Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47295 * 2 1 4 4 C 1.53001 * 109.46848 * 119.99866 * 2 1 3 5 5 H 1.08996 * 109.47731 * 60.00173 * 4 2 1 6 6 C 1.53006 * 109.47119 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47354 * 184.99940 * 6 4 2 8 8 N 1.46501 * 109.47433 * 180.02562 * 7 6 4 9 9 C 1.46506 * 119.99938 * 89.99527 * 8 7 6 10 10 C 1.34777 * 120.00021 * 270.00364 * 8 7 6 11 11 O 1.21519 * 119.99896 * 6.74718 * 10 8 7 12 12 C 1.48073 * 119.99957 * 186.74904 * 10 8 7 13 13 C 1.39867 * 120.93137 * 21.78956 * 12 10 8 14 14 C 1.38080 * 119.01580 * 179.97438 * 13 12 10 15 15 N 1.31851 * 120.94373 * 0.02562 * 14 13 12 16 16 C 1.31754 * 122.07047 * 359.97438 * 15 14 13 17 17 C 1.38366 * 120.87008 * 359.73487 * 16 15 14 18 18 Cl 1.73602 * 120.51735 * 180.26661 * 17 16 15 19 19 N 1.46504 * 109.47389 * 299.99578 * 4 2 1 20 20 C 1.36930 * 119.99573 * 85.00218 * 19 4 2 21 21 H 1.08000 * 120.00356 * 359.97438 * 20 19 4 22 22 C 1.38814 * 119.99809 * 179.73020 * 20 19 4 23 23 N 1.31612 * 120.00051 * 0.26897 * 22 20 19 24 24 Si 1.86807 * 119.99884 * 180.27610 * 22 20 19 25 25 H 1.48496 * 109.47171 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46933 * 119.99836 * 24 22 20 27 27 H 1.48500 * 109.46596 * 239.99666 * 24 22 20 28 28 H 1.09002 * 109.46620 * 300.00322 * 1 2 3 29 29 H 1.09000 * 109.46681 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47196 * 239.99222 * 2 1 3 32 32 H 1.09006 * 109.47058 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46621 * 299.99509 * 3 2 1 34 34 H 1.08996 * 109.47300 * 59.99897 * 3 2 1 35 35 H 1.08999 * 109.47103 * 305.00235 * 6 4 2 36 36 H 1.09003 * 109.46895 * 65.00255 * 6 4 2 37 37 H 1.08999 * 109.47257 * 300.00201 * 7 6 4 38 38 H 1.08999 * 109.47346 * 59.99747 * 7 6 4 39 39 H 1.09000 * 109.46621 * 83.76003 * 9 8 7 40 40 H 1.09004 * 109.46750 * 203.75577 * 9 8 7 41 41 H 1.08992 * 109.47438 * 323.76026 * 9 8 7 42 42 H 1.08000 * 120.49015 * 359.95203 * 13 12 10 43 43 H 1.08001 * 119.53169 * 180.02562 * 14 13 12 44 44 H 1.08005 * 119.56566 * 179.97438 * 16 15 14 45 45 H 0.97001 * 120.00103 * 265.00648 * 19 4 2 46 46 H 0.97001 * 120.00021 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2494 6 6 3.5700 -0.7218 1.2490 7 6 4.0799 -1.5492 2.4307 8 7 5.5450 -1.5492 2.4308 9 6 6.2775 -0.5099 3.1585 10 6 6.2188 -2.5054 1.7613 11 8 5.6176 -3.2935 1.0584 12 6 7.6919 -2.5955 1.8824 13 6 8.3583 -2.0410 2.9799 14 6 9.7330 -2.1485 3.0530 15 7 10.4163 -2.7623 2.1071 16 6 9.8297 -3.2988 1.0564 17 6 8.4555 -3.2430 0.9049 18 17 7.6915 -3.9590 -0.4798 19 7 1.5517 -0.0306 2.4455 20 6 0.3102 -0.3209 2.9448 21 1 -0.3092 -1.0588 2.4566 22 6 -0.1502 0.3294 4.0815 23 7 0.6044 1.2289 4.6761 24 14 -1.8408 -0.0723 4.7671 25 1 -2.4844 -1.1095 3.9214 26 1 -1.7038 -0.5802 6.1558 27 1 -2.6783 1.1540 4.7689 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 3.9330 -1.1564 0.3176 36 1 3.9337 0.3018 1.3384 37 1 3.7169 -1.1146 3.3620 38 1 3.7162 -2.5728 2.3414 39 1 6.3622 -0.7923 4.2078 40 1 7.2738 -0.4000 2.7301 41 1 5.7414 0.4358 3.0789 42 1 7.8059 -1.5359 3.7585 43 1 10.2560 -1.7237 3.8970 44 1 10.4290 -3.7919 0.3053 45 1 2.1078 0.6325 2.8837 46 1 0.2828 1.6831 5.4706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276138153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 24.426747 kcal Electronic energy + Delta-G solvation = -27590.402536 eV Core-core repulsion = 23735.261138 eV Total energy + Delta-G solvation = -3855.141398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10420 -39.35614 -37.44321 -36.82270 -35.71461 -33.33846 -32.84698 -31.56523 -31.09894 -29.47030 -27.33255 -26.52437 -25.92829 -24.24190 -23.85570 -23.07934 -21.48123 -19.97845 -18.65742 -17.86176 -17.26480 -17.13622 -16.79409 -15.94577 -15.57222 -15.41524 -14.82888 -14.59974 -14.39708 -14.22338 -13.85679 -13.61265 -13.41628 -13.21735 -13.02813 -12.82549 -12.50781 -12.29959 -12.20371 -11.83745 -11.58007 -11.37291 -11.30382 -11.07118 -10.89744 -10.76396 -10.53716 -10.45579 -10.33476 -10.17317 -10.11743 -10.00258 -9.78543 -9.55989 -9.40630 -9.31581 -8.91321 -8.58286 -6.93842 -5.78313 -3.04379 0.26436 0.49300 1.77786 2.64572 2.84476 3.33647 3.41457 3.49115 3.49722 3.95361 4.06233 4.23866 4.38535 4.58985 4.72181 4.89162 5.12157 5.17117 5.21073 5.38317 5.40182 5.45016 5.52335 5.58358 5.72743 5.75032 5.88487 5.97070 6.01103 6.06087 6.12657 6.31993 6.35885 6.42507 6.53392 6.64102 6.72934 6.77999 6.90588 6.92709 7.11428 7.29768 7.34952 7.39712 7.72820 8.02484 8.40825 9.52637 10.09793 10.45709 11.44408 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002817 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.192122 B = 9936.098010 C =10792.694052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.183 3.817 5 H 0.048 0.952 6 C -0.134 4.134 7 C 0.121 3.879 8 N -0.602 5.602 9 C 0.059 3.941 10 C 0.547 3.453 11 O -0.506 6.506 12 C -0.078 4.078 13 C -0.147 4.147 14 C 0.094 3.906 15 N -0.458 5.458 16 C 0.106 3.894 17 C -0.046 4.046 18 Cl -0.020 7.020 19 N -0.718 5.718 20 C -0.226 4.226 21 H 0.072 0.928 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.899 3.101 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.382 0.618 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.006 -4.655 -5.329 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.194 4.194 4 C 0.072 3.928 5 H 0.066 0.934 6 C -0.173 4.173 7 C 0.001 3.999 8 N -0.334 5.334 9 C -0.083 4.083 10 C 0.333 3.667 11 O -0.381 6.381 12 C -0.090 4.090 13 C -0.167 4.167 14 C -0.063 4.063 15 N -0.167 5.167 16 C -0.052 4.052 17 C -0.076 4.076 18 Cl 0.010 6.990 19 N -0.360 5.360 20 C -0.357 4.357 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.731 3.269 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.221 1.221 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.187 0.813 45 H 0.216 0.784 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.302 -5.274 -5.698 20.805 hybrid contribution -1.738 0.208 0.426 1.801 sum 17.564 -5.067 -5.272 19.025 Atomic orbital electron populations 1.21851 0.95407 1.00755 1.01841 1.21664 0.96465 0.96461 0.98427 1.21737 0.99361 0.96964 1.01340 1.20215 0.89770 0.95306 0.87490 0.93383 1.22165 0.97609 0.99739 0.97776 1.21676 0.75504 1.02084 1.00686 1.47855 1.08103 1.27087 1.50362 1.22453 0.97629 0.92112 0.96145 1.18042 0.85799 0.82061 0.80776 1.90857 1.68847 1.41309 1.37052 1.20404 0.95114 0.98394 0.95041 1.23279 0.96390 0.98538 0.98530 1.22919 0.91132 0.95136 0.97097 1.67674 1.40353 1.07383 1.01279 1.22839 0.89661 0.96698 0.96006 1.22286 0.94205 0.99020 0.92099 1.98437 1.81308 1.80790 1.38497 1.42427 1.17872 1.47409 1.28284 1.19266 0.92782 1.17442 1.06190 0.91038 1.24665 0.98234 0.99558 0.98576 1.69647 1.36838 1.29594 1.22235 0.86228 0.84521 0.77397 0.78784 1.20609 1.22065 1.22075 0.89459 0.95274 0.94208 0.93661 0.94046 0.94687 0.91366 0.92077 0.91944 0.88612 0.90095 0.91618 0.90204 0.90116 0.81392 0.81368 0.81293 0.78421 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.26 37.16 0.31 -2.35 16 2 C -0.11 -1.94 2.80 -90.62 -0.25 -2.19 16 3 C -0.14 -2.33 8.68 37.16 0.32 -2.01 16 4 C 0.18 3.44 2.19 -67.92 -0.15 3.29 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C -0.13 -2.16 4.57 -26.73 -0.12 -2.28 16 7 C 0.12 1.90 5.27 -4.04 -0.02 1.87 16 8 N -0.60 -7.82 2.87 -182.61 -0.52 -8.35 16 9 C 0.06 0.55 8.69 59.85 0.52 1.07 16 10 C 0.55 7.72 7.44 -12.23 -0.09 7.63 16 11 O -0.51 -8.72 14.24 5.35 0.08 -8.64 16 12 C -0.08 -0.89 5.56 -104.62 -0.58 -1.47 16 13 C -0.15 -1.22 7.67 -39.03 -0.30 -1.52 16 14 C 0.09 0.71 11.17 -17.60 -0.20 0.51 16 15 N -0.46 -4.32 10.33 -13.27 -0.14 -4.45 16 16 C 0.11 0.99 10.99 -17.54 -0.19 0.80 16 17 C -0.05 -0.51 6.37 -38.90 -0.25 -0.76 16 18 Cl -0.02 -0.24 26.49 -51.86 -1.37 -1.61 16 19 N -0.72 -16.05 3.69 -53.42 -0.20 -16.24 16 20 C -0.23 -5.73 7.57 -15.06 -0.11 -5.84 16 21 H 0.07 1.82 7.39 -52.49 -0.39 1.43 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -26.41 13.06 55.49 0.72 -25.68 16 24 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H 0.09 1.90 6.01 -51.93 -0.31 1.59 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.65 6.55 -51.93 -0.34 0.31 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.99 6.71 -51.93 -0.35 0.64 16 37 H 0.10 1.62 7.68 -51.93 -0.40 1.22 16 38 H 0.08 1.39 7.53 -51.93 -0.39 1.00 16 39 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 40 H 0.08 0.60 5.08 -51.93 -0.26 0.33 16 41 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.17 1.05 4.38 -52.49 -0.23 0.82 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.38 9.07 7.80 -40.82 -0.32 8.75 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -30.32 379.54 -8.64 -38.96 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.69 Total: 7.41 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.21 Total: -3.75 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.13 Total: -54.73 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.37 Total: -1.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.32 -8.64 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276138153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.389 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds