energy of solvation -86.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds