Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30833 * 125.96216 * 2 1 4 4 C 1.33247 * 109.83008 * 180.20148 * 3 2 1 5 5 C 1.50694 * 125.52442 * 179.86078 * 4 3 2 6 6 H 1.09005 * 109.47310 * 344.70513 * 5 4 3 7 7 C 1.52998 * 109.47646 * 104.71187 * 5 4 3 8 8 N 1.46911 * 109.46696 * 224.71304 * 5 4 3 9 9 C 1.47958 * 111.00043 * 66.47908 * 8 5 4 10 10 C 1.53928 * 86.17948 * 137.58309 * 9 8 5 11 11 C 1.47956 * 110.99877 * 165.83861 * 8 5 4 12 12 H 1.09005 * 113.85994 * 336.74443 * 11 8 5 13 13 C 1.53002 * 113.76027 * 108.09874 * 11 8 5 14 14 N 1.46497 * 109.47075 * 160.73457 * 13 11 8 15 15 C 1.34777 * 119.99839 * 185.04937 * 14 13 11 16 16 O 1.21279 * 120.00485 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99931 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47102 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99832 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00093 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99648 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99701 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47011 * 89.99925 * 23 21 19 25 25 H 1.48494 * 109.47044 * 209.99571 * 23 21 19 26 26 H 1.48500 * 109.47224 * 330.00057 * 23 21 19 27 27 N 1.30709 * 108.94448 * 359.58564 * 4 3 2 28 28 N 1.34427 * 125.96171 * 179.76105 * 2 1 3 29 29 H 0.97003 * 126.82550 * 359.91901 * 28 2 1 30 30 H 1.09002 * 109.46542 * 270.26694 * 1 2 3 31 31 H 1.08994 * 109.47036 * 30.26483 * 1 2 3 32 32 H 1.09001 * 109.47174 * 150.27188 * 1 2 3 33 33 H 1.09002 * 109.46994 * 58.14048 * 7 5 4 34 34 H 1.09000 * 109.47116 * 178.14049 * 7 5 4 35 35 H 1.08997 * 109.47005 * 298.14737 * 7 5 4 36 36 H 1.08996 * 113.76075 * 23.25994 * 9 8 5 37 37 H 1.09008 * 113.75301 * 251.90171 * 9 8 5 38 38 H 1.09004 * 113.73604 * 90.63589 * 10 9 8 39 39 H 1.08999 * 113.73466 * 221.80982 * 10 9 8 40 40 H 1.08998 * 109.46948 * 280.73283 * 13 11 8 41 41 H 1.08999 * 109.47069 * 40.73483 * 13 11 8 42 42 H 0.97004 * 120.00301 * 5.05143 * 14 13 11 43 43 H 1.08996 * 109.47235 * 300.00163 * 17 15 14 44 44 H 1.08998 * 109.47171 * 60.00232 * 17 15 14 45 45 H 0.97005 * 119.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0044 5 6 4.7372 1.6236 -0.0088 6 1 4.4062 2.6265 -0.2790 7 6 5.3694 1.6532 1.3841 8 7 5.7284 1.1551 -0.9867 9 6 5.2031 1.2597 -2.3659 10 6 6.5956 1.7945 -2.7457 11 6 6.7325 2.2046 -1.2683 12 1 6.3837 3.2160 -1.0592 13 6 8.1117 1.9140 -0.6731 14 7 9.1206 2.7239 -1.3602 15 6 10.4270 2.5596 -1.0723 16 8 10.7673 1.7410 -0.2447 17 6 11.4650 3.3924 -1.7795 18 16 13.1120 2.9407 -1.1798 19 6 14.0997 4.0351 -2.1449 20 1 13.6308 4.7096 -2.8459 21 6 15.4807 4.0294 -2.0049 22 7 16.0522 3.2070 -1.1509 23 14 16.5279 5.1891 -3.0285 24 1 16.7077 6.4692 -2.2976 25 1 17.8547 4.5699 -3.2760 26 1 15.8538 5.4503 -4.3256 27 7 3.6195 -0.6168 0.0017 28 7 2.2964 -1.0881 0.0045 29 1 2.0093 -2.0146 0.0095 30 1 -0.3632 0.0048 1.0277 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 5.6705 0.6447 1.6679 34 1 6.2439 2.3037 1.3724 35 1 4.6442 2.0319 2.1043 36 1 4.4052 1.9939 -2.4774 37 1 4.9636 0.2975 -2.8188 38 1 7.2957 1.0171 -3.0518 39 1 6.5685 2.6375 -3.4361 40 1 8.1086 2.1612 0.3885 41 1 8.3465 0.8571 -0.7994 42 1 8.8485 3.3785 -2.0224 43 1 11.4070 3.2108 -2.8527 44 1 11.2820 4.4481 -1.5793 45 1 17.0173 3.2033 -1.0528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276793960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = 81.196537 kcal Electronic energy + Delta-G solvation = -26007.773468 eV Core-core repulsion = 22189.430251 eV Total energy + Delta-G solvation = -3818.343217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58553 -40.55122 -38.84926 -34.98042 -34.03576 -32.78206 -32.39858 -32.00264 -30.14415 -28.43400 -27.78770 -27.20270 -25.45099 -24.25652 -23.30443 -21.59175 -20.48770 -20.24237 -19.82091 -18.30590 -17.81212 -16.73250 -16.36770 -16.11401 -16.05893 -15.19271 -15.10894 -14.78594 -14.74433 -14.50781 -14.17319 -13.83634 -13.66853 -13.51533 -13.35327 -13.05863 -12.75025 -12.57580 -12.41982 -12.25468 -12.17566 -11.94798 -11.65350 -11.41645 -11.15280 -11.04021 -10.99273 -10.86855 -10.73108 -10.44581 -10.41832 -9.83189 -9.78319 -9.35073 -9.16035 -9.03977 -8.79322 -8.19248 -6.46123 -6.18556 -3.88750 1.19984 2.22534 2.41585 2.94338 3.17445 3.24071 3.24766 3.31569 3.40854 3.59471 3.93695 4.11751 4.22734 4.23525 4.33605 4.40473 4.71122 4.75539 4.80770 4.85880 4.93718 5.03920 5.07337 5.16543 5.18540 5.23494 5.33795 5.45673 5.50845 5.56753 5.65943 5.71627 5.75869 5.81960 5.93828 5.94499 5.96347 6.08052 6.15141 6.18492 6.57850 6.66293 6.75081 7.62534 7.72071 7.77439 8.38239 8.68753 9.26698 10.88851 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.041261 B = 0.001678 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.447410 B =16687.381764 C =16956.961115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.278 3.722 3 N -0.540 5.540 4 C 0.235 3.765 5 C 0.143 3.857 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.455 5.455 9 C 0.005 3.995 10 C -0.139 4.139 11 C 0.023 3.977 12 H 0.088 0.912 13 C 0.141 3.859 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.280 5.280 28 N -0.486 5.486 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.575 -4.313 -0.781 34.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 N -0.270 5.270 4 C -0.048 4.048 5 C 0.032 3.968 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.180 5.180 9 C -0.123 4.123 10 C -0.177 4.177 11 C -0.087 4.087 12 H 0.105 0.895 13 C 0.016 3.984 14 N -0.391 5.391 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.109 5.109 28 N -0.205 5.205 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -33.069 -6.422 0.986 33.702 hybrid contribution -0.731 2.083 -2.077 3.031 sum -33.800 -4.339 -1.091 34.095 Atomic orbital electron populations 1.20391 0.83654 1.05000 1.04606 1.24377 0.96597 0.82943 0.96092 1.70336 1.01321 1.29678 1.25653 1.23886 0.92466 0.90198 0.98296 1.20455 0.86797 0.93452 0.96115 0.90662 1.21814 1.00865 1.03831 0.93456 1.68584 1.08343 1.37982 1.03042 1.23807 0.96759 1.01688 0.90094 1.23387 0.97062 1.01790 0.95430 1.23695 0.93960 0.95132 0.95872 0.89460 1.20995 0.84579 0.96773 0.96060 1.45850 1.05993 1.42465 1.44812 1.20268 0.82233 0.83261 0.82409 1.90712 1.80432 1.34954 1.32913 1.23525 1.01406 1.02100 1.03296 1.85417 0.90628 1.52567 1.54755 1.22877 0.93788 1.24737 1.26995 0.90936 1.24986 0.96951 0.96015 0.95616 1.70020 1.10956 1.35511 1.33788 0.86173 0.79173 0.80191 0.79987 1.20293 1.20774 1.19717 1.78200 0.95487 1.12259 1.24912 1.48156 1.04671 1.10068 1.57606 0.71482 0.88974 0.88369 0.89848 0.91022 0.90964 0.91853 0.91194 0.89469 0.88435 0.90475 0.91720 0.90225 0.76987 0.89238 0.89258 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.28 2.01 8.24 -155.70 -1.28 0.73 16 3 N -0.54 -5.58 11.19 -8.16 -0.09 -5.67 16 4 C 0.23 2.58 6.29 -156.86 -0.99 1.60 16 5 C 0.14 1.42 2.21 -68.86 -0.15 1.26 16 6 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 7 C -0.14 -1.36 9.30 37.16 0.35 -1.01 16 8 N -0.46 -4.61 5.76 -224.16 -1.29 -5.90 16 9 C 0.01 0.05 7.34 -2.77 -0.02 0.03 16 10 C -0.14 -1.15 7.64 -25.80 -0.20 -1.34 16 11 C 0.02 0.21 2.72 -66.66 -0.18 0.03 16 12 H 0.09 0.68 7.73 -51.93 -0.40 0.27 16 13 C 0.14 1.73 5.67 -4.04 -0.02 1.70 16 14 N -0.74 -9.79 5.41 -60.29 -0.33 -10.12 16 15 C 0.53 10.03 7.85 -10.98 -0.09 9.95 16 16 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 N -0.28 -3.16 12.78 32.42 0.41 -2.75 16 28 N -0.49 -3.61 7.45 32.62 0.24 -3.36 16 29 H 0.44 1.67 8.96 -182.33 -1.63 0.03 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.57 7.85 -51.93 -0.41 0.17 16 37 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.10 0.93 8.10 -51.93 -0.42 0.50 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.84 7.13 -51.93 -0.37 0.47 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.40 4.02 8.41 -40.82 -0.34 3.68 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -38.19 391.93 -11.43 -49.62 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.09 Total: -0.05 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.78 Total: -2.79 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.32 Total: -53.41 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.19 -11.43 -49.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276793960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.820 kcal (2) G-P(sol) polarization free energy of solvation -38.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds