Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30833 * 125.96021 * 2 1 4 4 C 1.33236 * 109.83040 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.52490 * 179.73674 * 4 3 2 6 6 H 1.09001 * 109.47460 * 15.00425 * 5 4 3 7 7 C 1.53002 * 109.47143 * 254.99661 * 5 4 3 8 8 N 1.46905 * 109.47142 * 134.99736 * 5 4 3 9 9 C 1.47480 * 110.99949 * 85.94929 * 8 5 4 10 10 C 1.53506 * 87.93507 * 138.70646 * 9 8 5 11 11 C 1.47475 * 111.00369 * 181.91825 * 8 5 4 12 12 H 1.09006 * 113.47322 * 336.06467 * 11 8 5 13 13 C 1.53000 * 113.47691 * 106.52902 * 11 8 5 14 14 N 1.46506 * 109.47143 * 305.00188 * 13 11 8 15 15 C 1.34770 * 119.99953 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00036 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00225 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47491 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00343 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99512 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99777 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46986 * 90.00028 * 23 21 19 25 25 H 1.48495 * 109.47062 * 209.99791 * 23 21 19 26 26 H 1.48496 * 109.47151 * 330.00143 * 23 21 19 27 27 N 1.30709 * 108.94674 * 359.97438 * 4 3 2 28 28 N 1.34424 * 125.96595 * 179.97438 * 2 1 3 29 29 H 0.97000 * 126.82223 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47382 * 90.00034 * 1 2 3 31 31 H 1.09003 * 109.47132 * 210.00114 * 1 2 3 32 32 H 1.09006 * 109.47499 * 329.99615 * 1 2 3 33 33 H 1.08999 * 109.46995 * 69.91615 * 7 5 4 34 34 H 1.08995 * 109.46847 * 189.91143 * 7 5 4 35 35 H 1.08997 * 109.46842 * 309.91500 * 7 5 4 36 36 H 1.09007 * 113.47591 * 253.47528 * 9 8 5 37 37 H 1.09000 * 113.47432 * 23.93378 * 9 8 5 38 38 H 1.09009 * 114.17028 * 220.33559 * 10 9 8 39 39 H 1.08991 * 114.34930 * 87.63364 * 10 9 8 40 40 H 1.08997 * 109.47049 * 65.00294 * 13 11 8 41 41 H 1.09001 * 109.47391 * 185.00460 * 13 11 8 42 42 H 0.96996 * 120.00031 * 0.02562 * 14 13 11 43 43 H 1.09001 * 109.47500 * 300.00677 * 17 15 14 44 44 H 1.09008 * 109.47160 * 60.00716 * 17 15 14 45 45 H 0.96996 * 119.99890 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7371 1.6238 -0.0049 6 1 4.4065 2.6290 0.2568 7 6 5.3675 1.6408 -1.3989 8 7 5.7296 1.1641 0.9758 9 6 6.6307 0.1577 0.3838 10 6 7.7908 0.8474 1.1151 11 6 6.8825 2.0821 1.0311 12 1 7.0205 2.6613 0.1180 13 6 6.9124 2.9478 2.2923 14 7 5.6466 3.6751 2.4154 15 6 5.4449 4.5049 3.4581 16 8 6.3115 4.6498 4.2942 17 6 4.1428 5.2526 3.5852 18 16 4.1781 6.2769 5.0771 19 6 2.5814 7.0155 4.9792 20 1 1.9242 6.7738 4.1569 21 6 2.1687 7.9086 5.9582 22 7 2.9699 8.2035 6.9600 23 14 0.4762 8.6922 5.8539 24 1 -0.5087 7.8398 6.5673 25 1 0.5138 10.0370 6.4824 26 1 0.0779 8.8225 4.4293 27 7 3.6194 -0.6167 0.0015 28 7 2.2964 -1.0880 0.0005 29 1 2.0094 -2.0145 0.0006 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 4.6964 2.1440 -2.0950 34 1 6.3178 2.1732 -1.3614 35 1 5.5372 0.6174 -1.7334 36 1 6.4384 -0.8566 0.7338 37 1 6.7014 0.2234 -0.7019 38 1 8.7055 0.9254 0.5273 39 1 7.9606 0.4865 2.1295 40 1 7.0525 2.3118 3.1663 41 1 7.7353 3.6595 2.2251 42 1 4.9535 3.5589 1.7469 43 1 4.0023 5.8888 2.7113 44 1 3.3200 4.5407 3.6523 45 1 2.6813 8.8274 7.6443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276793958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = 64.756936 kcal Electronic energy + Delta-G solvation = -26893.563853 eV Core-core repulsion = 23074.507761 eV Total energy + Delta-G solvation = -3819.056092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.22736 -41.80054 -40.32499 -35.82280 -35.06712 -34.57968 -33.34671 -32.61908 -31.43605 -28.89382 -28.72872 -28.47607 -27.61565 -25.20759 -24.12212 -22.19004 -21.82064 -21.21073 -20.16513 -19.69578 -18.89548 -17.95590 -17.64363 -17.30540 -16.87409 -16.72050 -16.54758 -16.06741 -15.80088 -15.45496 -15.16574 -15.15826 -14.63728 -14.46684 -14.30046 -14.04276 -13.71322 -13.70117 -13.31165 -13.16212 -13.15133 -12.88064 -12.77930 -12.68422 -12.60681 -12.33438 -12.03590 -11.99642 -11.74857 -11.54820 -11.13724 -11.12171 -11.07597 -10.91225 -10.48091 -10.28621 -10.08044 -9.78869 -8.66434 -8.33907 -6.12265 0.58871 1.26980 1.43154 1.46813 1.58231 1.62066 1.72277 1.78880 2.24897 2.29128 2.74281 2.99931 3.12696 3.32818 3.51762 3.55275 3.75855 3.79698 3.93024 4.02368 4.09099 4.16852 4.22507 4.27169 4.36051 4.48734 4.49930 4.60480 4.67410 4.70839 4.80333 4.89488 4.95333 5.03272 5.03838 5.05706 5.20144 5.27372 5.31436 5.39589 5.42304 5.50151 6.01043 6.20119 6.20628 6.46612 7.07002 7.09579 7.23061 8.75516 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.002929 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.139255 B = 9556.269009 C =11830.239373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.284 3.716 3 N -0.576 5.576 4 C 0.233 3.767 5 C 0.135 3.865 6 H 0.096 0.904 7 C -0.174 4.174 8 N -0.478 5.478 9 C -0.002 4.002 10 C -0.123 4.123 11 C 0.019 3.981 12 H 0.116 0.884 13 C 0.137 3.863 14 N -0.708 5.708 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.258 1.258 27 N -0.321 5.321 28 N -0.478 5.478 29 H 0.454 0.546 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.406 0.594 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -22.144 -23.567 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 N -0.306 5.306 4 C -0.050 4.050 5 C 0.023 3.977 6 H 0.114 0.886 7 C -0.233 4.233 8 N -0.201 5.201 9 C -0.130 4.130 10 C -0.161 4.161 11 C -0.090 4.090 12 H 0.133 0.867 13 C 0.013 3.987 14 N -0.362 5.362 15 C 0.318 3.682 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.082 5.918 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.182 1.182 27 N -0.151 5.151 28 N -0.198 5.198 29 H 0.302 0.698 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.243 0.757 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.889 -22.014 -21.452 30.795 hybrid contribution -2.273 -0.081 -1.400 2.671 sum -0.384 -22.095 -22.852 31.789 Atomic orbital electron populations 1.20619 0.80638 1.06229 1.06032 1.25121 0.98112 0.82224 0.93940 1.70342 1.01874 1.31383 1.27024 1.24055 0.93104 0.90338 0.97525 1.20421 0.88224 0.95087 0.93953 0.88563 1.22445 1.02457 1.03504 0.94866 1.69156 1.06573 1.07636 1.36782 1.23984 0.91333 0.97409 1.00311 1.23147 0.97421 0.93168 1.02383 1.23884 0.92146 0.95080 0.97940 0.86694 1.21448 0.85433 0.93984 0.97824 1.45747 1.19621 1.44635 1.26154 1.20024 0.87812 0.79149 0.81190 1.90676 1.46084 1.65330 1.42209 1.23358 0.98432 1.02164 1.04104 1.85498 1.23683 1.53680 1.28966 1.23208 1.01562 1.31061 1.13781 0.90120 1.26135 1.02984 0.96158 0.93791 1.70181 1.38302 1.34016 1.12249 0.84945 0.76440 0.77373 0.79168 1.19282 1.20078 1.18174 1.77862 0.97883 1.12190 1.27137 1.47977 1.03651 1.10831 1.57363 0.69794 0.87033 0.87164 0.88826 0.91103 0.88727 0.90956 0.90664 0.88036 0.87337 0.89421 0.92703 0.90749 0.75733 0.87352 0.88219 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.51 71.23 0.75 0.16 16 2 C 0.28 4.93 8.24 138.23 1.14 6.07 16 3 N -0.58 -14.11 11.19 -179.74 -2.01 -16.12 16 4 C 0.23 5.50 6.94 138.63 0.96 6.46 16 5 C 0.13 2.60 2.78 44.17 0.12 2.72 16 6 H 0.10 1.99 6.22 -2.39 -0.01 1.97 16 7 C -0.17 -2.27 7.72 71.98 0.56 -1.72 16 8 N -0.48 -9.31 5.89 -881.35 -5.19 -14.50 16 9 C 0.00 -0.03 6.94 83.56 0.58 0.55 16 10 C -0.12 -1.56 8.00 30.94 0.25 -1.32 16 11 C 0.02 0.30 3.08 42.18 0.13 0.43 16 12 H 0.12 1.34 5.92 -2.38 -0.01 1.32 16 13 C 0.14 3.34 5.81 86.38 0.50 3.84 16 14 N -0.71 -20.86 5.46 -463.06 -2.53 -23.39 16 15 C 0.53 21.61 7.85 87.66 0.69 22.29 16 16 O -0.56 -27.73 15.86 -3.04 -0.05 -27.77 16 17 C -0.13 -5.62 6.16 71.23 0.44 -5.18 16 18 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 19 C -0.55 -32.46 9.50 67.95 0.65 -31.81 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 23 Si 1.00 44.58 29.55 68.60 2.03 46.61 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 N -0.32 -7.13 12.34 -51.34 -0.63 -7.76 16 28 N -0.48 -7.63 7.45 -50.71 -0.38 -8.01 16 29 H 0.45 3.67 8.96 -213.10 -1.91 1.76 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.84 5.82 -2.39 -0.01 0.83 16 35 H 0.07 0.94 6.48 -2.39 -0.02 0.93 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.10 1.14 4.85 -2.39 -0.01 1.13 16 38 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.09 1.32 7.93 -2.39 -0.02 1.30 16 40 H 0.05 1.55 7.87 -2.39 -0.02 1.53 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.41 10.33 6.17 -92.71 -0.57 9.75 16 43 H 0.11 4.25 8.14 -2.40 -0.02 4.23 16 44 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 45 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -87.17 381.51 -3.86 -91.02 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -1.44 Total: 22.57 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 7.23 Total: 3.79 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -10.46 Total: -126.61 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -87.17 -3.86 -91.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276793958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.780 kcal (2) G-P(sol) polarization free energy of solvation -87.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds