Wall clock time and date at job start Sat Apr 11 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 C 1.52995 * 109.47389 * 120.00399 * 2 1 3 5 5 H 1.08998 * 109.46762 * 300.00008 * 4 2 1 6 6 C 1.53000 * 109.47130 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46891 * 174.99756 * 6 4 2 8 8 N 1.46504 * 109.46902 * 179.97438 * 7 6 4 9 9 C 1.46497 * 119.99666 * 90.00073 * 8 7 6 10 10 C 1.34771 * 120.00286 * 270.00054 * 8 7 6 11 11 O 1.21526 * 119.99584 * 6.75478 * 10 8 7 12 12 C 1.48069 * 120.00499 * 186.75273 * 10 8 7 13 13 C 1.39864 * 120.92817 * 21.78939 * 12 10 8 14 14 C 1.38087 * 119.02093 * 179.97438 * 13 12 10 15 15 N 1.31844 * 120.93683 * 0.02562 * 14 13 12 16 16 C 1.31757 * 122.07661 * 359.97438 * 15 14 13 17 17 C 1.38362 * 120.86771 * 359.74274 * 16 15 14 18 18 Cl 1.73599 * 120.52088 * 180.28610 * 17 16 15 19 19 N 1.46502 * 109.47348 * 59.99589 * 4 2 1 20 20 C 1.36939 * 120.00132 * 275.00493 * 19 4 2 21 21 H 1.08000 * 120.00070 * 359.97438 * 20 19 4 22 22 C 1.38804 * 119.99714 * 179.97438 * 20 19 4 23 23 N 1.31619 * 120.00485 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47567 * 119.99908 * 24 22 20 27 27 H 1.48504 * 109.47334 * 239.99955 * 24 22 20 28 28 H 1.09008 * 109.47201 * 299.99687 * 1 2 3 29 29 H 1.08997 * 109.47613 * 59.99646 * 1 2 3 30 30 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46772 * 240.00628 * 2 1 3 32 32 H 1.09009 * 109.46868 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47136 * 300.00112 * 3 2 1 34 34 H 1.08997 * 109.47031 * 60.00643 * 3 2 1 35 35 H 1.09000 * 109.46983 * 295.00171 * 6 4 2 36 36 H 1.09006 * 109.47024 * 55.00184 * 6 4 2 37 37 H 1.09001 * 109.47174 * 300.00234 * 7 6 4 38 38 H 1.08996 * 109.47004 * 60.00420 * 7 6 4 39 39 H 1.09002 * 109.47548 * 83.76087 * 9 8 7 40 40 H 1.09003 * 109.47351 * 203.75586 * 9 8 7 41 41 H 1.09000 * 109.47723 * 323.75645 * 9 8 7 42 42 H 1.08003 * 120.49380 * 359.95825 * 13 12 10 43 43 H 1.07997 * 119.53420 * 179.97438 * 14 13 12 44 44 H 1.08001 * 119.56950 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00029 * 94.99697 * 19 4 2 46 46 H 0.97002 * 120.00066 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 3.5700 -0.7218 1.2487 7 6 4.0801 -1.3315 2.5561 8 7 5.5451 -1.3325 2.5554 9 6 6.2786 -0.1831 3.0910 10 6 6.2181 -2.3909 2.0622 11 8 5.6158 -3.2888 1.5073 12 6 7.6911 -2.4598 2.1963 13 6 8.3585 -1.7233 3.1804 14 6 9.7332 -1.8174 3.2706 15 7 10.4155 -2.5869 2.4455 16 6 9.8280 -3.2975 1.5043 17 6 8.4538 -3.2678 1.3459 18 17 7.6885 -4.2135 0.1075 19 7 1.5517 -2.1025 1.2492 20 6 0.3101 -2.3898 1.7503 21 1 -0.3090 -1.5982 2.1460 22 6 -0.1527 -3.6984 1.7498 23 7 0.6014 -4.6631 1.2672 24 14 -1.8461 -4.0904 2.4342 25 1 -2.4887 -2.8396 2.9117 26 1 -2.6818 -4.7000 1.3687 27 1 -1.7144 -5.0430 3.5658 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9329 -1.3114 0.4069 36 1 3.9337 0.3019 1.1590 37 1 3.7171 -0.7418 3.3979 38 1 3.7165 -2.3551 2.6458 39 1 6.3640 -0.2787 4.1735 40 1 7.2747 -0.1499 2.6497 41 1 5.7431 0.7348 2.8485 42 1 7.8069 -1.0902 3.8596 43 1 10.2570 -1.2520 4.0271 44 1 10.4265 -3.9147 0.8507 45 1 2.1077 -2.8135 0.8940 46 1 0.2778 -5.5775 1.2665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276138152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:49 Heat of formation + Delta-G solvation = 4.920250 kcal Electronic energy + Delta-G solvation = -27679.404192 eV Core-core repulsion = 23823.416930 eV Total energy + Delta-G solvation = -3855.987263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92292 -40.29421 -38.85331 -37.67902 -36.80234 -34.90864 -34.22689 -32.67414 -32.17581 -31.24376 -28.27818 -27.73717 -27.17360 -25.55677 -24.65144 -24.32850 -22.67716 -20.98115 -20.67041 -19.13205 -18.69961 -18.02807 -17.53997 -16.90469 -16.80949 -16.50321 -16.24033 -15.71208 -15.43755 -15.29156 -15.12022 -15.04303 -14.92118 -14.28597 -14.24347 -13.98553 -13.53162 -13.51785 -13.05577 -12.98827 -12.97122 -12.88702 -12.73092 -12.57088 -12.43295 -12.26986 -12.16172 -11.96279 -11.73764 -11.65989 -11.41945 -11.28433 -11.15625 -10.90303 -10.81131 -10.44028 -10.04566 -9.65752 -8.88369 -7.84356 -5.11220 -0.52442 -0.17754 0.99172 1.46214 1.46760 1.56229 1.72689 1.87680 2.59660 2.60288 3.22790 3.37119 3.47563 3.55518 3.69949 3.92637 3.97211 4.06215 4.19784 4.21394 4.26917 4.45047 4.48135 4.49086 4.59343 4.63315 4.68993 4.76032 4.77289 4.81966 4.89432 4.96184 5.05401 5.16050 5.20211 5.28730 5.36036 5.38390 5.44584 5.55273 5.59466 5.70250 5.79714 6.30757 6.35697 6.68056 7.06557 7.41266 8.19913 8.42116 9.39362 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.003172 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.310332 B = 8825.850430 C = 9758.902009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.182 3.818 5 H 0.054 0.946 6 C -0.121 4.121 7 C 0.130 3.870 8 N -0.602 5.602 9 C 0.049 3.951 10 C 0.533 3.467 11 O -0.548 6.548 12 C -0.095 4.095 13 C -0.133 4.133 14 C 0.105 3.895 15 N -0.469 5.469 16 C 0.109 3.891 17 C -0.067 4.067 18 Cl -0.046 7.046 19 N -0.732 5.732 20 C -0.208 4.208 21 H 0.081 0.919 22 C -0.084 4.084 23 N -0.973 5.973 24 Si 0.959 3.041 25 H -0.261 1.261 26 H -0.302 1.302 27 H -0.300 1.300 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.199 0.801 43 H 0.213 0.787 44 H 0.185 0.815 45 H 0.367 0.633 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.640 15.524 5.512 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.192 4.192 4 C 0.073 3.927 5 H 0.071 0.929 6 C -0.160 4.160 7 C 0.007 3.993 8 N -0.334 5.334 9 C -0.092 4.092 10 C 0.321 3.679 11 O -0.425 6.425 12 C -0.107 4.107 13 C -0.152 4.152 14 C -0.051 4.051 15 N -0.178 5.178 16 C -0.048 4.048 17 C -0.097 4.097 18 Cl -0.017 7.017 19 N -0.371 5.371 20 C -0.340 4.340 21 H 0.099 0.901 22 C -0.275 4.275 23 N -0.626 5.626 24 Si 0.790 3.210 25 H -0.185 1.185 26 H -0.230 1.230 27 H -0.228 1.228 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.215 0.785 43 H 0.229 0.771 44 H 0.202 0.798 45 H 0.198 0.802 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.957 14.994 5.304 26.308 hybrid contribution -2.142 -1.564 -0.558 2.711 sum 18.814 13.429 4.746 23.598 Atomic orbital electron populations 1.21747 0.96046 1.01395 1.00150 1.21675 0.95951 0.96736 0.98749 1.21813 1.01084 0.94334 1.01995 1.20455 0.91520 0.84995 0.95732 0.92850 1.22068 0.95605 1.01353 0.96943 1.21355 0.77654 1.01760 0.98507 1.47850 1.06954 1.18070 1.60568 1.22826 0.98222 0.87843 1.00274 1.18646 0.87165 0.82831 0.79294 1.90946 1.69934 1.39544 1.42055 1.20357 0.93330 0.98840 0.98154 1.23562 0.96736 0.97847 0.97097 1.23647 0.90914 0.94156 0.96432 1.67779 1.40645 1.05837 1.03553 1.23046 0.88768 0.96910 0.96085 1.22510 0.95085 0.97487 0.94657 1.98444 1.81764 1.70248 1.51280 1.42734 1.17059 1.04014 1.73288 1.19574 0.93220 0.92064 1.29126 0.90107 1.25461 1.01620 0.96288 1.04136 1.69884 1.38476 0.99623 1.54568 0.85253 0.80801 0.77962 0.76964 1.18472 1.22963 1.22805 0.93225 0.93355 0.93807 0.94590 0.91772 0.92690 0.91824 0.95011 0.88416 0.88111 0.93540 0.88839 0.88527 0.88913 0.78480 0.77053 0.79765 0.80187 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.26 71.98 0.59 -4.38 16 2 C -0.11 -3.78 2.69 -10.80 -0.03 -3.81 16 3 C -0.13 -3.29 8.85 71.98 0.64 -2.66 16 4 C 0.18 6.82 2.02 44.99 0.09 6.91 16 5 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 6 C -0.12 -3.86 4.86 30.59 0.15 -3.71 16 7 C 0.13 4.04 5.27 86.38 0.46 4.49 16 8 N -0.60 -14.98 2.87 -849.94 -2.44 -17.42 16 9 C 0.05 0.56 8.69 127.77 1.11 1.67 16 10 C 0.53 16.76 7.44 86.85 0.65 17.41 16 11 O -0.55 -23.66 14.24 -3.80 -0.05 -23.71 16 12 C -0.10 -2.26 5.56 -19.87 -0.11 -2.37 16 13 C -0.13 -1.77 7.67 22.63 0.17 -1.60 16 14 C 0.11 1.18 11.17 84.65 0.95 2.13 16 15 N -0.47 -7.96 10.33 -195.91 -2.02 -9.99 16 16 C 0.11 2.11 10.99 84.73 0.93 3.04 16 17 C -0.07 -1.68 6.37 22.71 0.14 -1.54 16 18 Cl -0.05 -1.43 26.49 -2.72 -0.07 -1.50 16 19 N -0.73 -36.87 4.45 -322.95 -1.44 -38.31 16 20 C -0.21 -11.31 7.57 84.03 0.64 -10.68 16 21 H 0.08 4.17 7.40 -2.91 -0.02 4.15 16 22 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 23 N -0.97 -62.91 13.06 21.65 0.28 -62.63 16 24 Si 0.96 47.47 29.55 68.60 2.03 49.50 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 28 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.97 6.01 -2.39 -0.01 1.95 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.38 6.32 -2.38 -0.02 1.36 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 2.36 6.18 -2.38 -0.01 2.34 16 37 H 0.10 2.56 8.07 -2.39 -0.02 2.54 16 38 H 0.05 1.99 7.13 -2.39 -0.02 1.98 16 39 H 0.09 0.56 7.18 -2.39 -0.02 0.54 16 40 H 0.10 0.84 5.09 -2.39 -0.01 0.83 16 41 H 0.09 0.79 8.12 -2.39 -0.02 0.78 16 42 H 0.20 1.27 4.38 -2.91 -0.01 1.26 16 43 H 0.21 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.37 21.33 7.80 -92.71 -0.72 20.61 16 46 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -80.44 380.26 3.40 -77.04 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.28 Total: 26.57 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 6.84 Total: 0.45 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.62 Total: -128.35 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -80.44 3.40 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276138152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.960 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds