Wall clock time and date at job start Sat Apr 11 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47295 * 2 1 4 4 C 1.53001 * 109.46848 * 119.99866 * 2 1 3 5 5 H 1.08996 * 109.47731 * 60.00173 * 4 2 1 6 6 C 1.53006 * 109.47119 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47354 * 184.99940 * 6 4 2 8 8 N 1.46501 * 109.47433 * 180.02562 * 7 6 4 9 9 C 1.46506 * 119.99938 * 89.99527 * 8 7 6 10 10 C 1.34777 * 120.00021 * 270.00364 * 8 7 6 11 11 O 1.21519 * 119.99896 * 6.74718 * 10 8 7 12 12 C 1.48073 * 119.99957 * 186.74904 * 10 8 7 13 13 C 1.39867 * 120.93137 * 21.78956 * 12 10 8 14 14 C 1.38080 * 119.01580 * 179.97438 * 13 12 10 15 15 N 1.31851 * 120.94373 * 0.02562 * 14 13 12 16 16 C 1.31754 * 122.07047 * 359.97438 * 15 14 13 17 17 C 1.38366 * 120.87008 * 359.73487 * 16 15 14 18 18 Cl 1.73602 * 120.51735 * 180.26661 * 17 16 15 19 19 N 1.46504 * 109.47389 * 299.99578 * 4 2 1 20 20 C 1.36930 * 119.99573 * 85.00218 * 19 4 2 21 21 H 1.08000 * 120.00356 * 359.97438 * 20 19 4 22 22 C 1.38814 * 119.99809 * 179.73020 * 20 19 4 23 23 N 1.31612 * 120.00051 * 0.26897 * 22 20 19 24 24 Si 1.86807 * 119.99884 * 180.27610 * 22 20 19 25 25 H 1.48496 * 109.47171 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46933 * 119.99836 * 24 22 20 27 27 H 1.48500 * 109.46596 * 239.99666 * 24 22 20 28 28 H 1.09002 * 109.46620 * 300.00322 * 1 2 3 29 29 H 1.09000 * 109.46681 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47196 * 239.99222 * 2 1 3 32 32 H 1.09006 * 109.47058 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46621 * 299.99509 * 3 2 1 34 34 H 1.08996 * 109.47300 * 59.99897 * 3 2 1 35 35 H 1.08999 * 109.47103 * 305.00235 * 6 4 2 36 36 H 1.09003 * 109.46895 * 65.00255 * 6 4 2 37 37 H 1.08999 * 109.47257 * 300.00201 * 7 6 4 38 38 H 1.08999 * 109.47346 * 59.99747 * 7 6 4 39 39 H 1.09000 * 109.46621 * 83.76003 * 9 8 7 40 40 H 1.09004 * 109.46750 * 203.75577 * 9 8 7 41 41 H 1.08992 * 109.47438 * 323.76026 * 9 8 7 42 42 H 1.08000 * 120.49015 * 359.95203 * 13 12 10 43 43 H 1.08001 * 119.53169 * 180.02562 * 14 13 12 44 44 H 1.08005 * 119.56566 * 179.97438 * 16 15 14 45 45 H 0.97001 * 120.00103 * 265.00648 * 19 4 2 46 46 H 0.97001 * 120.00021 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2494 6 6 3.5700 -0.7218 1.2490 7 6 4.0799 -1.5492 2.4307 8 7 5.5450 -1.5492 2.4308 9 6 6.2775 -0.5099 3.1585 10 6 6.2188 -2.5054 1.7613 11 8 5.6176 -3.2935 1.0584 12 6 7.6919 -2.5955 1.8824 13 6 8.3583 -2.0410 2.9799 14 6 9.7330 -2.1485 3.0530 15 7 10.4163 -2.7623 2.1071 16 6 9.8297 -3.2988 1.0564 17 6 8.4555 -3.2430 0.9049 18 17 7.6915 -3.9590 -0.4798 19 7 1.5517 -0.0306 2.4455 20 6 0.3102 -0.3209 2.9448 21 1 -0.3092 -1.0588 2.4566 22 6 -0.1502 0.3294 4.0815 23 7 0.6044 1.2289 4.6761 24 14 -1.8408 -0.0723 4.7671 25 1 -2.4844 -1.1095 3.9214 26 1 -1.7038 -0.5802 6.1558 27 1 -2.6783 1.1540 4.7689 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 3.9330 -1.1564 0.3176 36 1 3.9337 0.3018 1.3384 37 1 3.7169 -1.1146 3.3620 38 1 3.7162 -2.5728 2.3414 39 1 6.3622 -0.7923 4.2078 40 1 7.2738 -0.4000 2.7301 41 1 5.7414 0.4358 3.0789 42 1 7.8059 -1.5359 3.7585 43 1 10.2560 -1.7237 3.8970 44 1 10.4290 -3.7919 0.3053 45 1 2.1078 0.6325 2.8837 46 1 0.2828 1.6831 5.4706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276138153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:52 Heat of formation + Delta-G solvation = 6.989968 kcal Electronic energy + Delta-G solvation = -27591.158651 eV Core-core repulsion = 23735.261138 eV Total energy + Delta-G solvation = -3855.897513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94482 -40.32242 -38.95646 -37.68142 -36.82194 -34.75928 -34.23314 -32.59746 -32.15309 -31.15377 -28.33216 -27.86467 -27.27495 -25.53304 -24.77414 -24.45587 -22.79250 -20.99534 -20.21193 -19.16482 -18.74621 -18.06663 -17.54925 -16.99323 -16.74251 -16.36951 -16.24792 -15.95843 -15.44335 -15.33503 -15.18777 -14.98444 -14.72975 -14.52252 -14.16904 -13.93963 -13.89256 -13.49474 -13.04004 -12.98083 -12.92644 -12.82430 -12.73113 -12.56427 -12.38437 -12.24158 -12.12531 -12.02367 -11.81796 -11.70997 -11.37241 -11.21933 -11.16612 -10.91862 -10.81216 -10.45866 -10.04703 -9.70304 -8.85477 -7.84510 -5.07564 -0.53922 -0.17812 0.97052 1.47943 1.51181 1.57796 1.67667 1.83962 2.58778 2.62028 3.18407 3.36953 3.49026 3.54929 3.69220 3.92379 3.97986 4.04379 4.17398 4.20401 4.27675 4.40239 4.44686 4.50196 4.53950 4.61974 4.66476 4.73086 4.76777 4.87078 4.89960 4.96205 5.03716 5.10416 5.18580 5.28482 5.35359 5.38600 5.43662 5.49325 5.60923 5.65713 5.81732 6.26878 6.38373 6.68173 6.97150 7.46526 8.20369 8.47296 9.38783 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002817 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.192122 B = 9936.098010 C =10792.694052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C -0.128 4.128 4 C 0.182 3.818 5 H 0.033 0.967 6 C -0.117 4.117 7 C 0.133 3.867 8 N -0.600 5.600 9 C 0.051 3.949 10 C 0.543 3.457 11 O -0.547 6.547 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.104 3.896 15 N -0.469 5.469 16 C 0.109 3.891 17 C -0.062 4.062 18 Cl -0.040 7.040 19 N -0.718 5.718 20 C -0.208 4.208 21 H 0.069 0.931 22 C -0.070 4.070 23 N -0.964 5.964 24 Si 0.950 3.050 25 H -0.273 1.273 26 H -0.298 1.298 27 H -0.300 1.300 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.192 0.808 43 H 0.208 0.792 44 H 0.188 0.812 45 H 0.376 0.624 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.930 -4.275 -5.331 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.185 4.185 4 C 0.073 3.927 5 H 0.051 0.949 6 C -0.157 4.157 7 C 0.010 3.990 8 N -0.332 5.332 9 C -0.090 4.090 10 C 0.330 3.670 11 O -0.425 6.425 12 C -0.107 4.107 13 C -0.157 4.157 14 C -0.052 4.052 15 N -0.178 5.178 16 C -0.048 4.048 17 C -0.092 4.092 18 Cl -0.011 7.011 19 N -0.359 5.359 20 C -0.340 4.340 21 H 0.087 0.913 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.782 3.218 25 H -0.198 1.198 26 H -0.226 1.226 27 H -0.228 1.228 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.208 0.792 43 H 0.225 0.775 44 H 0.205 0.795 45 H 0.208 0.792 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.248 -4.903 -5.727 22.546 hybrid contribution -2.260 0.073 0.401 2.296 sum 18.989 -4.830 -5.325 20.304 Atomic orbital electron populations 1.21773 0.96097 1.00416 1.01173 1.21630 0.95859 0.97117 0.98275 1.21637 1.00254 0.95963 1.00680 1.20323 0.91544 0.94109 0.86763 0.94934 1.21971 0.95444 1.00216 0.98020 1.21321 0.77546 1.00453 0.99660 1.47857 1.07031 1.27796 1.50484 1.22759 0.98184 0.90843 0.97197 1.18487 0.87008 0.81450 0.80021 1.90829 1.69939 1.42827 1.38882 1.20317 0.93441 1.00248 0.96721 1.23528 0.96824 0.97615 0.97694 1.23570 0.90887 0.93496 0.97264 1.67783 1.40664 1.07769 1.01624 1.23109 0.88965 0.96282 0.96438 1.22432 0.94906 0.99967 0.91871 1.98424 1.81766 1.81253 1.39607 1.42450 1.16867 1.47310 1.29231 1.19448 0.93447 1.15895 1.05251 0.91323 1.25210 1.00929 1.00483 0.99619 1.69758 1.38060 1.31064 1.22714 0.85398 0.81634 0.76887 0.77894 1.19792 1.22605 1.22773 0.92755 0.93227 0.94363 0.91754 0.92550 0.93038 0.94245 0.92029 0.91173 0.89921 0.92223 0.89328 0.87950 0.90355 0.79169 0.77544 0.79473 0.79165 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.26 71.98 0.59 -4.45 16 2 C -0.11 -3.71 2.80 -10.79 -0.03 -3.74 16 3 C -0.13 -4.17 8.68 71.98 0.63 -3.55 16 4 C 0.18 6.82 2.19 44.99 0.10 6.92 16 5 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 6 C -0.12 -3.74 4.57 30.59 0.14 -3.60 16 7 C 0.13 4.15 5.27 86.38 0.46 4.61 16 8 N -0.60 -15.05 2.87 -849.94 -2.44 -17.49 16 9 C 0.05 0.82 8.69 127.77 1.11 1.93 16 10 C 0.54 15.05 7.44 86.85 0.65 15.70 16 11 O -0.55 -19.21 14.24 -3.78 -0.05 -19.26 16 12 C -0.10 -2.05 5.56 -19.86 -0.11 -2.16 16 13 C -0.14 -1.84 7.67 22.63 0.17 -1.67 16 14 C 0.10 1.18 11.17 84.65 0.95 2.13 16 15 N -0.47 -7.47 10.33 -195.90 -2.02 -9.50 16 16 C 0.11 1.84 10.99 84.73 0.93 2.77 16 17 C -0.06 -1.32 6.37 22.71 0.14 -1.17 16 18 Cl -0.04 -0.98 26.49 -2.72 -0.07 -1.05 16 19 N -0.72 -32.39 3.69 -322.93 -1.19 -33.58 16 20 C -0.21 -10.68 7.57 84.04 0.64 -10.04 16 21 H 0.07 3.53 7.39 -2.91 -0.02 3.50 16 22 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.96 -55.33 13.06 21.65 0.28 -55.05 16 24 Si 0.95 45.10 29.55 68.60 2.03 47.13 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 28 H 0.05 2.36 6.01 -2.39 -0.01 2.34 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.65 6.55 -2.38 -0.02 1.63 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.14 6.71 -2.39 -0.02 2.12 16 37 H 0.08 2.82 7.68 -2.39 -0.02 2.80 16 38 H 0.06 2.12 7.53 -2.39 -0.02 2.10 16 39 H 0.09 1.05 7.18 -2.39 -0.02 1.03 16 40 H 0.10 1.20 5.08 -2.38 -0.01 1.18 16 41 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 42 H 0.19 1.62 4.38 -2.91 -0.01 1.60 16 43 H 0.21 0.70 8.06 -2.91 -0.02 0.67 16 44 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.38 18.04 7.80 -92.71 -0.72 17.31 16 46 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -66.93 379.54 3.63 -63.29 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.28 Total: 25.16 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.83 Total: 0.34 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -5.37 Total: -115.62 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -66.93 3.63 -63.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276138153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.281 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds